Dbfetch
ID JN634760; SV 1; linear; genomic RNA; STD; VRL; 7552 BP. XX AC JN634760; XX DT 30-JAN-2012 (Rel. 111, Created) DT 05-APR-2012 (Rel. 112, Last updated, Version 3) XX DE Apple chlorotic leaf spot virus isolate Z1, complete genome. XX KW . XX OS Apple chlorotic leaf spot virus OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Trivirinae; Trichovirus. XX RN [1] RP 1-7552 RX DOI; 10.1007/s00705-011-1195-5. RX PUBMED; 22278708. RA Niu F., Pan S., Wu Z., Jiang D., Li S.; RT "Complete nucleotide sequences of the genomes of two isolates of apple RT chlorotic leaf spot virus from peach (Prunus persica) in China"; RL Arch. Virol. 157(4):783-786(2012). XX RN [2] RP 1-7552 RA Niu F.Q., Pan S., Li S.F.; RT ; RL Submitted (30-AUG-2011) to the INSDC. RL State Key Laboratory of Biology of Plant Diseases and Insect Pests, RL Institute of Plant Protection, Chinese Academy of Agricultural Sciences, RL Yuanmingyuan Road West 2, Haidian, Beijing 100193, China XX DR MD5; d5777ee68781cf2b1704895c317850b7. DR EuropePMC; PMC4982687; 27519059. DR EuropePMC; PMC5595849; 28900201. XX FH Key Location/Qualifiers FH FT source 1..7552 FT /organism="Apple chlorotic leaf spot virus" FT /host="Prunus persica" FT /isolate="Z1" FT /mol_type="genomic RNA" FT /country="China" FT /collected_by="Shifang Li" FT /collection_date="10-Jun-2011" FT /db_xref="taxon:12175" FT 5'UTR 1..151 FT CDS 152..5803 FT /codon_start=1 FT /product="polymerase" FT /note="ORF1" FT /db_xref="GOA:H2DQ59" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR005123" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008744" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR037151" FT /db_xref="UniProtKB/TrEMBL:H2DQ59" FT /protein_id="AEY80037.1" FT /translation="MAFSYRTPQEELLSRLPQSQQEVISGFQYERIQKEEEKKVENFSF FT YLPEKTREWFTKSGVYLSPFAYVNHSHPGCKTLENHLLFNVVASYISKYPYVACLSIKS FT NKMSKMERLGSNSVKTYDILNRLVTAKDKARYGPLAKPERSPCPKKTNVFIHDEIHYWS FT RDQLETFLQIYKPKNLWATLVSPPEILAGYKSSVLPFLYQFEIHGKDLVYMPDGVRSES FT YTQPLENGYLLSSSSILVKDRTTGVEVRYQVSLTYSLGSHHLFHIYPTENLMKEEVRRF FT GPYDLFDVGSLFVKPVRVPIQDFPLSVFKKIFIYMSSLKKPDVQSAVAKLRQLSDADIS FT IESIFMVQEFASRIEKDGIEGWSCSFRGCMKDWFFDKLPYREVLEKIGLADDFTRRLMK FT IKPLAFDIHTTDRPLTVRMVIDQIWGERQSSNDDIPNIVFYGRREWIEHGVVPKVKKGL FT AKLIPGREFGANNYPREIYSDLLSSTSIWRSYDDNLRHRNASPLIVLKSSKAYSEAAEF FT NSHCLSLCATSCEEKIAKTPFELEHEKRRKELSMKCLDFHMKKMKVKNLLELEEKLGEN FT NRKISRRSKKIREQRRSRMIPVHLLTPIDDVEAKELKAKEKERTEPHIDKGADETKRNA FT EPSDEEPKVKDVMPDAPCVSGLPVGLKLSNLVGKTQLCSAGLIKTVGNDYLALAEQVES FT MPLVQLKGKKAAYFCLDFPMVYFHDKVSYPTFEATGEIKQVMMRAKEKWGINFNSALVQ FT VYSDGCRLPLHSDNEECYDDDGILTINIKGDAKFHTTCHDEITDLKQGNEILMPAGYQK FT KNKHAVEVNSEGRTSVTLRVHKRDFSFESKLRFIKGKFDCLFVSIAEIIHKKPEEVMMF FT IPHIMDRCISNRGCSLDDAKAICEKYEIKIECEGDCGLVECGTSGLSIGRMLLRGNHFS FT VASVRRSSMDSLANSSKEIKSNGVLDHVTFNFHKRLKLVEPDLTIVDVKVDSSRAGKLL FT KSLMDGMTGIVSHNSTHEGWRMIKGINSTSEMRSFMSMVRGQSEEIKGDLFDKVQELNF FT MKVRIYGIFGFAGSGKSHAIQNLIQSEFKGSQGVMVICPRRFLAKDWNEKGVDEKDIKT FT FESALKSDVKGKRLFILDEVSLLPKGFTDLLMLKMHMEGILRKSTIVCIGDPLQAGYFC FT PKDDNYLSREGEIKRLFKEGVNYKWYSYRINKFVAKKLAIETMNDFIGIDEQSSIYKDM FT PSAHHFMEKKGNHIEVILVASMVEKELYSNYGNVMTFGESQGLTFNCGVIVLSEEAKLC FT SDAHIMVAVTRFRRGFCFALGSKGSKEDYMRSMKSGLLQRMCSGIGASKEFILGSSSVN FT LILSEKDITKGAGVDEMDREARLEGDVWLKSMIYLGKRYHIIEPLGQVIKLTDGAIKCH FT IPVCSSQTLGPELDRIQAREFREFKGKNGWSNQFREEAGPNWKFPYRVNQAMSYEAVYP FT RHKMDDDLTFLAAIKKRLRFDNAANNYAKFKAAESRGKYLAKVFLKHVPIKCGRDQRLL FT DQCRQEFEETKLSKSAATIGAHSQRSDSDWPLDKIFLFMKSQLCTKFEKRFTEAKAGQT FT LACFPHKILVEFSPWCRYTEKVLTANLPDNYYIHQRKNFCELEDFARRFSNGSTCVESD FT YTAFDVSQDHTILAFEVELLKHFGWDDKILQSYIKMKCTLGCRLGGFAIMRFTGEFSTF FT LFNTLANMVFTFCRYEVPDGTPICFAGDDMCALRNLREIDTHEFILNKLSLKAKVNRTK FT VPMFCGWRLCCDGLIKEPCLIYERLQVAIENGRLMDVIDSYFLEFSFAYKLGERLYSHL FT EIEQLNYHQVLTRFFIRNKHLLRGDSRHSISELEWLSDEDGDDGKGSQVEDRRRGYSNC FT WGEKLQNLF" FT CDS 5715..7097 FT /codon_start=1 FT /product="movement protein" FT /note="ORF2" FT /db_xref="GOA:H2DQ60" FT /db_xref="InterPro:IPR001815" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:H2DQ60" FT /protein_id="AEY80039.1" FT /translation="MAMMVRGHKLKIAEGDIPIAGVKSSRIYSDISPFKRASDLMIHWN FT EFVFKVMPEDIAGDGFRLASIPVIPSSEVQAVLRKRESTNYVHWGALSISIDALFRKNA FT GVSGWCYVYDNRWETFEQAMLQKFRFNLDSGSATLVTSPNFPVSLDDPGLSNSISVAVM FT FENLNFKLESYPISVRVGNMCRFFDSFLSSVKNKVDSNFLLESANADPLGAGAFGFEQD FT DQVSELFNYIQTVPTQAIRSREHEIPKGLFGMMGKKKVKSFEFASGLRDLGKRKPQRGR FT AIERSLSQRVVPGFRSQGEKSEYQGLSTDSDFENFITRSGKSKAGAKSITSEGSSTDNI FT SAREFQFARQNKKKEDGSSSESAAKGGRRFEGVLGRRRQTPSWKDRGNPGTDVGVHLRE FT HSNPGDVRADRVPGPDGGGEVNGGPEGDRVIQSEGDRQYDQGLQDYLFGSEHQQHDLPA FT SV" FT CDS 6781..7362 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3" FT /db_xref="GOA:H2DQ61" FT /db_xref="InterPro:IPR008879" FT /db_xref="UniProtKB/TrEMBL:H2DQ61" FT /protein_id="AEY80038.1" FT /translation="MAAVLNLQLKVDADLRAFLVAEGRPLHGKTGVILEQMLESIFANI FT AIQGTSEQTEFLDLMVEVKSMEDQKVIGSYNLKEIVNMIKAFRTTSSDPNISNMTFRQV FT CEAFAPEARNGLVKLKYKGVFTNLFTTMPEVGSKYPELMFDFNKGLNMFIMNKAQQKVI FT TNMNRRLLQTEFAKSENEAKLSSVSTDLCI" FT 3'UTR 7363..7552 XX SQ Sequence 7552 BP; 2338 A; 1339 C; 1862 G; 2013 T; 0 other; tgatactgat acagtgtaca ctcacgtcgt gagtaaacag attgacgtaa cgcctcaatc 60 gtggtcaagg accagcatta taatgctatc acattaaata caatcacatt gcatttcaga 120 actttccgtt taatcacgtg aaaggttaca gatggctttc tcctacagaa cgccacagga 180 agaactccta agtagactgc ctcagtctca gcaggaggtg ataagtgggt ttcaatatga 240 acgcattcaa aaggaggagg agaagaaggt ggaaaacttc tctttttacc taccagagaa 300 aaccagggag tggttcacta agtcgggtgt ttatttgtca cccttcgctt acgttaatca 360 ttctcatcct ggctgcaaaa ctctggagaa ccacctttta tttaatgttg tagctagtta 420 tattagtaag tacccttatg tagcatgcct cagtattaaa tccaataaga tgagcaaaat 480 ggagcgattg ggttccaatt ctgtcaagac ttatgatatc ttaaatagat tagtcacagc 540 taaagataag gctcgttatg ggcctttggc caaacctgag agatccccat gtccgaagaa 600 gactaatgtg ttcattcatg atgaaattca ttattggtca agggatcagc tagagacttt 660 tctccaaatc tacaaaccaa aaaatttatg ggcgacctta gtgtctcccc ccgaaatatt 720 agccggctac aagtcatccg tccttccatt cctttatcaa tttgaaattc atgggaagga 780 tctggtttat atgcctgatg gggtgaggtc tgaaagttac acccaacctc ttgaaaatgg 840 ctacctgctt agttcaagca gcatacttgt taaagacaga accactgggg ttgaggttag 900 gtatcaggtg agtctcacgt attcattggg ttcccatcat ttatttcaca tctatccaac 960 tgagaatttg atgaaagagg aagtgagaag atttgggccc tatgacctct tcgacgttgg 1020 ctctttattt gttaaacctg tgcgtgttcc gattcaagac ttccctctca gtgtgttcaa 1080 gaaaatcttc atctacatga gttcactgaa gaaacctgat gtgcagtcag cagtggccaa 1140 actgagacag ctgtctgatg ctgacatctc aattgaaagt atcttcatgg ttcaagagtt 1200 tgccagcagg atagagaaag atggcataga aggatggtct tgctcatttc ggggttgcat 1260 gaaggattgg ttcttcgata aattgccata tagggaggtt ctggagaaga ttggcctggc 1320 tgacgatttc acgagaaggt tgatgaaaat caaaccttta gccttcgaca tccataccac 1380 agacaggccg ttgaccgtca ggatggtaat agatcaaatc tggggggaga gacaaagttc 1440 caatgatgac atacccaaca tagtcttcta tggaaggaga gaatggattg aacatggggt 1500 ggttcccaag gtcaagaagg ggttggctaa attgattccg ggaagggagt ttggcgcaaa 1560 caattaccca agagagatct actctgactt gttgtcatca acatccattt ggagatcata 1620 tgatgataat ctgaggcaca gaaacgccag tcccctcatt gtgctcaaat ccagcaaagc 1680 ctactcagaa gcagcagaat tcaattcaca ctgtcttagt ctatgtgcaa catcttgtga 1740 agaaaaaatt gcaaagactc cttttgagct ggagcacgaa aagagaagaa aggaattgtc 1800 aatgaagtgt ttagatttcc acatgaagaa aatgaaagta aagaacttgc ttgagctgga 1860 ggaaaaactc ggcgagaaca acagaaaaat ttcaaggagg agcaaaaaga tcagggaaca 1920 gagaagatcg aggatgattc cggtgcatct gctcacacca attgatgatg tggaggctaa 1980 ggagctcaaa gcgaaggaaa aagagaggac agagcctcac attgacaagg gggctgatga 2040 aaccaaaagg aatgctgaac cctctgacga ggagcccaag gtgaaagatg tgatgccgga 2100 tgctccatgt gtttcaggac tccctgtggg tttaaaactg agtaatctag ttggcaagac 2160 acaactctgc tcagctggtt tgattaaaac ggttgggaat gattaccttg cgttggctga 2220 acaggtggag agcatgcctc ttgttcaact caaagggaag aaagcagcat atttttgcct 2280 cgactttcca atggtgtatt ttcatgacaa ggtttcctat ccaacatttg aggcgactgg 2340 agagattaag caagtaatga tgagggcaaa agaaaaatgg ggaattaact tcaacagtgc 2400 attggttcaa gtttacagtg atggatgccg attgcctttg catagtgaca atgaggaatg 2460 ttatgatgat gatggaatac ttacaatcaa catcaaggga gatgcaaagt ttcacacaac 2520 ctgtcatgat gagattacag atttgaagca agggaatgag atattaatgc cagcaggtta 2580 ccagaagaag aacaagcatg cagtggaagt caactcagaa ggaaggacaa gtgtcactct 2640 aagagtgcac aaaagagact tcagttttga gtctaagctc agattcatca aaggcaagtt 2700 cgactgcttg tttgttagca ttgctgaaat aatacacaag aaacctgagg aggttatgat 2760 gttcatccca catatcatgg acaggtgcat aagtaacagg ggctgttcac ttgatgacgc 2820 aaaagcaatc tgtgaaaagt atgagattaa aatagaatgt gaaggcgatt gtggactagt 2880 ggagtgtggc acatcggggc tttcaattgg gaggatgctt ctcaggggaa atcatttttc 2940 tgtggcctct gtcaggagat catcaatgga ttcactagcc aattcatcca aagagatcaa 3000 gtcaaatggt gttttggatc atgtgacatt taattttcac aagaggctta agttggttga 3060 acctgatttg acaatagtgg atgtcaaggt ggactcttcc agagcaggga aattgctcaa 3120 gagtcttatg gatggcatga ctggaattgt ttctcacaac tcgacccacg agggatggag 3180 aatgatcaaa ggaataaaca gcacctctga aatgaggtca ttcatgagca tggtgagagg 3240 ccaaagtgag gagatcaaag gtgatctgtt tgacaaggtt caagaattga atttcatgaa 3300 ggttagaatt tatggaattt ttggatttgc tggatctggg aagagccatg caatacaaaa 3360 tttaattcaa tctgaattca aaggctctca gggagtgatg gttatctgtc ccaggagatt 3420 tctggcgaag gattggaatg aaaagggggt ggatgaaaag gacatcaaaa cttttgaaag 3480 cgcactaaag tcagatgtta aagggaagag gttattcata cttgatgaag tcagtttatt 3540 acccaagggc ttcacggacc tgcttatgct caaaatgcac atggaaggga tcttgaggaa 3600 gtcgacaatt gtatgcattg gtgacccact tcaagctggg tacttctgtc ctaaggatga 3660 caactatctg tctagggaag gagagattaa gcggcttttc aaagagggtg tgaattacaa 3720 gtggtacagc tacaggatca acaagtttgt agctaaaaaa ctggccattg agacaatgaa 3780 tgacttcatc ggcatagatg aacaaagttc aatttacaaa gacatgcctt ctgctcatca 3840 tttcatggag aagaaaggga atcacataga agtaattctt gttgccagca tggttgaaaa 3900 ggagctttac tcaaactacg gtaacgtgat gacttttggt gagtcacagg gtctgacttt 3960 caattgtggt gtgattgtcc tctctgagga agccaagctg tgctctgatg cacacataat 4020 ggtggcagtg acaagattta gaagaggttt ctgctttgca ttgggaagca aaggttcaaa 4080 ggaggactac atgaggtcaa tgaaaagcgg gctactccag agaatgtgct ctggtatcgg 4140 ggcttcaaaa gaatttatcc tgggatcctc ctctgttaat cttattctaa gtgaaaagga 4200 cattaccaaa ggagcaggtg ttgatgagat ggacagagaa gcaaggttag aaggtgatgt 4260 ttggcttaag agtatgatat accttggaaa gagatatcac ataatagagc cacttggtca 4320 ggtgatcaag ttaactgatg gtgcaattaa gtgtcacatt ccggtctgtt caagtcaaac 4380 cctgggccct gagttagacc gcatccaggc gagagaattc agggaattca aaggaaagaa 4440 tggatggtca aatcaattca gagaagaggc tgggccaaat tggaagtttc cttatcgagt 4500 caatcaagca atgagttacg aggctgtgta ccccaggcac aaaatggacg atgatctcac 4560 cttcctggct gccataaaga aaaggcttcg atttgacaat gctgcaaaca attacgcaaa 4620 gttcaaggca gctgaaagca ggggaaagta tcttgcaaag gtctttctca agcatgtccc 4680 aatcaaatgt ggaagggatc agagacttct ggatcaatgc agacaggaat ttgaagaaac 4740 aaaactttcg aaaagcgctg ccaccattgg tgcacactct caaaggtctg attcagattg 4800 gccattggat aaaatttttc tgttcatgaa atcgcagttg tgcacgaaat ttgaaaagag 4860 attcactgaa gccaaagctg gtcagactct ggcttgcttt ccgcataaga ttcttgtaga 4920 attcagccca tggtgtaggt acacagagaa ggttctcact gcgaatctac cggacaatta 4980 ctacattcat caaaggaaaa atttttgtga attggaagat ttcgcaagaa gattctcaaa 5040 tggatcgaca tgtgtagaat cggactatac agcatttgat gtttcacaag accacaccat 5100 cctggctttt gaagtggagt tactcaagca ctttggttgg gatgataaaa ttctccagag 5160 ttacattaaa atgaagtgca cgttgggttg caggttggga ggtttcgcaa ttatgagatt 5220 cacgggagag ttttcaactt tcttgttcaa tacccttgcc aacatggtgt ttacgttctg 5280 cagatatgag gtgcctgatg gaactccaat ttgctttgcg ggggatgaca tgtgcgcctt 5340 gagaaacttg agagagattg acactcatga gtttatcctg aataagttga gtttaaaagc 5400 aaaagttaac agaactaaag taccaatgtt ctgcggatgg cgattgtgtt gtgatggtct 5460 aatcaaggag ccttgcctaa tttatgaaag attgcaagtt gcgattgaaa atgggaggtt 5520 aatggatgtg atagactcat atttcttgga attttcattc gcctacaaat taggtgagag 5580 gctctattca catcttgaaa ttgaacaact gaattatcac caggttttga caaggttttt 5640 cataagaaat aagcatctat tgagagggga ttcaagacac agcatttctg aactcgagtg 5700 gttatccgac gaagatggcg atgatggtaa ggggtcacaa gttgaagatc gcagaagggg 5760 atattccaat tgctggggtg aaaagctcca gaatttattc tgacatcagc ccgttcaaga 5820 gggcatctga cctgatgatt cattggaatg aatttgtctt caaggtcatg cccgaggaca 5880 ttgcaggaga cggtttcaga ttagcctcaa tacctgtcat accttcttcc gaagtgcaag 5940 ctgtcctaag gaaaagagag agtacgaatt atgtgcattg gggggcactg tccatatcaa 6000 tcgatgcatt gttcagaaag aacgcagggg tgtctggttg gtgttatgtg tacgataaca 6060 gatgggaaac atttgagcag gccatgttgc agaaatttcg tttcaatctg gatagtggat 6120 ccgccacctt ggtgacttca cccaatttcc cagtctcatt ggatgatcca ggtttgtcca 6180 actcaatcag tgtggccgta atgtttgaga atcttaactt taaacttgag agctacccaa 6240 ttagtgtgag ggtaggtaac atgtgcaggt ttttcgacag cttcttgagt agtgtcaaga 6300 acaaagttga ttcaaacttt ttgcttgagt ctgcaaatgc agatccattg ggagcagggg 6360 cttttggctt tgagcaggat gatcaagtga gtgagctgtt caattacatc caaacagttc 6420 caactcaggc catcaggtca agggagcacg aaatcccaaa gggattattt gggatgatgg 6480 gaaagaagaa ggttaagtct tttgaatttg cttcaggttt gcgggatttg ggaaaaagaa 6540 aaccacaaag aggaagggca attgaaagat ctttgagtca gagagtggtt cctggattta 6600 ggtcccaggg tgagaaaagt gaatatcaag gtttatcaac tgacagtgat tttgaaaatt 6660 tcatcacaag aagtggaaaa agcaaagctg gggccaaatc cattacttca gaagggtcat 6720 ccactgataa catctctgca agagaatttc agtttgctag acaaaataag aagaaggagg 6780 atggcagcag ttctgaatct gcagctaaag gtggacgccg atttgagggc gttcttggtc 6840 gcagaaggca gaccccttca tggaaagaca ggggtaatcc tggaacagat gttggagtcc 6900 atcttcgcga acatagcaat ccaggggacg tcagagcaga cagagttcct ggacctgatg 6960 gtggaggtga agtcaatgga ggaccagaag gtgatagggt catacaatct gaaggagatc 7020 gtcaatatga tcaaggcctt caggactacc tcttcggatc cgaacatcag caacatgacc 7080 ttccggcaag tgtgtgaggc gtttgcaccc gaggcaagaa atgggttggt caaactcaag 7140 tataaagggg ttttcacgaa cctttttact acaatgccag aggttgggag caaatacccg 7200 gagctgatgt ttgattttaa taagggcctt aacatgttca tcatgaacaa ggctcagcag 7260 aaggtaataa ctaatatgaa ccgccgtctt ttgcagactg aattcgcaaa aagtgaaaat 7320 gaggcgaaac tctcgtctgt ctcaactgat ctttgcattt agtctattta ggaggtttgg 7380 tttgataaat aaaataaata aatagtgtgt ttgaatcaaa tgtttatgtt aaacatgttt 7440 gatgaatgaa caaactctcg aacccatgaa agagtataaa gagtcatggt atttaaattg 7500 gagtgtttag acttataata aatagcctgt agacttttaa atattttact ac 7552 //