ID JN634066; SV 1; linear; genomic RNA; STD; VRL; 6304 BP. XX AC JN634066; XX DT 18-DEC-2011 (Rel. 111, Created) DT 04-APR-2012 (Rel. 112, Last updated, Version 2) XX DE Youcai mosaic virus isolate Br, complete genome. XX KW . XX OS Youcai mosaic virus OC Viruses; Riboviria; Virgaviridae; Tobamovirus. XX RN [1] RP 1-6304 RA Ryu S.-Y., Hong J.-S., Rhee S.J., Lee G.P.; RT "Genome sequence and construction of an infectious cDNA clone of Ribgrass RT mosaic virus"; RL Unpublished. XX RN [2] RP 1-6304 RA Ryu S.-Y., Hong J.-S., Rhee S.J., Lee G.P.; RT ; RL Submitted (30-AUG-2011) to the INSDC. RL Dept. of Integrative Plant Science, Chung-Ang University, 72-1 Neri RL Daedukmyeon, Ansung, Gyeonggido 456-756, South Korea XX DR MD5; a0def7809a2f96017e158186199371a1. XX FH Key Location/Qualifiers FH FT source 1..6304 FT /organism="Youcai mosaic virus" FT /host="Brassica rapa subsp. pekinensis" FT /isolate="Br" FT /mol_type="genomic RNA" FT /country="South Korea" FT /collection_date="15-Oct-2007" FT /db_xref="taxon:228578" FT CDS 69..4862 FT /codon_start=1 FT /transl_except=(pos:3378..3380,aa:OTHER) FT /product="replicase large component" FT /note="contains readthrough stop codon" FT /db_xref="GOA:G9IAP6" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:G9IAP6" FT /protein_id="AEV92949.1" FT /translation="MAQFQQTVNMQTLQAAAGRNSLVNDLASRRVYDNAVEELNARSRR FT PKVHFSKSVSTEQTLLASNAYPEFEISFTHTQHAVHSLAGGLRTLELEYLMMQVPFGSL FT TYDIGGNFAAHLFKGRDYVHCCMPNLDVRDIARHEGHKEAIFSYLSRLDRQKRPVPEYQ FT RAAFNNYAENPHFVHCDRPFQQCELSTVNGADTYAIALHSIYDIPADEFGAALLRKNVK FT ICYAAFHFHESMLLDCDSVTLEDIGATFQRAGDKLNFFFHNESTLNYTHSFSNIIKYVC FT KTFFPASQRYVYHKEFLVTRVNTWYCKFTRVDTFTLFRGVYKTSVDSEEFYKAMDDAWE FT YKKTLAMLNSERTIFKDSAAMNFWFPKVRDMVIIPLFDASITTGRMSRREVLINKDFVY FT TVLNHIKTYQAKALTYANVLSFVESIRSRVIINGVTARSEWDTDKAILGPLAMTFFLVT FT KLSHVQDEIVLKKFQKFDATAKELIWSSLCDALIGVFPSVKETLARGGFVKLAEESLEI FT KIPELYCTFTDRLVLEYKRTEEFQSCDLSKPLEESEKYYNALSELSVLENLDSFDLDAF FT KELCQKKNVDPDVAAKVVVAIMNSELTLPFKKPTEEEVAEALSEKVVQNEGLSLSNNAP FT FPCVSNLKEGLVPACGVSPTSVNFDRVDMDISEFHLKSVDAVKKGAMMSAVYTGKIKVQ FT QMKNYVDYLSASLSATVSNLCKVLRDVHGVDPESQEKSGVWDVRRGRWLLKPNAKCHAW FT GVAEDANHKLVIVLLNWDEGKPVCDETWFRLAVSSDSLVYSDMGKLKTLTSCCRDGEPP FT EPTAKVVLVDGVPGCGKTKEILEKVNFSEDLVLVPGKEASKMIIRRANQAGVVRADKDN FT VRTVDSFLMHPPKRVFKRLFIDEGLMLHTGCVNFLTLLSHCDVAYVYGDTQQIPFICRV FT ANFPYPSHFAKLVVDEKEDRRVTLRCPADVTFFLNKKYDGAVLCTSSVERSVSAEVVRG FT KGALNPITLPLEGKILTFTQADKFELLDKGYKDVNTVHEVQGETYEKTAIVRLTATPLE FT IISRASPHVLVALTRHTTRCKYYTVVLDPMVNVISELEKLSNFILDMYKVESGTQXQLQ FT IDTVFKGTNLFVPTPKSGDWRDMQFYYDTLLPGNSTILNEFDAVTMNLRDISLNVKDCR FT IDFSKSVQVPKERPVFMKPKLRTAAEMPRTAGLLENLVAMIKRNMNAPDLTGTIDIEDT FT ASLVVEKFWDAYVIKEFSGMDGMAMTRESFSRWLSKQESSTVGQLADFNFVDLPAVDEY FT KHMIKSQPKQKLDLSIQDEYPALQTIVYHSKKINAIFGPMFSELTRMLLERIDTSKFLF FT YTRKTPAQIEEFFSDLDSSQAMEILELDISKYDKSQNEFHCAVEYKIWEKLGIDDWLAE FT VWRQGHRKTTLKDYTAGIKTCLWYQRKSGDVTTFIGNTIIIAACLSSMIPMDKVIKAAF FT CGDDSLIYIPKGLDLPDIQAGANLTWNFEAKLFRKKYGYFCGRYVIHHDRGAIVYYDPL FT KLISKLGCKHIRDEVHLEELRRSLCDVTSNLNNCAYFSQLDEAVAEVHKTAVGGAFVYC FT SIIKYLSDKRLFKDLFFV" FT CDS 4874..5671 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:G9IAP7" FT /db_xref="InterPro:IPR001022" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:G9IAP7" FT /protein_id="AEV92950.1" FT /translation="MSYEPKVSDFLALTKKEEILPKALTRLKTVSISTKDVISVKESES FT LCDIDLLVNVPLDKYRYVGVLGVVFTGEWLVPDFVKGGVTVSVIDKRLENSRECIIGTY FT RAAAKDRRFQFKLVPNYFVSVADAKRKPWQVHVRIQNLKIEAGWQPLALEVVSVAMVTN FT NVVVKGLREKVIAVNDPNVEGFEGVVDDFVDSVAAFKAIDSFRKKKKKIGGKDVNNNKY FT RYRPERYAGPDSLQYKEENVLQHHELESVPVFRSDVGRAHSDA" FT CDS 5595..6068 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:G9IAP8" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:G9IAP8" FT /protein_id="AEV92951.1" FT /translation="MSYNITSSNQYQYFAAMWAEPTAMLNQCVSALSQSYQTQAARDTV FT RQQFSNLLSAIVTPNQRFPESGYRVYINSAVLKPLYEALMKSFDTRNRIIETEEESRPS FT ASEVANATQRVDDATVAIRSQIQLLLNELSNGHGLMNRAEFEVLLPWTTAPAT" XX SQ Sequence 6304 BP; 1797 A; 1185 C; 1584 G; 1738 T; 0 other; gttttaattt tattgcaaca acaacaacaa attacaataa caacaaaaca aatacaaaca 60 acaacaacat ggcacaattt caacaaacag taaacatgca aacattgcag gctgccgcag 120 ggcgcaacag cctggtgaat gatttagctt ctcgacgcgt ttatgataat gctgtcgagg 180 agttgaatgc acgctcgaga cgccctaaag ttcatttctc caaatcagtg tctacggaac 240 agacgctgtt agcttcaaac gcttatccgg agtttgagat ttccttcact catacccaac 300 acgccgtgca ttcccttgcg ggtggcttaa ggactcttga gttggagtat ctcatgatgc 360 aagttccgtt tggttctcta acgtacgaca ttggtggtaa ctttgctgcg caccttttta 420 agggacgcga ttacgttcac tgctgtatgc cgaatttgga tgtccgtgat atagctcgtc 480 acgaagggca caaggaggca attttcagtt acctctctcg cctagatagg cagaagcgtc 540 ctgtcccaga atatcagaga gcggcgttca ataattacgc ggagaatcct catttcgttc 600 attgtgatcg accattccag cagtgtgagc tcagcaccgt caacggtgca gatacttacg 660 ctattgcgct tcatagtata tacgatattc ctgctgatga gtttggtgct gcacttctta 720 ggaagaatgt caagatttgt tacgcggctt tccattttca cgaaagcatg ctcctagact 780 gtgactctgt cactttggag gatattggag ccacattcca gcgtgctggt gacaagctga 840 acttcttctt tcacaacgag agcacactta actacaccca tagttttagt aatataatta 900 agtacgtgtg taagaccttc tttcctgcga gtcagaggta tgtgtaccat aaggagtttt 960 tagttactag agtcaatacg tggtattgta agtttactag agtcgacact tttactcttt 1020 tccgtggtgt gtataagacg agtgtggata gcgaagagtt ctataaggct atggacgacg 1080 cgtgggagta caagaagaca ctggctatgc tcaattccga gaggaccatc ttcaaggata 1140 gtgccgccat gaacttctgg tttccgaagg ttagagatat ggttatcata ccactctttg 1200 acgcatctat cacaactgga aggatgtcga ggagagaagt attgataaac aaggactttg 1260 tttacacggt ccttaaccat attaaaacct atcaagcaaa ggccttaaca tacgctaatg 1320 tgttgtcttt cgttgagtct attaggtcta gagttataat taacggtgtc actgccaggt 1380 cggaatggga tactgacaag gcaatcttag gtccgttagc catgacattt ttccttgtca 1440 cgaagttgag tcatgttcag gacgaaatcg tccttaagaa gtttcaaaag tttgacgcca 1500 ctgccaaaga actgatttgg tcaagtctct gcgatgccct gataggggta tttccctcgg 1560 tcaaggagac acttgcacgt ggtggtttcg ttaagcttgc tgaagagagt ttagagatca 1620 aaattccaga gttatactgc acctttaccg acaggttagt gcttgagtat aagaggacag 1680 aggagtttca gtcgtgtgat ctgtccaaac ctttggaaga gtctgagaaa tactataatg 1740 cattatccga gctatctgtg cttgagaatc ttgactcgtt tgatctggat gcctttaagg 1800 agctgtgtca aaagaagaac gtcgacccgg atgtcgctgc gaaggtggtg gtggcgatta 1860 tgaatagtga actgacgtta ccgttcaaga aacctacgga agaggaagtt gctgaggcgc 1920 ttagcgaaaa agtggtacag aatgaggggt tgagtttaag caacaacgca cccttcccat 1980 gtgtaagcaa tctcaaggaa ggtttggttc cggcgtgtgg agtgagtccg acaagtgtga 2040 acttcgacag agtggatatg gacatatctg agttccatct caagagtgta gatgcagtta 2100 aaaagggggc tatgatgtca gcggtgtaca cgggaaagat taaggttcaa caaatgaaga 2160 actacgtcga ttacctaagt gcctcattgt cagctacggt ctcaaacctc tgtaaagtgc 2220 ttagggatgt tcacggtgtt gaccctgaat ctcaagagaa gtcgggtgtg tgggatgtga 2280 gaagaggacg ctggttattg aaacctaacg cgaaatgtca cgcttggggt gttgcggaag 2340 atgctaatca caagttagtt atcgtgttac ttaactggga tgaagggaaa cctgtctgtg 2400 atgagacgtg gttcagattg gcggtttcta gcgactcttt agtgtactcg gatatgggta 2460 aactcaagac gttaacgtca tgttgtagag atggtgagcc tccggaacct acggcgaaag 2520 tggtgctagt tgacggtgtt ccaggctgtg gaaaaacaaa ggaaatcttg gagaaggtta 2580 acttttctga agacttagtg ttggttcctg gaaaagaggc gtcgaagatg attattcgaa 2640 gagcaaacca agcgggcgtc gtaagagctg ataaggataa cgtaaggacg gtggattcct 2700 tcttgatgca ccctccaaaa agggtgttca aaaggctgtt tatcgatgaa ggactaatgt 2760 tgcacacagg ttgtgttaac tttttgacgt tgctatctca ctgtgatgtg gcatacgttt 2820 acggtgacac acaacaaatt ccctttatct gtagggttgc gaattttcct tatcctagtc 2880 attttgcgaa gcttgttgtg gacgagaagg aagacagaag ggttacactc aggtgtccgg 2940 cggacgttac attcttcttg aataagaagt acgatggtgc agttctgtgt acaagttccg 3000 tggagaggtc ggttagtgca gaggtcgtga gaggaaaagg tgctttaaac ccaataactt 3060 taccgttaga ggggaaaatt ctcactttca cacaagccga taagttcgaa ttgttagaca 3120 agggctacaa agacgtaaac acggttcatg aagtgcaagg cgagacgtac gaaaagacag 3180 ctattgttcg gttgacagca actcccttag agatcatatc aagagcgtca cctcatgttt 3240 tggtggcgtt gacaaggcac accacacggt gtaaatatta cacagttgtg ctagacccaa 3300 tggtaaacgt gatttctgaa ttggagaaac tgtccaactt cattcttgac atgtacaagg 3360 tggagtcggg aacccaatag caattacaga tcgacacagt gttcaagggg acaaatttgt 3420 tcgtccctac gcctaagtca ggagattggc gagacatgca gttctattat gacactcttc 3480 ttcccggaaa cagtactatt cttaacgaat ttgatgctgt aaccatgaat ttgagggaca 3540 tttccttaaa cgtcaaggac tgtaggatcg acttctcaaa atcagtgcaa gtgccgaagg 3600 aacgaccggt tttcatgaaa cccaaattga ggacggcggc agaaatgccg cgtactgccg 3660 ggttacttga aaaccttgtc gcgatgatca aaagaaatat gaacgcacca gatctgacag 3720 ggacgattga tatagaggac actgcgtcgt tagtagttga aaagttttgg gatgcgtatg 3780 tgataaaaga attcagcgga atggacggta tggctatgac gagggaaagt ttttctagat 3840 ggctctctaa acaagagtcg tctacagttg gtcagttagc ggatttcaac tttgtggatt 3900 tgccggcagt ggacgagtat aagcatatga tcaaaagcca acccaaacag aaattagact 3960 tgagcattca ggacgaatac cctgcgttgc agacgatagt ctatcattca aaaaagatca 4020 atgcgatttt tggtcctatg ttttcagagt taacgaggat gctccttgag agaatagata 4080 cttccaagtt tctgttttac actaggaaga cacctgcgca gattgaagaa tttttctctg 4140 atttggattc gtcacaagcg atggagattc tggagctcga catttcaaag tacgacaagt 4200 cacaaaacga gttccattgc gctgttgagt acaagatatg ggaaaagctt ggtattgacg 4260 attggttagc ggaggtgtgg agacaaggac ataggaaaac gactctcaaa gattatacgg 4320 ccggcataaa gacatgtttg tggtatcaaa ggaaaagcgg tgatgtgact accttcattg 4380 ggaacacaat tatcattgct gcgtgtttga gctctatgat cccgatggac aaagtgatca 4440 aggcggcttt ctgcggtgac gacagtttga tatatattcc gaaaggtcta gacctaccgg 4500 atattcaagc tggagccaac cttacgtgga actttgaagc caaattgttc aggaaaaagt 4560 acggatattt ttgcggtcgt tacgttattc accacgatag aggagccatt gtgtattatg 4620 atccacttaa gttgatatct aaattaggat gtaaacatat tagagatgaa gttcacctag 4680 aagagttgcg tagatccttg tgtgatgtaa ctagtaattt aaataattgt gcgtattttt 4740 cacagttaga tgaggccgtt gccgaggttc ataagaccgc ggttggcgga gcgtttgttt 4800 actgtagtat aattaaatat ttgtcagata aaaggttgtt taaagatttg ttttttgttt 4860 gactgagtca ataatgtctt acgagcctaa agtaagtgac ttccttgccc ttacgaaaaa 4920 ggaggaaatt ttacccaagg ctttaacgag attaaagact gtctctatta gtactaagga 4980 tgttatatct gttaaggagt ctgagtccct gtgtgatata gatttgttag tgaatgtgcc 5040 attagataag tatagatatg tgggtgttct gggtgttgtt tttaccggtg aatggctagt 5100 gccggatttc gttaaaggtg gggtgacagt gagcgtgatt gacaaacggc ttgaaaactc 5160 cagagagtgc ataattggta cgtacagagc tgctgcgaag gacagaaggt tccagttcaa 5220 gctggttcca aattacttcg tgtccgttgc ggatgccaag cgaaaaccgt ggcaagttca 5280 tgtgcgtatt caaaatttga agattgaagc tggatggcaa cctctagctc tagaggtggt 5340 ttctgttgcc atggtcacaa ataacgtggt tgttaaaggt ttgagggaaa aggtcatcgc 5400 agtgaatgat ccgaacgtcg aaggtttcga aggtgtggtt gacgatttcg tcgattcggt 5460 tgcagcattc aaggcgattg acagtttcag aaagaaaaag aaaaagattg gaggaaagga 5520 tgtaaataat aataagtata gatatagacc ggagagatac gccggtcctg attcgttaca 5580 atataaagaa gaaaatgtct tacaacatca cgagctcgaa tcagtaccag tatttcgcag 5640 cgatgtgggc agagcccaca gcgatgctta accagtgcgt gtctgcgttg tcgcaatcgt 5700 accaaactca agcggcaaga gatactgtta gacagcaatt ctctaacctt ttgagtgcga 5760 ttgtgacacc gaaccagcgg tttccagaat caggataccg ggtgtatatt aattcagcag 5820 ttctaaaacc gttgtacgaa gctcttatga agtcctttga tactagaaat aggatcattg 5880 aaactgaaga agagtcgcgt ccatcggctt ccgaagtagc taatgcaaca caacgtgttg 5940 atgatgcgac tgtggccatt aggagtcaaa ttcagctttt gctgaatgag ctctcgaacg 6000 gacatggtct tatgaacagg gcagagttcg aggttttact accttggact actgcgccag 6060 ctacataggc gtggtgcaca cgatagtgca tagtgttttt ctctccactt aaatcgaaga 6120 gatatactta cggtgcaatt ccgcaagggt ggcgtaaacc aaattacgca atgttttagg 6180 ttccatttaa atcgaaacct gttatttcct ggatcacctg ttaacgtacg cgtggcgtat 6240 attacagtgg gaataactaa aagtgagagg ttcgaatcct ccctaacccc gggtaggggc 6300 ccca 6304 //