ID JN624386; SV 1; circular; genomic DNA; STD; VRL; 2752 BP. XX AC JN624386; XX DT 23-JAN-2012 (Rel. 111, Created) DT 08-AUG-2012 (Rel. 113, Last updated, Version 2) XX DE Watermelon chlorotic stunt virus isolate Als-5 segment A, complete DE sequence. XX KW . XX OS Watermelon chlorotic stunt virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2752 RX DOI; 10.3390/v4071169. RX PUBMED; 22852046. RA Khan A.J., Akhtar S., Briddon R.W., Ammara U., Al-Matrooshi A.M., RA Mansoor S.; RT "Complete nucleotide sequence of watermelon chlorotic stunt virus RT originating from oman"; RL Viruses 4(7):1169-1181(2012). XX RN [2] RP 1-2752 RA Khan A.J., Haq Q.M.I., Shahid M., Ammara U., Al-Amri K.N., Al-Shihi A.A.; RT ; RL Submitted (26-AUG-2011) to the INSDC. RL Department of Crop Sciences, College of Agricultural and Marine Sciences, RL Sultan Qaboos University, P.O. Box-34, Al-Khod 123 Muscat, Sultanate of RL Oman XX DR MD5; 118da0cff288982ce4291982f32079b5. XX FH Key Location/Qualifiers FH FT source 1..2752 FT /organism="Watermelon chlorotic stunt virus" FT /segment="A" FT /host="squash" FT /isolate="Als-5" FT /mol_type="genomic DNA" FT /country="Oman" FT /collection_date="01-Apr-2011" FT /db_xref="taxon:35341" FT gene 155..514 FT /gene="AV2" FT CDS 155..514 FT /codon_start=1 FT /gene="AV2" FT /product="pre-coat protein" FT /db_xref="GOA:H2DKQ1" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:H2DKQ1" FT /protein_id="AEX93484.1" FT /translation="MWDPLLNDFPESVHGFRCMLAVKYLQAVESTYEPNTLGHELIRDL FT ILVLRARDYGEANRRYSHFHSRFEGSSKTELRQPLHEPCSCPHCPRHKQATTMGQQAHV FT SKAQDVQDVSKPRCP" FT gene complement(219..986) FT /gene="AC5" FT CDS complement(219..986) FT /codon_start=1 FT /gene="AC5" FT /product="AC5 protein" FT /db_xref="InterPro:IPR006892" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:H2DL30" FT /protein_id="AEX93485.1" FT /translation="MILILRRLLVVVDHMIVHTIEAFYQRLLLHPRGATDHGGMKLSHN FT LETIAKIVLNCRSAGLVVEHIKNLSEVHWTGPIWTTVTNKKEHDLIRMILFFYVLIHPD FT LAKNVFRLHTKPFSDTMSDSTPPSNITDTPDDTGVLNVVSLFVRLNFAWAFTALRDIWA FT SIHPVHPGLSIHGPVGPLSSLACDEDSGGKSTAHVGAVEVQFSTNLRNGSGNENISCSL FT RHNHGPGGQESDRGSIRGPKYWARRSIQRPAST" FT gene 315..1091 FT /gene="AV1" FT CDS 315..1091 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /note="involved in encapsidation" FT /db_xref="GOA:H2DL31" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:H2DL31" FT /protein_id="AEX93489.1" FT /translation="MAKRTGDILISTPVSKVRRKLNFDSPYMSRALAPTVLVTSKRRQW FT ANRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGIVRCVSDVTRGSGITH FT RVGKRFCVKSKYILGKIWMDENIKKQNHTNQVMFFLVRDRRPYGSSPMDFGQVFNMFDN FT EPSTATVKNDLRDRFQVMRKFHATVVGGPSGMKEQALVKRFYRVYNHVVYNHQESAKYE FT NHTENALLLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1088..1492) FT /gene="AC3" FT CDS complement(1088..1492) FT /codon_start=1 FT /gene="AC3" FT /product="AC3 protein" FT /db_xref="GOA:H2DKR8" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H2DKR8" FT /protein_id="AEX93486.1" FT /translation="MDSRTGEYITADQAWNGVFTWTINNPLYFTITDHHQRPFLCQHDI FT INMQIRFNHNLRRALGIHKAFLNFRIWTTLRPQTGRFLRVFRTQVLKYLDMLGVISLNL FT VVRAVSHVLENVLVGTIDVQENHVIKFDVY" FT gene complement(1233..1640) FT /gene="AC2" FT CDS complement(1233..1640) FT /codon_start=1 FT /gene="AC2" FT /product="AC2 protein" FT /db_xref="GOA:H2DL33" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H2DL33" FT /protein_id="AEX93487.1" FT /translation="MPNSSSSQNLSSQPSIKIKHRLAKKKTIRRRRVDLKCGCSYYLHI FT SCQNHGFSHRGIHYCGSSMEWRVYLDDKQPPIFHDNRPPPTPLSLPARHNKHANTIQPQ FT PSEGVGDSQSFPELPNLDDFTASDWSFLKGI" FT gene complement(1540..2625) FT /gene="AC1" FT CDS complement(1540..2625) FT /codon_start=1 FT /gene="AC1" FT /product="Rep" FT /note="replication associated protein" FT /db_xref="GOA:H2DL34" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H2DL34" FT /protein_id="AEX93490.1" FT /translation="MRPPRFRIQAKNIFLTYPRCSLSKEELLSFLVGLSLPSNLKYVKV FT CRELHQNGEPHLHVLLQFDGKITITDNRLFDHVHPSRSACFHPNIQSAKSSTDVKSYLD FT KDGDTVEWGKFQIDGRSARGGQQTANDAYATALNMSNKGEAMSVIKELAPKDFVLHYHN FT IKSNLDRIFEEPVAPFVCPFPISSFTLLPPELVEWASTNVCSSAARPWRPKSIVVEGES FT RTGKTMWARSLGPHNYLCGHLDLSPKIYSNDAWYNVIDDVDPHYLKHFKEFMWAQRDWQ FT SNTKYGKPIQIKGGIPTIFLCNPGPSSSYKEFLEEEKNYALKEWADKNAEFVFLSEPLF FT SAEHQDQTQTRQKEDDSATTS" FT gene complement(2328..2471) FT /gene="AC4" FT CDS complement(2328..2471) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="UniProtKB/TrEMBL:H2DL35" FT /protein_id="AEX93488.1" FT /translation="MGNLISMCSCSSTERSPSQTIASSIMYTQAVAPVSTPTYKALSPV FT QT" XX SQ Sequence 2752 BP; 701 A; 620 C; 687 G; 744 T; 0 other; accggatgcc cgcggagaaa aaaggggacc ccacaggaca cgtgcaccaa tgaaattgcg 60 tgctttgagg taaattagct ggaaatgggg ttttgaaagc gacaagtctt acgagtcgta 120 tttatagtgc tgctgcggat caacttttgt caggatgtgg gatccattgc ttaatgactt 180 tcccgagtcg gttcacggtt ttcggtgtat gctagctgtc aagtacttgc aggccgttga 240 atcgacctac gagcccaata ctttgggcca cgaattgatc cgcgatctga ttcttgtcct 300 ccgggcccgt gattatggcg aagcgaacag gagatattct catttccact cccgtttcga 360 aggttcgtcg aaaactgaac ttcgacagcc cctacatgag ccgtgctctt gcccccactg 420 tcctcgtcac aagcaagcga cgacaatggg ccaacaggcc catgtatcga aagcccagga 480 tgtacaggat gtatcgaagc ccagatgtcc ctaagggctg tgaaggccca tgcaaagttc 540 agtcgtacga acaacgagac gacgttaagc acaccggtat cgtccggtgt gtcagtgatg 600 ttactagggg gagtggaatc actcatcgtg tcggaaaaag gttttgtgtg aagtctaaat 660 acattcttgg caagatctgg atggatgaga acataaaaaa acaaaatcat acgaatcagg 720 tcatgttctt tcttgttcgt gaccgtcgtc catatgggtc cagtccaatg gacttcggac 780 aggtttttaa tatgttcgac aacgagccca gcactgcgac agttaagaac gatcttcgcg 840 atcgtttcca agttatgcga aagtttcatg ccaccgtggt cggtggcccc tctgggatga 900 aggagcaggc gctggtaaaa cgcttctatc gtgtgtacaa tcatgtggtc tacaaccacc 960 aagagtctgc gaagtatgag aatcatactg agaatgcgtt gttattgtat atggcgtgta 1020 cacacgcatc gaatcctgtg tatgcaacat tgaaaattcg gatatatttt tatgactcag 1080 ttacgaatta ataaacatcg aattttatta cgtgattttc ttgtacatcg attgtcccaa 1140 caaggacatt ttccaataca tgacttacgg ccctaacaac caaatttaga ctaattacac 1200 ctaacatatc gaggtatttt agaacctgcg ttctaaatac ccttaagaaa cgaccagtct 1260 gaggccgtaa agtcgtccag attcggaagt tcaggaaagc tttgtgaatc cccaacgccc 1320 tccgaaggtt gtggttgaat cgtatttgca tgtttattat gtcgtgctgg caaagaaagg 1380 ggcgttggtg gtggtctgtt atcgtgaaat atagggggtt gtttatcgtc caggtaaaca 1440 cgccattcca tgcttgatcc gcagtaatgt attccccggt gcgagaatcc atgattctgg 1500 cacgagatat gcaggtaata tgagcaaccg cactttagat caactcgtcg tcgccgaatc 1560 gtcttctttt tggcgagtct gtgtttgatc ttgatgctcg gctgagaaga gaggttctga 1620 gaggaagacg aattcggcat tcttatccgc ccactctttt agtgcatagt tcttctcctc 1680 ctctagaaac tctttatacg aagaagatgg gcccggattg caaaggaaga tagtgggtat 1740 tccgccttta atttgaatcg gctttccgta tttcgtgttg ctttgccaat cacgctgggc 1800 ccacatgaac tctttaaagt gctttagata atgcgggtcg acgtcatcaa tgacgttgta 1860 ccacgcatcg ttgctgtaga tctttggact caggtcaagg tgaccacata ggtaattatg 1920 tggtcctaat gatcgggccc acatcgtctt tcccgtacga ctctcaccct ctaccacgat 1980 actcttcggt ctccacggcc gcgcagcgga agagcaaacg ttcgttgatg cccactcaac 2040 gagttcaggc ggtagcaacg tgaaagacga tatcggaaaa ggacaaacaa aaggagccac 2100 aggttcttca aagattcgat ccaaatttga cttgatattg tggtagtgaa ggacgaagtc 2160 cttcggtgcg agctccttga tcacagacat agcctcccct ttattactca tgttaagcgc 2220 cgtggcgtag gcgtcgttag ctgtctgttg tccacccctt gcagatcgac cgtcgatttg 2280 aaacttgccc cactcgacgg tgtcgccgtc cttgtccagg taagacttca cgtctgtact 2340 ggacttagcg ctttgtatgt tggggtggaa acaggcgcta cggcttgggt gtacatgatc 2400 gaagaggcga ttgtctgtga tggtgatctt tccgtcgaac tgcaggagca catggagatg 2460 aggttcccca ttctggtgca gttctctgca caccttgacg tattttaggt tcgacggaag 2520 ggagaggccg actagaaagg aaagtagctc ttctttggag agagagcacc tgggatatgt 2580 gaggaaaatg tttttcgctt gtattctaaa acggggaggc ctcatgttga ccagtcaatt 2640 ggagacaccc cccagatcac taacccctgt atattggaga ctggagacaa tatatagaag 2700 tagtaagagg tactactagg attttgacac gtagcgggca tcctataata tt 2752 //