ID JN620802; SV 1; linear; genomic RNA; STD; VRL; 4138 BP. XX AC JN620802; XX DT 10-MAY-2012 (Rel. 112, Created) DT 29-JAN-2013 (Rel. 115, Last updated, Version 3) XX DE Artemisia virus A, complete genome. XX KW . XX OS Artemisia virus A OC Viruses; Riboviria; Solemoviridae; Sobemovirus. XX RN [1] RP 1-4138 RX DOI; 10.1007/s00705-012-1507-4. RX PUBMED; 23053528. RA Ramel M.E., Gugerli P., Besse S., Simonnet X., Balmelli C.; RT "Molecular characterization of artemisia virus A, a new sobemovirus RT isolated from Artemisia annua"; RL Arch. Virol. 158(2):463-466(2013). XX RN [2] RP 1-4138 RA Ramel M.E., Gugerli P., Besse S., Simonnet X., Balmelli C.; RT ; RL Submitted (26-AUG-2011) to the INSDC. RL Virology, ACW, Rte de Dullier 50, Nyon, VD 1260, Switzerland XX DR MD5; 7dbac8ba3460cacb3ea80e98f9ff5f48. DR EuropePMC; PMC3791421; 23830075. XX FH Key Location/Qualifiers FH FT source 1..4138 FT /organism="Artemisia virus A" FT /host="Artemisia annua" FT /mol_type="genomic RNA" FT /country="Switzerland" FT /collection_date="2004" FT /db_xref="taxon:1133751" FT 5'UTR 1..80 FT CDS 81..470 FT /codon_start=1 FT /product="ORF1" FT /db_xref="UniProtKB/TrEMBL:I1WZY6" FT /protein_id="AFI72875.1" FT /translation="MSSVIFAFGVSKTYPTIVEKYCGSSKKVFFRGLAPGIETSLTVDS FT PIKVKVAKWNRDSVDELEITCKCETCGAKAFEILEFKYADNGDEIWETEVVADWCSYCE FT TKKLFDSGDTEHYTPCPSPPAPISN" FT CDS join(549..1838,1838..3418) FT /codon_start=1 FT /ribosomal_slippage FT /product="ORF2b" FT /EC_number="2.7.7.48" FT /note="RNA-dependent RNA polymerase" FT /db_xref="GOA:I1WZY5" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:I1WZY5" FT /protein_id="AFI72874.1" FT /translation="MKLSNLMTLTMLAGLVSVMIDMYQSPQWSLAYWLSLSLWIAALML FT QFAWLSWPRVCLEPEPVKTELWGEMLGDPEFDPAKGIVASVLYGTETIKVVIQPKWWQY FT FSSDVLRSEKEGACIGSPVSLIEPGKEPNYLVVIQDENGFTRGMASRVQIGRNDVMLTA FT FHVIDTAEKLYMAKFSNNERTGRRVEIDFQNWKLDFASRDARIDVASVFVPQKVWSSLG FT VKSAKVKIPTAERKPVQVFGADSSSAFKSSVGLGTFVSEFTGEHSATTTKGWSGSPVIS FT NGCVIGVHRGVDLDKVNSNKFTIIHQSFFPPGLETMYDYGHIRELDEEQFETRENEFAE FT AYLNGRGKIFFSENEFYLDSSKRPQYVPKGRDWREAELEEDDDFFEDKAFLQSVKRDFG FT AESGGGPPDKVDDLPFGFSVARTRRDAEGYSFKRRTGGESPILSALYSLGGYSFTGGRP FT IGTTGMPLVDVGKSGVKFREASRTALSERAISARNSFPELEDFDWPERGSAAELDSLLF FT QATRFKATPEPDNIREAVEQLVKEYPRAPQRNCFKGDWDSAAVKAKIEKIAKTEVKRDS FT SPGVPFACLGITNGSVIDNHMQLVVESVYARLELLSKVELSDELTAVDLVRLGLCDPVR FT LFVKQEPHPKRKIETRRFRLISSVSLVDQLVERLLFGYQNQLEIAMWKTCPSKPGMGLS FT EGSQADAIWEQVAYKHTTCPAVEADISGFDWSVQEWELRADVEMRIFLGGFHEKVARAA FT RNRFKCLSLSVFQLSNGTLIAQAIPGLMKSGSYCTSSSNSRIRCLMAKLIGSPWCIAMG FT DDSVEGYVPGAQEAYRKLGHDCKDYQLCEASYQKTGTKLISFNFCSHYLSKRKFYLTSW FT PKTFLRYLDSENPQYLNLFAELQSSPIWPKIQRYIRRKNLASDKIFIEEDDEEEADEXQ FT QWKRAATATSHPAHSAAQWSGIGIRC" FT CDS 549..2303 FT /codon_start=1 FT /product="ORF2a" FT /note="protease; VPG" FT /db_xref="GOA:I1WZY7" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:I1WZY7" FT /protein_id="AFI72876.1" FT /translation="MKLSNLMTLTMLAGLVSVMIDMYQSPQWSLAYWLSLSLWIAALML FT QFAWLSWPRVCLEPEPVKTELWGEMLGDPEFDPAKGIVASVLYGTETIKVVIQPKWWQY FT FSSDVLRSEKEGACIGSPVSLIEPGKEPNYLVVIQDENGFTRGMASRVQIGRNDVMLTA FT FHVIDTAEKLYMAKFSNNERTGRRVEIDFQNWKLDFASRDARIDVASVFVPQKVWSSLG FT VKSAKVKIPTAERKPVQVFGADSSSAFKSSVGLGTFVSEFTGEHSATTTKGWSGSPVIS FT NGCVIGVHRGVDLDKVNSNKFTIIHQSFFPPGLETMYDYGHIRELDEEQFETRENEFAE FT AYLNGRGKIFFSENEFYLDSSKRPQYVPKGRDWREAELEEDDDFFEDKAFLQSVKRDFG FT AESGGGPPDKVDDLPFGFSVARTRRDAEGYSLNGERAGKVQSSPPCTPSVATPSQVDDQ FT SEQLGCPSLTLENRVSNLEKLLEPLLVSVQSLQEIASLNSKILTGLNAEALRNSIPSCS FT KPPASKPPPSPTTSGKQSSNLSKSTPEHPKETASKETGTQQPSKPKSKRSRRRKSKGTP FT PQGSPLPA" FT CDS 3309..4010 FT /codon_start=1 FT /product="ORF4" FT /db_xref="GOA:I1WZY8" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:I1WZY8" FT /protein_id="AFI72877.1" FT /translation="MTKKKQTXSNNGNGQRRRRRTRPIPLPSGAELGSVVRAPSAMSHN FT VRKRNQIIRQSTLGEMCIGTESTPLLATHATANTEVIGFVNIDVRNSTQLNRLSIIGSA FT FSKFRVLKMTAVYSPEIATNISGAIAMALIYDSADVVAANWNIQRILATDKAVKSNLWT FT MSPPIRYDNRLAAKPWYISGTTAGVGAQNEQTPVTIVYGYYSNSTNIPTGRIDVHYEVE FT LVQPIAPLANT" FT 3'UTR 4011..4138 XX SQ Sequence 4138 BP; 1138 A; 922 C; 1031 G; 1046 T; 1 other; caaaattatt taagaggttt tatgtctatc gcttataaag ctgtcagttt tactcttaat 60 aaattaacat catttactgt atgtcttcag tgattttcgc gtttggcgtg agcaaaactt 120 atccaactat tgttgagaag tactgtggca gtagcaagaa ggttttcttc cgtggattgg 180 ctcctggaat tgagacatct ttgactgttg attctccaat aaaggtgaaa gttgcgaagt 240 ggaacaggga ttcagtggac gaactagaga taacctgcaa gtgtgaaact tgtggtgcga 300 aagcttttga gatcttagag ttcaagtacg ctgataacgg agacgaaatc tgggaaacag 360 aggtcgtcgc tgactggtgt tcatactgtg agaccaagaa attgtttgac tccggtgata 420 ctgaacacta tactccctgt cctagcccgc ctgctccgat ttcaaactga aagaccgtgc 480 gatatccagt agacgggttt ctcttttcga gaaatatcgt aaccattggt tttgttgcac 540 ttatcacaat gaagttatcc aatttgatga ctttgacgat gttggccgga ctggtttcag 600 tcatgatcga catgtaccag agtcctcagt ggagcctagc ctactggcta agcctaagcc 660 tatggatagc agcacttatg ctgcaattcg cctggctaag ctggccgaga gtgtgtctcg 720 aaccagaacc ggtgaaaact gagttgtggg gcgagatgct cggtgatcct gagttcgacc 780 ctgcaaaggg aatcgtcgcc tcggtgcttt atggcactga gaccataaag gttgtgatcc 840 aacccaagtg gtggcagtac ttttcctccg acgtattaag gagtgagaag gaaggcgcgt 900 gtattggctc tccagtgtct cttattgaac ctggaaagga accgaactac ctcgtcgtaa 960 ttcaggacga gaatggattc acccgaggca tggcttcaag agttcagatt ggaaggaatg 1020 atgttatgct tactgcattc cacgtcatcg acactgctga gaagctctac atggccaagt 1080 tttcaaacaa tgaaagaact ggtcggagag tcgaaattga cttccaaaat tggaagcttg 1140 acttcgcctc tagagatgca agaattgacg ttgcttcagt atttgtacca cagaaggttt 1200 ggagttccct gggcgttaaa agcgcgaagg tgaaaattcc cacggccgaa aggaaacctg 1260 tacaagtatt cggagctgac tcttcatcag cattcaagag ctcagtgggc ttagggacat 1320 ttgtctctga gttcaccggt gaacactcag ctacaaccac taaaggttgg agtggttcac 1380 cagttatcag caatggttgc gtgattggag tccatcgtgg agttgacttg gacaaggtca 1440 attccaacaa gttcactata atccatcaga gcttcttccc accagggttg gagacgatgt 1500 atgattatgg tcatattcga gaacttgatg aggagcaatt cgaaactcgg gaaaatgagt 1560 ttgcggaagc ttatctcaat ggacgaggta aaatcttctt tagcgagaat gagttttacc 1620 tggatagcag taagcgaccc cagtatgtac ctaaaggtcg agattggaga gaagctgagc 1680 tcgaggagga tgatgacttc tttgaggata aggcatttct tcaatcagtg aagagagatt 1740 ttggagctga atccggcgga ggaccacctg acaaagtgga tgatctgccc tttggatttt 1800 cagtggcgag aactcgccga gacgccgaag gctattcttt aaacggagaa cgggcgggga 1860 aagtccaatc ctctccgccc tgtactccct cggtggctac tccttcacag gtggacgacc 1920 aatcggaaca actgggatgc ccctcgttga cgttggaaaa tcgggtgtca aatttagaga 1980 agcttctcga accgctctta gtgagcgtgc aatctctgca agaaatagct tccctgaact 2040 cgaagatttt gactggcctg aacgcggaag cgctgcggaa ctcgattccc tcttgttcca 2100 agccacccgc ttcaaagcca cccccgagcc cgacaacatc agggaagcag tcgagcaact 2160 tgtcaaagag taccccagag caccccaaag aaactgcttc aaaggagact gggactcagc 2220 agccgtcaaa gccaaaatcg aaaagatcgc gaagacggaa gtcaaaaggg actcctcccc 2280 aggggtcccc tttgcctgct taggaatcac taatggttcc gtcatcgaca accacatgca 2340 actcgtggtt gaatcggtgt atgctcgact ggagttgcta tccaaagtgg aactaagtga 2400 tgagctcaca gctgttgact tggtgcgact gggtctttgt gacccggtca gacttttcgt 2460 gaaacaagag ccgcacccta aacggaagat tgagacgagg aggtttagat taatctcttc 2520 cgtttctctt gtagaccagc tagttgagcg tcttctcttt ggataccaaa accaactgga 2580 gattgccatg tggaaaactt gtccatcaaa accaggaatg gggttaagtg aaggctctca 2640 agcggatgcc atctgggaac aggtggcata taaacacacc acttgcccgg ctgttgaagc 2700 cgacatttct ggctttgatt ggtctgtcca agagtgggaa cttcgtgcag atgtggaaat 2760 gaggattttc ttaggcggct ttcacgagaa ggtcgctaga gctgcgagga atcgatttaa 2820 atgtctttct cttagcgtgt ttcaattgtc caacgggacg ttgatcgccc aggcaatccc 2880 tgggttaatg aaatccggat cctactgcac ctcgagttct aactcacgga ttcgatgtct 2940 aatggcaaag ctaatcggaa gcccctggtg catagccatg ggggatgact cagttgaagg 3000 atatgttcct ggagctcaag aggcatacag gaaacttggt catgattgta aagactacca 3060 gctctgcgag gcttcttatc agaagaccgg aactaaattg atcagtttca atttctgtag 3120 tcattacttg agtaagagaa agttttatct gacctcatgg ccaaagacct tcctgagata 3180 tcttgactcg gagaaccctc agtaccttaa tctgtttgcc gagcttcaat caagcccgat 3240 ttggcctaaa atccagaggt acattcgtcg gaagaactta gcttctgaca aaattttcat 3300 agaggaagat gacgaagaag aagcagacga adtccaacaa tggaaacggg cagcgacggc 3360 gacgtcgcac ccggcccatt ccgctgccca gtggagcgga attgggatcc gttgttagag 3420 ccccttccgc tatgagccac aatgtgagga agaggaacca aataataaga caatccaccc 3480 ttggtgaaat gtgcattggt accgaaagca cccctctcct cgcaacacac gcaacggcga 3540 atacagaggt tataggcttt gtgaatattg acgtacgaaa ctctactcaa ctgaatcggc 3600 tgtcgatcat tggatccgcc ttttcaaagt ttcgagtatt gaagatgact gcagtctatt 3660 cacctgaaat cgcaaccaat atatccggag ctatagcaat ggctctgata tacgattcgg 3720 ctgacgtcgt agctgcgaat tggaatatcc aaaggatatt ggctacagac aaagcagtca 3780 agtcaaatct ctggactatg tcgccgccca ttaggtatga taataggcta gcagctaaac 3840 cgtggtatat atccggtaca actgccggag tgggagctca aaatgagcag acccccgtca 3900 cgatagtcta cggttactat agcaattcta ctaacatacc tactggaaga attgatgttc 3960 actacgaagt tgaacttgtt caaccaatcg caccactagc caacacgtga actcaattaa 4020 gatggaaagt ttggcttccc ccagctcggg tagagcactc caattcccga aggaggtttc 4080 aacaagaagg agttatgcat gttcatgaga atattagtct cgtgggcatc gcatagtt 4138 //