ID JN618983; SV 1; circular; genomic DNA; STD; VRL; 2755 BP. XX AC JN618983; XX DT 24-JAN-2012 (Rel. 111, Created) DT 08-AUG-2012 (Rel. 113, Last updated, Version 2) XX DE Watermelon chlorotic stunt virus isolate Als-3 segment A, complete DE sequence. XX KW . XX OS Watermelon chlorotic stunt virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2755 RX DOI; 10.3390/v4071169. RX PUBMED; 22852046. RA Khan A.J., Akhtar S., Briddon R.W., Ammara U., Al-Matrooshi A.M., RA Mansoor S.; RT "Complete nucleotide sequence of watermelon chlorotic stunt virus RT originating from oman"; RL Viruses 4(7):1169-1181(2012). XX RN [2] RP 1-2755 RA Khan A.J., Haq Q.M.I., Shahid M., Ammara U., Al-Shihi A.A.; RT ; RL Submitted (24-AUG-2011) to the INSDC. RL Department of Crop Sciences, College of Agricultural and Marine Sciences, RL Sultan Qaboos University, P.O. Box-34, Al-Khod 123 Muscat, Sultanate of RL Oman XX DR MD5; 1f1cffe2b3a694b8039d5d8b2d580f4f. XX FH Key Location/Qualifiers FH FT source 1..2755 FT /organism="Watermelon chlorotic stunt virus" FT /segment="A" FT /host="squash" FT /isolate="Als-3" FT /mol_type="genomic DNA" FT /country="Oman" FT /collection_date="01-Apr-2011" FT /db_xref="taxon:35341" FT gene 155..514 FT /gene="AV2" FT CDS 155..514 FT /codon_start=1 FT /gene="AV2" FT /product="pre-coat protein" FT /db_xref="GOA:H2DKQ1" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:H2DKQ1" FT /protein_id="AEY63667.1" FT /translation="MWDPLLNDFPESVHGFRCMLAVKYLQAVESTYEPNTLGHELIRDL FT ILVLRARDYGEANRRYSHFHSRFEGSSKTELRQPLHEPCSCPHCPRHKQATTMGQQAHV FT SKAQDVQDVSKPRCP" FT gene complement(219..986) FT /gene="AC5" FT CDS complement(219..986) FT /codon_start=1 FT /gene="AC5" FT /product="AC5 protein" FT /db_xref="InterPro:IPR006892" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:H2DKQ9" FT /protein_id="AEY63668.1" FT /translation="MILILRRLLVVVDHMIVHTIEAFYQHLLLHPRGATDHGGMKLSHN FT LETIAKIVLNCRSAGLVVEHIKNLSEVHWTGPIWTTVTNKKEHDLIRMILFFYVLIHPD FT LAKNVYRLHTKPFSDTMSDSTPPSNITDTPDDTGVLNVVSLFVRLNFAWAFTALRDIWA FT SIHPVHPGLSIHGPVGPLSSLACDEDSGGKSTAHVGAVEVQFSTNLRNGSGNENISCSL FT RHNHGPGGQESDRGSIRGPKYWARRSIQRPAST" FT gene 315..1094 FT /gene="AV1" FT CDS 315..1091 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /note="Encapsidation" FT /db_xref="GOA:H2DKR0" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:H2DKR0" FT /protein_id="AEY63669.1" FT /translation="MAKRTGDILISTPVSKVRRKLNFDSPYMSRALAPTVLVTSKRRQW FT ANRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGIVRCVSDVTRGSGITH FT RVGKRFCVKSIYILGKIWMDENIKKQNHTNQVMFFLVRDRRPYGSSPMDFGQVFNMFDN FT EPSTATVKNDLRDRFQVMRKFHATVVGGPSGMKEQVLVKRFYRVYNHVVYNHQESAKYE FT NHTENALLLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1088..1492) FT /gene="AC3" FT CDS complement(1088..1492) FT /codon_start=1 FT /gene="AC3" FT /product="AC3 protein" FT /db_xref="GOA:H2DKR8" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H2DKR8" FT /protein_id="AEY63670.1" FT /translation="MDSRTGEYITADQAWNGVFTWTINNPLYFTITDHHQRPFLCQHDI FT INMQIRFNHNLRRALGIHKAFLNFRIWTTLRPQTGRFLRVFRTQVLKYLDMLGVISLNL FT VVRAVSHVLENVLVGTIDVQENHVIKFDVY" FT gene complement(1233..1643) FT /gene="AC2" FT CDS complement(1233..1643) FT /codon_start=1 FT /gene="AC2" FT /product="AC2 protein" FT /db_xref="GOA:H2DKQ5" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H2DKQ5" FT /protein_id="AEY63671.1" FT /translation="MPMNSSSSQNLSSQPSIKIKHRLAKKKTIRRRRVDLKCGCSYYLH FT ISCQNHGFSHRGIHYCGSSMEWRVYLDDKQPPIFHDNRPPPTPLSLPARHNKHANTIQP FT QPSEGVGDSQSFPELPNLDDFTASDWSFLKGI" FT gene complement(1540..2628) FT /gene="AC1" FT CDS complement(1540..2628) FT /codon_start=1 FT /gene="AC1" FT /product="Rep" FT /note="Replication associated protein" FT /db_xref="GOA:H2DKR3" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H2DKR3" FT /protein_id="AEY63672.1" FT /translation="MRPPRFRIQAKNIFLTYPRCSLSKEELLSFLVGLSLPSNLKYVKV FT CRELHQNGEPHLHVLLQFDGKITITDNRLFDHVHPSRSACFHPNIQSAKSSTDVKSYLD FT KDGDTVEWGKFQIDGRSARGGQQTANDAYATALNMSNKGEAMSVIKELAPKDFVLHYHN FT IKSNLDRIFEQPVAPFVCPFPISSFTLLPPELVEWASTNVCSSAARPWRPKSIVVEGES FT RTGKTMWARSLGPHNYLCGHLDLSPKIYSNDAWYNVIDDVDPHYLKQFKEFMGAQRDWQ FT SNTKYGKPIQIKGGIPTIFLCNPGPSSSYKEFLEEEKNYALKERADKNADEFVFLSEPL FT FSAEHQDQTQTRQKEDDSATTS" FT gene complement(2331..2474) FT /gene="AC4" FT CDS complement(2331..2474) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="UniProtKB/TrEMBL:H2DL35" FT /protein_id="AEY63673.1" FT /translation="MGNLISMCSCSSTERSPSQTIASSIMYTQAVAPVSTPTYKALSPV FT QT" XX SQ Sequence 2755 BP; 698 A; 621 C; 689 G; 747 T; 0 other; accggatgcc cgcggagaaa aaaggggacc ccacaggaca cgtgcaccaa tgaaattgcg 60 tgctttgagg taagttagct ggaaatgggg ttttgaaagc gacaagtctt acgagtcgta 120 tttatagtgc tgctgcggat caacttttgt caggatgtgg gatccattgc ttaatgactt 180 tcccgagtcg gttcacggtt ttcggtgtat gctagctgtc aagtacttgc aggccgttga 240 atcgacctac gagcccaata ctttgggcca cgaattgatc cgcgatctga ttcttgtcct 300 ccgggcccgt gattatggcg aagcgaacag gagatattct catttccact cccgtttcga 360 aggttcgtcg aaaactgaac ttcgacagcc cctacatgag ccgtgctctt gcccccactg 420 tcctcgtcac aagcaagcga cgacaatggg ccaacaggcc catgtatcga aagcccagga 480 tgtacaggat gtatcgaagc ccagatgtcc ctaagggctg tgaaggccca tgcaaagttc 540 agtcgtacga acaacgagac gacgttaagc acaccggtat cgtccggtgt gtcagtgatg 600 ttactagggg gagtggaatc actcatcgtg tcggaaaaag gttttgtgtg aagtctatat 660 acattcttgg caagatctgg atggatgaga acataaaaaa acaaaatcat acgaatcagg 720 tcatgttctt tcttgttcgt gaccgtcgtc catatgggtc cagtccaatg gacttcggac 780 aggtttttaa tatgttcgac aacgagccca gcactgcgac agttaagaac gatcttcgcg 840 atcgtttcca agttatgcga aagtttcatg ccaccgtggt cggtggcccc tctgggatga 900 aggagcaggt gctggtaaaa cgcttctatc gtgtgtacaa tcatgtggtc tacaaccacc 960 aagagtctgc gaagtatgag aatcatactg agaatgcgtt gttattgtat atggcgtgta 1020 cacacgcatc gaatcctgtg tatgcaacat tgaaaattcg gatatatttt tatgactcag 1080 ttacgaatta ataaacatcg aattttatta cgtgattttc ttgtacatcg attgtcccaa 1140 caaggacatt ttccaataca tgacttacgg ccctaacaac caaatttaga ctaattacac 1200 ctaacatatc gaggtatttt agaacctgcg ttctaaatac ccttaagaaa cgaccagtct 1260 gaggccgtaa agtcgtccag attcggaagt tcaggaaagc tttgtgaatc cccaacgccc 1320 tccgaaggtt gtggttgaat cgtatttgca tgtttattat gtcgtgctgg caaagaaagg 1380 ggcgttggtg gtggtctgtt atcgtgaaat atagggggtt gtttatcgtc caggtaaaca 1440 cgccattcca tgcttgatcc gcagtaatgt attccccggt gcgagaatcc atgattctgg 1500 cacgagatat gcaggtaata tgagcaaccg cactttagat caactcgtcg tcgccgaatc 1560 gtcttctttt tggcgagtct gtgtttgatc ttgatgctcg gctgagaaga gaggttctga 1620 gaggaagacg aattcatcgg cattcttatc cgcccgctct tttagtgcat agttcttctc 1680 ctcctctaga aactctttat acgaagaaga tgggcccgga ttgcaaagga agatagtggg 1740 tattccgcct ttaatttgaa tcggctttcc gtatttcgtg ttgctttgcc aatcacgctg 1800 ggcccccatg aactctttaa actgctttag ataatgcggg tcgacgtcat caatgacgtt 1860 gtaccacgca tcgttgctgt agatctttgg actcaggtca aggtgaccac ataggtaatt 1920 atgtggtcct aatgatcggg cccacatcgt ctttcccgta cgactctcac cctctaccac 1980 gatactcttc ggtctccacg gccgcgcagc ggaagagcaa acgttcgttg atgcccactc 2040 aacgagttca ggcggtagca acgtgaaaga cgatatcgga aaaggacaaa caaaaggagc 2100 cacaggttgt tcaaagattc gatccaaatt tgacttgata ttgtggtagt gaaggacgaa 2160 gtccttcggt gcgagctcct tgatcacaga catagcctcc cctttattac tcatgttaag 2220 cgccgtggcg taggcgtcgt tagctgtctg ttgtccaccc cttgcagatc gaccgtcgat 2280 ttgaaacttg ccccactcga cggtgtcgcc gtccttgtcc aggtaagact tcacgtctgt 2340 actggactta gcgctttgta tgttggggtg gaaacaggcg ctacggcttg ggtgtacatg 2400 atcgaagagg cgattgtctg tgatggtgat ctttccgtcg aactgcagga gcacatggag 2460 atgaggttcc ccattctggt gcagttctct gcacaccttg acgtatttta ggttcgacgg 2520 aagggagagg ccgactagaa aggaaagtag ctcttctttg gagagagagc acctgggata 2580 tgtgaggaaa atgtttttcg cttgtattct aaaacgggga ggcctcatgt tgaccagtca 2640 attggagaca ccccccagat cactaacccc tgtatattgg agactggaga caatatatag 2700 aagtagtaag aggtactact aggattttga cacgtagcgg gcatcctata atatt 2755 //