ID JN618980; SV 1; circular; genomic DNA; STD; VRL; 2744 BP. XX AC JN618980; XX DT 24-JAN-2012 (Rel. 111, Created) DT 08-AUG-2012 (Rel. 113, Last updated, Version 3) XX DE Watermelon chlorotic stunt virus isolate Als-1 segment B, complete DE sequence. XX KW . XX OS Watermelon chlorotic stunt virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2744 RX DOI; 10.3390/v4071169. RX PUBMED; 22852046. RA Khan A.J., Akhtar S., Briddon R.W., Ammara U., Al-Matrooshi A.M., RA Mansoor S.; RT "Complete nucleotide sequence of watermelon chlorotic stunt virus RT originating from oman"; RL Viruses 4(7):1169-1181(2012). XX RN [2] RP 1-2744 RA Khan A.J., Haq Q.M.I., Shahid M., Ammara U.; RT ; RL Submitted (24-AUG-2011) to the INSDC. RL Department of Crop Sciences, College of Agricultural and Marine Sciences, RL Sultan Qaboos University, P.O. Box-34, Al-Khod 123 Muscat, Sultanate of RL Oman XX DR MD5; 6eab5555c9cde4b2dd46e8ad85bdd8c0. XX FH Key Location/Qualifiers FH FT source 1..2744 FT /organism="Watermelon chlorotic stunt virus" FT /segment="B" FT /host="squash" FT /isolate="Als-1" FT /mol_type="genomic DNA" FT /country="Oman" FT /collection_date="01-Apr-2011" FT /db_xref="taxon:35341" FT gene 516..1271 FT /gene="BV1" FT CDS 516..1271 FT /codon_start=1 FT /gene="BV1" FT /product="nuclear shuttle protein" FT /db_xref="GOA:H2DKP2" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR001530" FT /db_xref="UniProtKB/TrEMBL:H2DKP2" FT /protein_id="AEY63651.1" FT /translation="MRRYDGTPQVTRGRKRKQFCRPFKSGLFRRRQASRRLFSEKLHEK FT LSRRCLEDVHSGPSYALMNQFDVTSYVTYPILGLQGNGGRSRDFIKLMNVRVSGTINVT FT PLPAEPMSDRSPMNGIFVILLIVDRKPFVPEGVNVLPSFKELFGEYECVYGIPRVKENQ FT RHRYRILGMWKQYVSGDDSAVQKDFTLRRNISGPRYNVWAAFKDIDQMSTGGNYKNVSK FT NAILACNVWVSTVRSKCEVYSQFVLDYVG" FT gene complement(1308..2231) FT /gene="BC1" FT CDS complement(1311..2231) FT /codon_start=1 FT /gene="BC1" FT /product="cell to cell movement protein" FT /db_xref="GOA:H2DKP3" FT /db_xref="InterPro:IPR000211" FT /db_xref="UniProtKB/TrEMBL:H2DKP3" FT /protein_id="AEY63652.1" FT /translation="MEGAYTVTNKYINTKRTEYTLTTDATPITLQFPSSIEQTRVRLLG FT RCMKIDHIIIEYRNQVPFNATGSVIIEIRDNRISDEEAAQAAFTFPIACNVDLHYFSSS FT FFSVAEQCPWEIVYRVEGSNVLEGVRFASFKAKLRLSSARHSTDIMFKPPTIKILTKDY FT KEDCIDFWSVERGETRRRLLNPTPSAQSNRALSKRPITILPGETWATKSHVGLPSASDS FT QSRNTYRSQSMRLDHTRSFTGTSYESDETPYAGLQRLQTATLDPGDSVSQTTSGNFSRQ FT DLESILENTINKCLIKNKSDNNQML" XX SQ Sequence 2744 BP; 703 A; 585 C; 693 G; 763 T; 0 other; accagatggc cgccgggatc cgttttgtcg ggggtacatt tgtgcggacc ccaccgagtc 60 tccaaatggc attttggtaa tttccgtgaa attaaaaaga gggaccaccg cactatcact 120 ctcttggcca atcaaagtgc ggcctcattc ttaaggggat aaatttgggc ctgggcccaa 180 tttatcgatg tgacgggacg atatcagctt tatttgattg gcccacaacg actgctttgt 240 ctgacaggac cacatgggac actgacaggt ctgttcttta atcttaagaa aattcaggga 300 attttcccgc gtaatacgtc tcgaggagca aacagtcgtt ggatggacgc cacctgtccc 360 tggttcggtc gtttgatttt cgtttttcgg ttaatttgtg gtctctgtac atatgggcct 420 ggtatttatg acagtttggc gtccatactg aggtgttcaa ctgggactgt attcgtatta 480 agaggatata cgtatcctcc caagctatac cagtgatgcg tcgctatgat ggaacacctc 540 aggttacgcg tggacgaaag cggaagcagt tctgtcgccc gttcaagtct ggtctgttta 600 gacgccgtca ggcgtcgagg cgtctttttt cggaaaagct acacgagaaa ctctcacgcc 660 gttgcctgga ggatgttcac agtgggccgt cttatgcact tatgaatcag ttcgacgtga 720 cttcgtatgt gacgtaccct attcttggcc tacagggtaa cgggggacgt agcagggact 780 ttattaagct gatgaacgtg cgcgtttctg gcacgatcaa cgtgacccct ttgcctgcag 840 agcccatgtc cgatcgttct cctatgaacg gtatatttgt tatacttttg atcgtggaca 900 ggaaaccatt cgtacccgaa ggtgtgaacg tattgcccag tttcaaggaa ctgttcgggg 960 agtatgaatg cgtctacggc attccacgag tgaaggaaaa tcagcgtcat aggtatagga 1020 ttctgggcat gtggaagcaa tacgttagcg gtgacgatag tgcggtgcag aaggacttta 1080 ctttgcgaag gaacattagt ggtcccagat acaacgtatg ggcagcattc aaagacattg 1140 atcaaatgtc cacaggagga aattacaaga acgtgagcaa gaatgccatt cttgcctgta 1200 atgtatgggt ctctacagtt cgttcgaaat gtgaagtgta ttcgcaattt gtactggatt 1260 atgtgggctg aaataaaatt caattttatt tatgcgttca atcattgtta ttacagcatt 1320 tgattattgt cggatttgtt cttaattagg cacttattaa tcgtattttc taaaatagat 1380 tctagatcct gcctcgagaa atttcctgat gttgtctggg agactgagtc tcccgggtct 1440 agcgtggctg tttgtagtct ttgcagccct gcatatggcg tctcgtcgga ctcatatgat 1500 gtccccgtga aactgcgtgt gtggtccagt ctcatcgatt gggatctgta cgtgttgcga 1560 ctttgagagt ccgacgcaga aggcaaccca acatgcgact ttgtggccca agtctctcca 1620 ggtaaaatcg taattggcct ctttgacagg gcccgattcg attgggccga cggggttggg 1680 ttgagcagtc ttcgtcgtgt ttcgcctcgt tcaacggacc agaagtctat gcagtcctcc 1740 ttgtaatcct ttgtcaggat cttgatcgtt ggaggcttga acatgatgtc cgttgaatgt 1800 cttgcagaac tcagtcgcaa cttggctttg aaagaagcaa accggacccc ttccaagacg 1860 ttcgagccct cgaccctgta cacgatctcc cagggacact gctcggcgac tgagaaaaac 1920 gacgaagaga agtagtgaag atcgacgttg caagctatcg ggaaggtgaa tgcagcctgt 1980 gctgcttcct cgtcggagat acggttatcc cgtatctcaa taatcactga tcccgttgcg 2040 ttaaacggga cctggtttct gtactcaatg ataatgtggt cgatcttcat gcatcttccc 2100 aacagacgca cccttgtctg ctcgatcgaa ctgggaaact gaagggttat aggagtggcg 2160 tctgtagtga gcgtatattc cgtcctcttg gtatttatgt acttgttagt gacggtatac 2220 gctccttcca ttccgttctc cacaggacct ttcgacgatg ttcaaatcgg aggtgcagat 2280 agctctgtac acaataaatt aacaataaca caggcaaagc aacaagagaa cggagattat 2340 tctattatat aaaataaggc cccgcagggg aaatactcaa aacacatcga gaaaggaaat 2400 aatgggcata ctatgcccta caggataatt aagcgaaatt aatggagctg gtaatcgtaa 2460 tgggtgtttt ggagtatttc ataataccta atttgctcgg gcgtattagg aactggtgtt 2520 cgtcggggag agaaatcgac aggaattcct aaatagaaaa aaccctaatg accgagcaaa 2580 tagaatgggg agataaaata aggagagaga agcactttca tgtacggaac tggagacacc 2640 tcccagtcct tctatccctg tgaattggag actggagaca atatatagaa gtagtatgat 2700 atactactag gatttgaaca cgtaggcggc catcctataa tatt 2744 //