ID JN606110; SV 1; circular; genomic DNA; STD; VRL; 7203 BP. XX AC JN606110; XX DT 02-JUL-2012 (Rel. 113, Created) DT 17-FEB-2017 (Rel. 131, Last updated, Version 2) XX DE Cacao swollen shoot CD virus isolate CI152-09, complete genome. XX KW . XX OS Cacao swollen shoot CD virus OC Viruses; Ortervirales; Caulimoviridae; Badnavirus. XX RN [1] RC Publication Status: Available-Online prior to print RP 1-7203 RX DOI; .1094/PDIS-09-11-0749-RE. RX PUBMED; 30727317. RA Kouakou K., Kebe B.I., Kouassi N., Ake S., Cilas C., Muller E.; RT "Geographical Distribution of Cacao swollen shoot virus Molecular RT Variability in Cote d'Ivoire"; RL Plant Dis. 96(10):1445-1450(2012). XX RN [2] RP 1-7203 RA Muller E., Kouakou K.; RT ; RL Submitted (23-AUG-2011) to the INSDC. RL UMR BGPI, CIRAD, Campus International de Baillarguet, Montpellier 34398, RL France XX DR MD5; 29fb63c52c8317e2432cb2a67f0bbc5d. DR EuropePMC; PMC5649073; 29052506. XX FH Key Location/Qualifiers FH FT source 1..7203 FT /organism="Cacao swollen shoot CD virus" FT /host="cocoa" FT /isolate="CI152-09" FT /mol_type="genomic DNA" FT /country="Cote d'Ivoire" FT /isolation_source="tree" FT /collected_by="Koffie Kouakou" FT /collection_date="Jan-2009" FT /note="group: variability group D" FT /db_xref="taxon:1960255" FT CDS 318..749 FT /codon_start=1 FT /product="hypothetical protein" FT /note="ORF1" FT /db_xref="InterPro:IPR010746" FT /db_xref="UniProtKB/TrEMBL:I6U4W8" FT /protein_id="AFM82588.1" FT /translation="MSSRWENSIQEWYEKSHTANLEYLDLASVSKVTNNQIAHNLAVTF FT DRLNLGNRVFIKNLKQIQESLVEVNTRIDTLEVGLRRLTKQLKENKPLTEPEVRRLVGE FT IAQQPKIVEEQALKISQELEQKLAEVEKLLRNLGLVIGQ" FT CDS 746..1165 FT /codon_start=1 FT /product="hypothetical protein" FT /note="ORF2" FT /db_xref="UniProtKB/TrEMBL:I6U100" FT /protein_id="AFM82590.1" FT /translation="MTDSPSYQQALKEAEKVDPPALGLTTTEGVTALNGLRTVIKQNNL FT QICLLADIADKLADLLTEQKKSRKEKAKEVAIPEDLISKLQGLSIQERGDEKVTRRKET FT KGNLYGFKDPYKILAAEVAKITPKPPTTEKEDESN" FT CDS 1152..6770 FT /codon_start=1 FT /product="polyprotein" FT /note="contains putative movement protein, capsid protein FT and RT and RNaseH replication enzymes; ORF3" FT /db_xref="GOA:I6TT28" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR018061" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:I6TT28" FT /protein_id="AFM82591.1" FT /translation="MSQTRTHQMPSVTTTVNEQGEGPLFEDQVRNYRRNQRRLFNLRKK FT ARRAQKALTGSRSRHQETLEQEIDPQVTLRLSMQERARLVPAEVLYRSRRDTVHHRVYT FT HRSEESILCVGGNQVDRTFIQPSSLERLQRTGMSFIHIGILQVRIQILHRQEEGTMALV FT VFRDNRWAGDQAIFAQMEVDLTKGSQLVFVVPDTMMTIGDFARNVQLSILTRGYDNWQN FT GEANLLVTRSMTGRLSNTPNVAFACQIASATDYLASHGVKAIAGKKVNLQQLRNQQWVL FT RPPQADVLPMQPRSVETRNLIDGSISIRFHDYEVAPSTSGPHYNENDEEVESESEAEIR FT EHTVAVWIIGEEEYPDDNGRIKVWEESSNGNGRFFRYYTPPSVSNEPIIATGWDDDEDD FT DYDYDPRWDTNLESEGEEPDEPLRSEEDEEEEVQDEPVWHQEEEEEEEEEEEEEEEEED FT EYDPNTYMAYLQKEEDDWTEIIASLNPEMEYPQRRTEVAETVFSEIVDYTPPGDTLMTP FT VGYPPASSSRSTVTTPSRPPLYEGRIPSASRVLRRDDYTEWWQLPSSQGTTGALFVMPK FT QIGLFHDVFSRWESITKNYVSAQGITDPTEKMEFIENLLGETEKLTWIQWRMRYEAEYQ FT QLLTLAEGRQGTQNILSQIKRVFSLEDPASGSTRIQDSAYRDLERLTCHNIKDIVQFLN FT DYGRLAAKSGRLFIGTELSEKLWMKMPPELGHRMREAFQKEYEGNEVGVFPRILFAYRY FT LEQECKDAAFKRSLKSLSFCKDMPLTGYYDKSSRYGMRRSKTYKGKPHASHARIEKRKH FT LVRNKRCKCYLRGDEGHFARECPNNKRDVKRVAIFEGINLPDDYEIVSVEEGEEDSDAI FT YSLSENEEELQDEVLHEKVFMIREGDQSYWMGKANHWTAMVRVSYQQYHCPHQWEHNKE FT IPIMALINCHFCKQPTNLRGRVHCPTCQLTSCYMCAPIYCDVQVQQQPKTPIPFSPNAL FT LQQQAAYIRWLESENKRLNELVEFYKRLLDGGSRLQQELEADQKELEELEADRKELEAH FT DKGKRVQFTEEEKVQLTEELEEIHMAYLEEDTITRVVGHTTEGPSEAKKVVKKSNMLYN FT LEVILIIPEVGKPLKVKAILDTGATTCCININSVPKMAIEQNTFLVQFRGINSTQSVDK FT KLRYGRMTISGHQFRFPYCYAFPLSLGDGIEMILGCNFIRGMYGGLRIEGSTITFYKNV FT TTIQTKLAAGMVGGTTSFYPGEGGGSHFEFKASEESDDDAEIDFEIHQQIISHAVAQAT FT TPKLSPKLKHLMGQLKDQGFIGENPMKHWASNKIHCKLDIKNPDLIIEDKPIKHLTPAM FT EKQFAKHIKALLDIGVIRPSKSRHRTTAFIVESGTTIDPKTKKTIHGKERMVFNYKRLN FT DNTEKDQYSLPGIHTILKRVGNKKIFSKFDLKSGFHQVAMAEESIPWTAFWVPQGLYEW FT LAMPFGLKNAPAIFQRKMDVCFKGTEDFIAVYIDDILVFSETMEEHENHISRMLEICKR FT HGLVLSPNKMSIAQEEIEFLGTIISKGRMKLQAHVIKKIVSKAQMELSTTKGLRSFLGL FT LNYARIYIPNLGRKLSPLYAKVSPTGEKKLNKQDWNLINEIKQMVQKLPDLDIPPIESC FT IVIESDGCMEGWGGICKWKKAKEDSRTTGRICAYASGKFGVIKSTIDAEIYALIKALDA FT FKIFYLDKGHLIVRTDCQAIVTFYNKTNTHKPSRIRWITFLDYITGLGVSVTIEHIDGK FT DNHLADTLSRLVWSQFPIEPPEEEPLKSQQLNYWEQVTHTAWPMMASCSNEGIPLHMAP FT SPWQLNMPSPDSSIRSRKKLPRKRSTHYETYKGSYITSATTCQALQQGTTGRLTDSH" FT CDS 6455..6847 FT /codon_start=1 FT /product="hypothetical protein" FT /note="ORFY" FT /db_xref="UniProtKB/TrEMBL:I6SYM4" FT /protein_id="AFM82589.1" FT /translation="MEPVPDRTTGRRAAEIPATQLLGASYPYSLAYDGLLQQRRDTITH FT GTLTMATEHAISRQLYQIKEEAAKKALNALRDLQGILHHERNHLSSSATRDNWASDRLP FT LTRQLSNELDQHVTAINGIIESMVQP" XX SQ Sequence 7203 BP; 2469 A; 1486 C; 1663 G; 1585 T; 0 other; tggtatcaga gcaaggtttg aaaatggtca tgtccggcta aaaccctaag gttaggaaaa 60 gggaaagagt gaggctgtcg ttagagttta aacaccggtc ctaagatact gttccgacct 120 ccactagaga gagaccaaac ccgttggaag tttgctgttt taaaagaaaa aggcgtaacc 180 ctaaagagta cctagagaga gggaagaaag gggagaagat gatcttttga aaacagaaaa 240 tcaagactat tcccgttatg ctctacagtt gcagcgaaag ctgatcttct gtatcagaaa 300 ggaagaaaac ttggttaatg tctagccgtt gggagaatag tatccaagaa tggtatgaaa 360 agtctcacac agccaatctc gagtacctag acctagcctc tgttagtaaa gtgaccaaca 420 accagattgc tcataacctt gcagtaacct ttgataggtt aaatttagga aaccgtgttt 480 tcatcaaaaa cctaaaacaa attcaagagt ctttagttga agtaaacact aggatcgaca 540 ccctagaagt aggcttaaga aggctaacca aacagcttaa agaaaacaaa cctttaaccg 600 agcctgaagt ccgtcggtta gtaggagaga ttgcacagca acccaagatc gttgaggaac 660 aagctcttaa gatctctcag gagcttgaac agaagcttgc agaagttgaa aaacttcttc 720 gcaatcttgg ccttgtaatt ggtcaatgac tgatagcccc agctatcaac aagctctgaa 780 ggaagctgag aaggttgacc caccagcact tgggttaaca actactgaag gagtaaccgc 840 actcaacggg ttgaggacgg ttataaagca aaataatttg cagatctgct tactggcaga 900 tatagcagac aagcttgctg atcttctgac tgagcagaag aaatcaagga aggaaaaggc 960 gaaggaagtc gctattccag aagatctcat atccaaactc caaggattat ccatccagga 1020 gagaggagac gagaaagtaa caagaagaaa ggagactaaa ggaaacctct acggtttcaa 1080 agatccttac aagatcttag cagcagaagt tgcaaagatc actccaaagc ctcctacaac 1140 agagaaagag gatgagtcaa actagaactc atcagatgcc tagtgtcacc actacggtga 1200 atgaacaagg agaaggtcct ctctttgagg atcaagtcag aaattaccgg agaaaccaaa 1260 gacgtctatt caacttaagg aaaaaggcca gaagagcaca aaaggcttta acagggtcca 1320 gatctagaca ccaagagacc cttgaacaag aaatagaccc tcaggttacc ctgagactgt 1380 ccatgcagga aagggcacga ctagtaccag ctgaggtact gtacagatca aggagagaca 1440 cagtgcacca ccgtgtctat acgcatagat cagaggaatc tatcctatgc gtcggaggaa 1500 atcaagtcga caggacgttt atacaaccat ccagtctaga gagactacaa agaacgggaa 1560 tgtcctttat acatattggc atcctgcaag ttaggatcca gatcctgcat cgacaagaag 1620 aaggaacaat ggccttagtg gttttccgtg acaacagatg ggctggagat caagccatct 1680 ttgcacaaat ggaagttgac ctgaccaaag gcagccaatt ggtgttcgtg gtacctgata 1740 ccatgatgac cattggagat tttgctagaa acgtgcaact atctatccta acaaggggat 1800 atgataactg gcagaatgga gaggccaatc tactagtaac cagaagcatg acagggagac 1860 tgtcaaatac accaaacgta gccttcgcat gccagatagc aagtgctaca gactacctgg 1920 ccagtcacgg tgtgaaagca atagcaggga agaaagtaaa tctgcaacaa ctaagaaacc 1980 aacagtgggt tctacgaccc ccacaagcag atgtactacc aatgcaacca aggtcagtcg 2040 agacaagaaa cctgattgat ggaagcatat ccatcagatt ccacgattat gaggtagctc 2100 cttcaacatc aggacctcat tacaatgaaa atgacgagga agtggaatca gaatcagagg 2160 cagagatcag agagcataca gttgcagtct ggataattgg agaagaagaa tatccagatg 2220 ataatggaag aattaaagtc tgggaagaat ccagtaatgg caacggaaga ttcttcagat 2280 attacacacc tccatcagta tccaatgaac ctattatcgc cacaggctgg gacgatgatg 2340 aggatgatga ttatgattat gacccaaggt gggatactaa tctagaaagt gaaggtgaag 2400 aaccagacga gcctctgagg agtgaagagg atgaagaaga agaagtacag gatgaacctg 2460 tatggcacca agaagaagaa gaagaagaag aagaagaaga agaagaagaa gaagaagaag 2520 aagacgagta tgaccctaat acatacatgg catacttgca gaaggaagaa gatgactgga 2580 cagaaatcat cgccagtctt aacccagaaa tggagtatcc acagagaagg acagaagtag 2640 cggagactgt tttctcagaa atagtagatt acaccccacc aggagatacg ttgatgacac 2700 cagtaggata ccctcctgct tcatcatcaa gatcaacggt cacaactcct agtagaccac 2760 cgctatacga aggaaggata ccaagtgcat caagggtcct cagaagagat gactacacag 2820 agtggtggca actgccatca tcacaaggga ccacaggagc actgtttgtg atgccaaagc 2880 aaattgggct attccacgat gttttctcaa gatgggagtc cattacaaag aactatgttt 2940 cggcccaagg cattactgac ccaacagaga aaatggaatt cattgaaaat ctgcttggag 3000 aaacggagaa acttacctgg atccaatgga gaatgaggta tgaagctgaa tatcaacagc 3060 tgctaacttt agcagaaggg agacaaggga ctcagaatat tctgtctcag ataaagagag 3120 tcttctcact tgaagaccca gcttcaggat ccaccagaat ccaagactct gcttacagag 3180 atttggaaag attgacttgc cacaacatca aggacatagt ccagtttctg aatgactatg 3240 gaagattggc agctaaaagt ggaagactgt tcattggaac agagctgagt gaaaaacttt 3300 ggatgaagat gccaccggag ttaggtcaca gaatgaggga agcgttccag aaggaatatg 3360 aaggcaatga agtaggagta tttcctcgaa tactatttgc ctatcgttac ctggaacaag 3420 aatgcaaaga cgctgctttc aaaagaagtt tgaagtccct tagcttttgc aaagatatgc 3480 ctttaacagg ttattatgac aaaagctcca gatatgggat gcggagatcc aagacataca 3540 aaggaaaacc tcatgcgtct catgcaagaa ttgaaaagag aaagcatcta gtaagaaaca 3600 agaggtgcaa gtgctacctc cgtggagatg aaggccattt cgcaagggaa tgtcccaata 3660 ataaaaggga tgttaaaaga gtggcaatat ttgaaggcat caacctccca gatgactatg 3720 agatagtttc agtggaagag ggagaggaag actcagacgc tatctatagc ttgtctgaaa 3780 atgaagaaga acttcaggat gaagtacttc atgaaaaagt cttcatgata cgagaaggag 3840 atcaatccta ttggatggga aaagcaaatc actggacagc tatggtcaga gtcagttatc 3900 aacagtatca ctgtccacat cagtgggagc acaacaaaga gattccaata atggccctta 3960 tcaactgcca tttttgtaag cagcccacaa atcttagagg aagagtgcac tgccccacat 4020 gccagctcac cagctgttat atgtgtgcac caatctattg tgatgtccaa gtccaacaac 4080 agccaaagac ccccatacca ttcagcccaa atgcattgct acagcagcag gccgcctata 4140 tccgttggct cgaatctgaa aataaaagac ttaatgagct cgtggaattc tacaaaaggc 4200 tcttggacgg aggatccaga ctccaacagg agttggaagc tgatcaaaaa gaattggagg 4260 agttggaagc tgatcgaaaa gaattggagg cccatgacaa aggaaaaagg gtccaattca 4320 cagaagaaga aaaggtccag ctcaccgaag aattagagga aatccatatg gcctatcttg 4380 aggaggacac aatcacacgt gtcgtgggtc atactacaga aggaccttca gaagccaaga 4440 aagtggtgaa aaagagcaat atgctatata acctcgaggt tatcctaatc atacctgagg 4500 ttggaaaacc actaaaagtc aaagcgatat tggatacagg agcaactaca tgctgtatca 4560 atatcaattc tgttccaaag atggctatcg aacagaatac attcctggtg caatttcggg 4620 gaattaattc tacacaatcc gttgataaga agctccgtta tggacgaatg actattagcg 4680 gacaccaatt cagatttccc tattgctatg cattcccact atcccttggc gatggtatcg 4740 aaatgatact aggttgcaat tttatccgcg gaatgtacgg tggacttaga atcgaaggct 4800 ctacaatcac attctacaaa aatgtcacta cgatccaaac taagttagcc gctggaatgg 4860 ttggtggaac aacctctttt tatccggggg aaggaggagg cagtcacttt gaattcaaag 4920 cctcagaaga atcggatgat gacgcggaga tagatttcga aatccaccag cagatcataa 4980 gccatgcagt agcccaagct acaacaccaa aactgagccc aaaactgaag catctgatgg 5040 gccagctgaa agatcaaggc tttattgggg aaaaccctat gaagcactgg gcttctaaca 5100 aaatccactg caagctggat atcaagaatc cagacttaat tattgaagac aagcccatta 5160 aacatctgac gcctgcgatg gagaaacagt tcgcaaagca catcaaggct ctccttgaca 5220 ttggcgtgat aaggcccagt aaatcaagac acagaacaac ggcctttatc gtggaatcag 5280 gcaccaccat tgacccaaag acgaagaaga caatccatgg gaaggagaga atggtgttca 5340 actacaaacg cctgaatgat aacacagaaa aggatcagta ctcactgcct gggattcaca 5400 ctatcctgaa gagagttggg aacaagaaga tcttcagtaa gttcgactta aagtcaggtt 5460 tccaccaagt agcaatggca gaagagtcaa ttccttggac cgccttctgg gtcccgcaag 5520 ggttatacga atggctagct atgccatttg gtctgaagaa cgcccctgca atcttccaaa 5580 gaaaaatgga tgtctgtttt aagggaacag aagacttcat tgcagtctat attgatgaca 5640 tcctcgtgtt cagtgaaaca atggaggaac acgaaaatca catcagcaga atgctcgaga 5700 tatgtaaaag acatgggcta gttcttagtc ctaataaaat gagcattgcc caagaggaga 5760 ttgagttctt agggaccata atctccaaag gaagaatgaa actccaggcc catgtgatca 5820 agaagattgt aagcaaggcc caaatggagt tatccacaac aaagggttta agatctttcc 5880 ttggcctgtt aaattatgcc aggatctaca tcccaaattt gggaaggaaa ttaagcccat 5940 tatatgcaaa ggtcagccca actggggaaa agaagcttaa caagcaagat tggaatctca 6000 tcaatgagat aaagcaaatg gtccaaaagc tacctgacct agacattcca ccaatagaaa 6060 gctgcatagt cattgaaagt gacggatgca tggaaggatg gggtggaatt tgcaaatgga 6120 aaaaggcaaa agaggattcg aggacaacag ggagaatctg cgcgtacgct agtggaaagt 6180 ttggcgtaat caaaagcact attgacgccg agatttacgc cttgattaag gcattggatg 6240 cttttaaaat cttttatctg gacaaagggc atcttatcgt acgcaccgac tgtcaggcta 6300 ttgtcacctt ttacaataag accaataccc acaaaccatc caggatacgc tggattactt 6360 ttctggacta tataactggg ttaggtgttt cagtgacgat agaacacatc gacggaaaag 6420 acaatcacct agctgacact ctaagcagac tagtatggag ccagttcccg atcgaaccac 6480 cggaagaaga gccgctgaaa tcccagcaac tcaattactg ggagcaagtt acccatacag 6540 cttggcctat gatggcctcc tgcagcaacg aagggatacc attacacatg gcaccctcac 6600 catggcaact gaacatgcca tctcccgaca gctctatcag atcaaggaag aagctgccaa 6660 gaaagcgctc aacgcactac gagacctaca agggatccta catcacgagc gcaaccacct 6720 gtcaagctct gcaacaaggg acaactgggc gtctgacaga ctcccactaa cccgccagct 6780 gtccaatgaa ctagaccagc atgtgaccgc aatcaacggc attattgaaa gtatggtcca 6840 gccttagttt tggacagtag tatgcaataa ttaaagtagt gtttgcttta tgctttgtga 6900 gctgtatcac agctgtatta ctactttatg agttgtatcg cactatggaa ggacatgagt 6960 gattgacgat ggggcccaaa gagcacccgg atcaccaaat ccttttccta taagtagcga 7020 agtgtgtaag cttagacctt agaccaaaaa aaagagtaag aactactcta gctgaatcta 7080 agtgttgtga gtgtttgtaa gttctaagtt tttaaagaga aataaatagt ccgctttgtg 7140 cttatctatt tgtttccgcc tggagattta aacagttttt gtttcttccg ccgtttttaa 7200 ttc 7203 //