ID JN604500; SV 1; circular; genomic DNA; STD; VRL; 2768 BP. XX AC JN604500; XX DT 29-JAN-2012 (Rel. 111, Created) DT 29-JAN-2012 (Rel. 111, Last updated, Version 1) XX DE Chilli leaf curl virus isolate KW1, complete genome. XX KW . XX OS Chilli leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2768 RA Khan A.J., Haq Q.M.I., Al-Matrushi A.M.O.; RT "Molecular characterization and infectivity of Chilli leaf curl virus from RT Oman"; RL Unpublished. XX RN [2] RP 1-2768 RA Khan A.J., Haq Q.M.I., Al-Matrushi A.M.O.; RT ; RL Submitted (23-AUG-2011) to the INSDC. RL Department of Crop Sciences, College of Agricultural and Marine Sciences, RL Sultan Qaboos University, P.O. Box-34, Al-Khod 123 Muscat, Sultanate of RL Oman XX DR MD5; 23a26e81afa17161a913a00c0d18a84b. XX FH Key Location/Qualifiers FH FT source 1..2768 FT /organism="Chilli leaf curl virus" FT /host="tomato" FT /isolate="KW1" FT /mol_type="genomic DNA" FT /country="Oman" FT /collection_date="01-Apr-2011" FT /db_xref="taxon:172278" FT gene 150..515 FT /gene="V2" FT CDS 150..515 FT /codon_start=1 FT /gene="V2" FT /product="pre-coat protein" FT /db_xref="GOA:H2DGX7" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:H2DGX7" FT /protein_id="AEY77481.1" FT /translation="MWDPLLNEFPESVHGFRCMLAVKYLQLVENSYSPDTLGYDLIRDL FT ISVIRARNYVEATSRYNHFHARLEGTPSSQLRQPICQPCCCPHCPRHKGKGMGQQAHES FT EAQDVQDVQKPRCSEGM" FT gene 310..1092 FT /gene="V1" FT CDS 310..1089 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /note="encapsidation" FT /db_xref="GOA:H2DH08" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:H2DH08" FT /protein_id="AEY77482.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKAKAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTLQGLP FT KRGRVRRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGAPQDFGDVFNMFD FT NEPSTATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKY FT ENHSENALMLYMACTHASNPVYATLKIRIYFYDSVSN" FT gene complement(1086..1490) FT /gene="C3" FT CDS complement(1086..1490) FT /codon_start=1 FT /gene="C3" FT /product="C3 protein" FT /db_xref="GOA:H2DGV0" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H2DGV0" FT /protein_id="AEY77483.1" FT /translation="MDSRTGEPITAAQAENGVFIWEITNPLYFKITEHHNRPFLRSQDI FT ITVQIRFNHNLRKALGMHKCFLTYRIWTTLQPQTGHFLRVFKTQVLKVLNNFAVISINN FT VNRAVDHVLWNVLDHVVYVNQSYSIKYNLY" FT gene complement(1231..1635) FT /gene="C2" FT CDS complement(1231..1635) FT /codon_start=1 FT /gene="C2" FT /product="C2 protein" FT /db_xref="GOA:H2DH10" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H2DH10" FT /protein_id="AEY77484.1" FT /translation="MRPSSPSQAHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALR FT CHGYGFTHRGTHHCSSSREWRVYLGDNKSPVFQDNRAPQQAIPEKPRHHHSADTVQSQP FT EESVGDAQMFSNLPNLDDLTASDWSFLKGI" FT gene complement(1538..2623) FT /gene="C1" FT CDS complement(1538..2623) FT /codon_start=1 FT /gene="C1" FT /product="Rep" FT /note="replication-associated protein" FT /db_xref="GOA:H2DH11" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H2DH11" FT /protein_id="AEY77485.1" FT /translation="MPRAGRFNINAKNYFLTYPNCSLTKEEALSQLQNLETPVNKLFIR FT VCRELHENGEPHLHVLVQFEGKYQCTNNRFFDLISPTRSAHFHPNIQRAKSSSDVKAYV FT EKDGDFIDSGVFQIDGRSARGGCQSANDAYAEAINSGSKAAALNILREKAPKDYVLQFH FT NLNANLDRIFTPPPDVYVSPFLSSSFDQVPGELEEWASVNVVGAAARPLRPMSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDASYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKHWALKNATFITLTGPL FT YSGSNQSAAQAGQEGDQASSR" FT gene complement(2173..2466) FT /gene="C4" FT CDS complement(2173..2466) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:H2DGV3" FT /protein_id="AEY77486.1" FT /translation="MGNLIYTCSSNSKANINAQTTDSSTSFPQPGQHISIRTFRELRAL FT QMSKPMWRKTETSLTLEFSRSMADQLEEVANLPTTHMPRQSIQGPRLRPSIF" XX SQ Sequence 2768 BP; 761 A; 560 C; 641 G; 806 T; 0 other; accggatggc cgcgattttg ttttaccgtg gaccccgcga tgcacgtgct gacaaataca 60 tgtggaccaa ttaaaaacgt ccctcaaagc ttaattgttt cgtggtcccc tctataaact 120 tgggctccaa gtagtgggtt tttatcacaa tgtgggatcc tttactaaat gagtttcccg 180 aaagtgttca tgggtttagg tgtatgttag cagtgaaata tctgcaatta gtagaaaatt 240 catattcgcc agacacatta gggtacgatt taatcaggga tttaatttca gttattaggg 300 ctagaaatta tgtcgaagcg accagcagat ataatcattt ccacgcccgc ctcgaaggta 360 cgccgtcgtc tcaacttcga cagcccatat gccagccgtg ctgctgcccc cattgtccgc 420 gtcacaaagg caaaggcatg ggccaacagg cccatgaatc ggaagcccag gatgtacagg 480 atgtacagaa gcccagatgt tccgagggga tgtgaaggcc catgtaaggt ccagtctttt 540 gagtctagac acgatgtagt tcatataggg aaggttatgt gtattagtga tgttacccgt 600 ggtaccctgc aggggttacc caaaagaggt agggtaaggc gtttctgtgt taagtctgtt 660 tatgtcttag ggaagatatg gatggatgag aatatcaaga ctaagaatca cacgaatagt 720 gtgatgttct tccttgtccg tgatcgtcga cctacaggtg caccacaaga ttttggagat 780 gtgtttaata tgttcgacaa cgaacctagc actgccactg tgaagaatat gcatagagat 840 cgttatcagg tcttgaggaa atggcacgca acggttactg gtggacagta cgcgtcgaag 900 gaacaggcat tagttaagaa gttcgttagg gttaacaatt atgttgtgta taaccagcag 960 gaagctggaa aatatgagaa tcatagtgag aatgctctga tgttgtatat ggcgtgtact 1020 cacgcctcta accctgtgta tgctacattg aagatacgta tctatttcta tgattcagta 1080 tcgaattaat aaagattata ttttattgaa tatgattggt ttacatatac aacgtgatct 1140 aatacattcc ataatacatg atcaactgct ctatttacat tgttaatact aattacagca 1200 aaattattaa gcactttcaa tacttgggtt ttaaataccc ttaagaaatg accagtctga 1260 ggctgtaagg tcgtccagat tcggtaggtt agaaaacatt tgtgcatccc caacgctttc 1320 ctcaggttgt gattgaaccg tatctgcact gtgatgatgt cttggcttct caggaatggc 1380 ctgttgtggt gctctgttat cttgaaatac aggggatttg ttatctccca gataaacacg 1440 ccattctctg cttgagctgc agtgatgggt tcccctgtgc gtgaatccat agccgtggca 1500 acgtaatgcg atgaaatatg aacagccgca atcgaggtca acgcgacgac gcctggtccc 1560 cttcttggcc agcctgtgct gcactttgat tggaacctga gtagagtggg cctgtgaggg 1620 tgatgaaggt cgcattcttt aaagcccaat gtttgagtgc ggaattcttt tcttcatcca 1680 agaactcttt atagctggaa ttgggtcctg gattgcagag gaagatagcg ggaattccac 1740 ctttaatttg aactggcttt ccgtattttg tatttgattg ccagtccctt tgggccccca 1800 tgaattcttt aaagtgtttt agataatgcg ggtcgacgtc atcaatgacg ttatacgagg 1860 catcattgct gtacacttta gggctaaggt ctaagtgacc acataggtag ttatgtggac 1920 ccaacgacct agcccacatg gtcttcccgg ttcgactatc accctcaatc acaatactca 1980 tgggcctcaa aggccgcgca gcggcaccca ccacgttcac agaagcccat tcctcaagtt 2040 caccaggaac ttgatcaaaa gaagaagaaa gaaaaggaga aacataaaca tccggtggag 2100 gcgtaaaaat cctatctaaa ttagcattta aattatgaaa ttgtaaaaca taatctttgg 2160 gagctttctc ccttaaaata ttgagggccg cagccttgga ccctgaattg attgcctcgg 2220 catatgcgtc gttggcagat tggcaacctc ctctagctga tctgccatcg atctggaaaa 2280 ctccagagtc aatgaagtct ccgtctttct ccacataggc tttgacatct gaagagctct 2340 tagctctctg aatgttcgga tggaaatgtg ctgaccgggt tggggaaatg aggtcgaaga 2400 atctgttgtt tgtgcattga tatttgcctt cgaattggac gagcacgtgt agatgaggtt 2460 ccccattctc gtgcaattct ctgcaaaccc taataaataa tttatttact ggggtttcta 2520 agttttgtaa ttgggaaagg gcctcttctt tagtaagaga gcagttagga tatgttagga 2580 aataattttt agcatttata ttgaatctcc ccgctctagg catattggtg gacactcaaa 2640 cttactatgc aatcggtgga atgggggaca atttatatgt gtccaccaat ggcaaattgg 2700 taattgttgt tacattaaaa aaatttaaaa ttcaaattcc gacaaaagcg gccatccgca 2760 ttaatatt 2768 //