ID JN604493; SV 1; circular; genomic DNA; STD; VRL; 2758 BP. XX AC JN604493; XX DT 29-JAN-2012 (Rel. 111, Created) DT 29-JAN-2012 (Rel. 111, Last updated, Version 1) XX DE Chilli leaf curl virus isolate Taq2, complete genome. XX KW . XX OS Chilli leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2758 RA Khan A.J., Al-Matrushi A.M.O., Haq Q.M.I.; RT "Molecular characterization and infectivity of Chilli leaf curl virus from RT Oman"; RL Unpublished. XX RN [2] RP 1-2758 RA Khan A.J., Al-Matrushi A.M.O., Haq Q.M.I.; RT ; RL Submitted (22-AUG-2011) to the INSDC. RL Department of Crop Sciences, College of Agricultural and Marine Sciences, RL Sultan Qaboos University, P.O. Box-34, Al-Khod 123 Muscat, Sultanate of RL Oman XX DR MD5; c5ec3e0f0fc3e94ef542a98edf921965. XX FH Key Location/Qualifiers FH FT source 1..2758 FT /organism="Chilli leaf curl virus" FT /host="tomato" FT /isolate="Taq2" FT /mol_type="genomic DNA" FT /country="Oman" FT /collection_date="01-Apr-2011" FT /db_xref="taxon:172278" FT gene 149..505 FT /gene="V2" FT misc_feature 149..505 FT /gene="V2" FT /note="similar to pre-coat protein due to mutation; FT required for virus movement; V2 protein" FT gene 309..1082 FT /gene="V1" FT CDS 309..1079 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /note="encapsidation" FT /db_xref="GOA:H2DH02" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:H2DH02" FT /protein_id="AEY77440.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKAKAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGAPQDFGDVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT SENALMLYMACTHASNPVYATLKIRIYFYDSVSN" FT gene complement(1076..1480) FT /gene="C3" FT CDS complement(1076..1480) FT /codon_start=1 FT /gene="C3" FT /product="C3 protein" FT /db_xref="GOA:H2DGV0" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H2DGV0" FT /protein_id="AEY77441.1" FT /translation="MDSRTGEPITAAQAENGVFIWEITNPLYFKITEHHNRPFLRSQDI FT ITVQIRFNHNLRKALGMHKCFLTYRIWTTLQPQTGHFLRVFKTQVLKVLNNFAVISINN FT VNRAVDHVLWNVLDHVVYVNQSYSIKYNLY" FT gene complement(1221..1625) FT /gene="C2" FT CDS complement(1221..1625) FT /codon_start=1 FT /gene="C2" FT /product="C2 protein" FT /db_xref="GOA:H2DH10" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H2DH10" FT /protein_id="AEY77442.1" FT /translation="MRPSSPSQAHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALR FT CHGYGFTHRGTHHCSSSREWRVYLGDNKSPVFQDNRAPQQAIPEKPRHHHSADTVQSQP FT EESVGDAQMFSNLPNLDDLTASDWSFLKGI" FT gene complement(1528..2613) FT /gene="C1" FT CDS complement(1528..2613) FT /codon_start=1 FT /gene="C1" FT /product="Rep" FT /note="replication-associated protein" FT /db_xref="GOA:H2DGW9" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H2DGW9" FT /protein_id="AEY77443.1" FT /translation="MPRAGRFNINAKNYFLTYPNCSLTKEEALSQLQNLETPVNKLFIR FT VCRELHENGEPHLHVLVQFEGKYQCTNNRFFDLISPTRSAHFHPNIQRAKSSSDVKAYV FT EKDGDFIDSGVFQIDGRSARGGCQSANDAYAEAINSGSKAAALNILREKAPKDYVLQFH FT NLNANLDRIFTPPPDVYVSPFLSSSFDQVPDELEEWASVNVVGAAARPFRPMSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDASYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKHWALKNATFITLTGPL FT YSGSNQSAAQAGQEGDKASSR" FT gene complement(2163..2456) FT /gene="C4" FT CDS complement(2163..2456) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:H2DGX0" FT /protein_id="AEY77444.1" FT /translation="MGNLIYTCSSNSKANINAQTTDSSTSSPQPGQHISIRTFRELRAL FT QMSKPMWRKTETSLTLEFSRSMADQLEEVANLPTTHMPRQSIQGPRLRPSIF" XX SQ Sequence 2758 BP; 757 A; 554 C; 636 G; 811 T; 0 other; accggatggc cgcgattttt tttaccgtgg accccgcgat gcacgtgctg acaaatacat 60 gtggaccaat taaaaacgtc cctcaaagct taattgtttc gtggtcccct ctataaactt 120 gggctccaag tagtgggttt ttatcacaat gtgggatcct ttactaaatg agtttcccga 180 aagtgttcat gggtttaggt gtatgttagc agtgaaatat ctgcaattag tagaaaattc 240 atattcgcca gacacattag ggtacgattt aatcagggat ttaatttcag ttattagggc 300 tagaaattat gtcgaagcga ccagcagata taatcatttc cacgcccgcc tcgaaggtac 360 gccgtcgtct caacttcgac agcccatatg ccagccgtgc tgctgccccc attgtccgcg 420 tcacaaaggc aaaggcatgg gccaacaggc ccatgaatcg gaagcccagg atgtacagga 480 tgtacagaag cccagatgtt cctaggggat gtgaaggccc atgtaaggtc cagtcttttg 540 agtctagaca cgatgtagtt catataggga aggttatgtg tattagtgat gttacccgtg 600 gtaccgggtt aacccataga gtaggtaagc gtttctgtgt taagtctgtt tatgtcttag 660 ggaagatatg gatggatgag aatatcaaga ctaagaatca cacgaatagt gtgatgttct 720 tccttgtccg tgatcgtcga cctacaggtg caccacaaga ttttggagat gtgtttaata 780 tgttcgacaa cgaacctagc actgccactg tgaagaatat gcatagagat cgttatcagg 840 tcttgaggaa atggcacgca acggttactg gtggacagta cgcgtcgaag gaacaggcat 900 tagttaagaa gttcgttagg gttaacaatt atgttgtgta taaccagcag gaagctggaa 960 aatatgagaa tcatagtgag aatgctctga tgttgtatat ggcgtgtact cacgcctcta 1020 accctgtgta tgctacattg aagatacgta tctatttcta tgattcagta tcgaattaat 1080 aaagattata ttttattgaa tatgattggt ttacatatac aacgtgatct aatacattcc 1140 ataatacatg atcaactgct ctatttacat tgttaatact aattacagca aaattattaa 1200 gcactttcaa tacttgggtt ttaaataccc ttaagaaatg accagtctga ggctgtaagg 1260 tcgtccagat tcggtaggtt agaaaacatt tgtgcatccc caacgctttc ctcaggttgt 1320 gattgaaccg tatctgcact gtgatgatgt cttggcttct caggaatggc ctgttgtggt 1380 gctctgttat cttgaaatac aggggatttg ttatctccca gataaacacg ccattctctg 1440 cttgagctgc agtgatgggt tcccctgtgc gtgaatccat agccgtggca acgtaatgcg 1500 atgaaatatg aacagccgca atcgaggtca acgcgacgac gccttgtccc cttcttggcc 1560 agcctgtgct gcactttgat tggaacctga gtagagtggg cctgtgaggg tgatgaaggt 1620 cgcattcttt aaagcccaat gtttgagtgc ggaattcttt tcttcatcca agaactcttt 1680 atagctggaa ttgggtcctg gattgcagag gaagatagcg ggaattccac ctttaatttg 1740 aactggcttt ccgtattttg tatttgattg ccagtccctt tgggccccca tgaattcttt 1800 aaagtgtttt agataatgcg ggtcgacgtc atcaatgacg ttatacgagg catcattgct 1860 gtacacttta gggctaaggt ctaagtgacc acataggtag ttatgtggac ccaacgacct 1920 agcccacatg gtcttccctg ttcgactatc accctcaatc acaatactca tgggtctgaa 1980 aggccgcgca gcggcaccca cgacgttcac agaagcccat tcctcaagtt catcaggaac 2040 ttgatcaaaa gaagaagaaa gaaaaggaga aacataaaca tccggtggag gcgtaaaaat 2100 cctatctaaa ttagcattta aattatgaaa ttgtaaaaca taatctttgg gagctttctc 2160 ccttaaaata ttgagggccg cagccttgga ccctgaattg attgcctcgg catatgcgtc 2220 gttggcagat tggcaacctc ctctagctga tctgccatcg atctggaaaa ctccagagtc 2280 aatgaagtct ccgtctttct ccacataggc tttgacatct gaagagctct tagctctctg 2340 aatgttcgga tggaaatgtg ctgaccgggt tggggagatg aggtcgaaga atctgttgtt 2400 tgtgcattga tatttgcctt cgaattggac gagcacgtgt agatgaggtt ccccattctc 2460 gtgcaattct ctgcaaaccc taataaataa tttatttact ggggtttcta agttttgtaa 2520 ttgggaaagg gcctcttctt tagtaagaga gcagttagga tatgttagga aataattttt 2580 agcatttata ttgaatctcc ccgctctagg catattggtg gacactcaaa cttactatgg 2640 aatcggtgga atgggggaca atttatatgt gtccaccaat ggcaaattgg taattgttgt 2700 tacattaaac aaatttaaaa ttcaaattcc gacaaaagcg gccatccgca ttaatatt 2758 //