ID JN604492; SV 1; circular; genomic DNA; STD; VRL; 2759 BP. XX AC JN604492; XX DT 29-JAN-2012 (Rel. 111, Created) DT 29-JAN-2012 (Rel. 111, Last updated, Version 1) XX DE Chilli leaf curl virus isolate Taq1, complete genome. XX KW . XX OS Chilli leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2759 RA Khan A.J., Al-Matrushi A.M.O., Haq Q.M.I.; RT "Molecular characterization and infectivity of Chilli leaf curl virus from RT Oman"; RL Unpublished. XX RN [2] RP 1-2759 RA Khan A.J., Al-Matrushi A.M.O., Haq Q.M.I.; RT ; RL Submitted (22-AUG-2011) to the INSDC. RL Department of Crop Sciences, College of Agricultural and Marine Sciences, RL Sultan Qaboos University, P.O. Box-34, Al-Khod 123 Muscat, Sultanate of RL Oman XX DR MD5; d4563e6bc592638a71d1076aa918c5eb. XX FH Key Location/Qualifiers FH FT source 1..2759 FT /organism="Chilli leaf curl virus" FT /host="tomato" FT /isolate="Taq1" FT /mol_type="genomic DNA" FT /country="Oman" FT /collection_date="01-Apr-2011" FT /db_xref="taxon:172278" FT gene 150..515 FT /gene="V2" FT CDS 150..515 FT /codon_start=1 FT /gene="V2" FT /product="pre-coat protein" FT /db_xref="GOA:H2DGX7" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:H2DGX7" FT /protein_id="AEY77434.1" FT /translation="MWDPLLNEFPESVHGFRCMLAVKYLQLVENSYSPDTLGYDLIRDL FT ISVIRARNYVEATSRYNHFHARLEGTPSSQLRQPICQPCCCPHCPRHKGKGMGQQAHES FT EAQDVQDVQKPRCSEGM" FT gene 310..1083 FT /gene="V1" FT CDS 310..1080 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /note="encapsidation" FT /db_xref="GOA:H2DH02" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:H2DH02" FT /protein_id="AEY77435.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKAKAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGAPQDFGDVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT SENALMLYMACTHASNPVYATLKIRIYFYDSVSN" FT gene complement(1077..1481) FT /gene="C3" FT CDS complement(1077..1481) FT /codon_start=1 FT /gene="C3" FT /product="C3 protein" FT /db_xref="GOA:H2DGW2" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H2DGW2" FT /protein_id="AEY77436.1" FT /translation="MDSRTGEPITAAQAENGVFIWEITNPLYFKITKHHNRPFLRSQDI FT ITVQIRFNHNLRKALGMHKCFLTYRIWTTLQPQTGHFLRVFKTQVLKVLNNFAVISINN FT VNRAVDHVLWNVLDHVVYVNQSYSIKYNLY" FT gene complement(1222..1626) FT /gene="C2" FT CDS complement(1222..1626) FT /codon_start=1 FT /gene="C2" FT /product="C2 protein" FT /db_xref="GOA:H2DGW3" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H2DGW3" FT /protein_id="AEY77437.1" FT /translation="MRPSSPSQAHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALR FT CHGYGFTHRGTHHCSSSREWRVYLGDNKSPVFQDNKAPQQAIPEKPRHHHSADTVQSQP FT EESVGDAQMFSNLPNLDDLTASDWSFLKGI" FT gene complement(1529..2614) FT /gene="C1" FT CDS complement(1529..2614) FT /codon_start=1 FT /gene="C1" FT /product="Rep" FT /note="replication-associated protein" FT /db_xref="GOA:H2DGW4" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H2DGW4" FT /protein_id="AEY77438.1" FT /translation="MPKAGRFNINAKNYFLTYPNCSLTKEDALSQLQNLETPVNKLFIR FT VCRELHENGEPHLHVLVQFEGKYQCTNNRFFDLISPTRSAHFHPNIQRAKSSSDVKAYV FT EKDGDFIDSGVFQIDGRSARGGCQSANDAYAEAINSGSKAAALNILREKAPKDYVLQFH FT NLNANLDRIFTPPPDVYVSPFLSSSFDQVPDELEEWASVNVVGAAARPLRPMSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDASYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKHWALKNATFITLTGPL FT YSGSNQSAAQAGQEGDQTSSR" FT gene complement(2164..2457) FT /gene="C4" FT CDS complement(2164..2457) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:H2DGV3" FT /protein_id="AEY77439.1" FT /translation="MGNLIYTCSSNSKANINAQTTDSSTSFPQPGQHISIRTFRELRAL FT QMSKPMWRKTETSLTLEFSRSMADQLEEVANLPTTHMPRQSIQGPRLRPSIF" XX SQ Sequence 2759 BP; 759 A; 553 C; 636 G; 811 T; 0 other; accggatggc cgcgattttt ttttaccgtg gaccccgcga tgcacgtgct gacaaataca 60 tgtggaccaa ttaaaaacgt ccctcaaagc ctaattgttt cgtggtcccc tctataaact 120 tgggctccaa gtagtgggtt tttatcacaa tgtgggatcc tttactaaat gagtttcccg 180 aaagtgttca tgggtttagg tgtatgttag cagtgaaata tctgcaatta gtagaaaatt 240 catattcgcc agacacatta gggtacgatt taatcaggga tttaatttca gttattaggg 300 ctagaaatta tgtcgaagcg accagcagat ataatcattt ccacgcccgc ctcgaaggta 360 cgccgtcgtc tcaacttcga cagcccatat gccagccgtg ctgctgcccc cattgtccgc 420 gtcacaaagg caaaggcatg ggccaacagg cccatgaatc ggaagcccag gatgtacagg 480 atgtacagaa gcccagatgt tccgagggga tgtgaaggcc catgtaaggt ccagtctttt 540 gagtctagac acgatgtagt tcatataggg aaggttatgt gtattagtga tgttacccgt 600 ggtaccgggt taacccatag agtaggtaag cgtttctgtg ttaagtctgt ttatgtctta 660 gggaagatat ggatggatga gaatatcaag actaagaatc acacgaatag tgtgatgttc 720 ttccttgtcc gtgatcgtcg acctacaggt gcaccacaag attttggaga tgtgtttaat 780 atgttcgaca acgaacctag cactgccact gtgaagaata tgcatagaga tcgttatcag 840 gtcttgagga aatggcacgc aacggttact ggtggacagt acgcgtcgaa ggaacaggca 900 ttagttaaga agttcgttag ggttaacaat tatgttgtgt ataaccagca ggaagctgga 960 aaatatgaga atcatagtga gaatgctctg atgttgtata tggcgtgtac tcacgcctct 1020 aaccctgtgt atgctacatt gaagatacgt atctatttct atgattcagt atcgaattaa 1080 taaagattat attttattga atatgattgg tttacatata caacgtgatc taatacattc 1140 cataatacat gatcaactgc tctatttaca ttgttaatac taattacagc aaaattatta 1200 agcactttca atacttgggt tttaaatacc cttaagaaat gaccagtctg aggctgtaag 1260 gtcgtccaga ttcggtaggt tagaaaacat ttgtgcatcc ccaacgcttt cctcaggttg 1320 tgattgaacc gtatctgcac tgtgatgatg tcttggcttc tcaggaatgg cctgttgtgg 1380 tgctttgtta tcttgaaata caggggattt gttatctccc agataaacac gccattctct 1440 gcttgagctg cagtgatggg ttcccctgtg cgtgaatcca tagccgtggc aacgtaatgc 1500 gatgaaatat gaacagccgc aatcgaggtc aacgcgacga cgtctggtcc ccttcttggc 1560 cagcctgtgc tgcactttga ttggaacctg agtagagtgg gcctgtgagg gtgatgaagg 1620 tcgcattctt taaagcccaa tgtttgagtg cggaattctt ttcttcatcc aagaactctt 1680 tatagctgga attgggtcct ggattgcaga ggaagatagc gggaattcca cctttaattt 1740 gaactggctt tccgtatttt gtatttgatt gccagtccct ttgggccccc atgaattctt 1800 taaagtgttt tagataatgc gggtcgacgt catcaatgac gttatacgag gcatcattgc 1860 tgtacacttt agggctaagg tctaagtgac cacataggta gttatgtgga cccaacgacc 1920 tagcccacat ggtcttcccg gttcgactat caccctcaat cacaatactc atgggtctca 1980 aaggccgcgc agcggcaccc accacgttca cagaagccca ttcctcaagt tcatcaggaa 2040 cttgatcaaa agaagaagaa agaaaaggag aaacataaac atccggtgga ggcgtaaaaa 2100 tcctatctaa attagcattt aaattatgaa attgtaaaac ataatctttg ggagctttct 2160 cccttaaaat attgagggcc gcagccttgg accctgaatt gattgcctcg gcatatgcgt 2220 cgttggcaga ttggcaacct cctctagctg atctgccatc gatctggaaa actccagagt 2280 caatgaagtc tccgtctttc tccacatagg ctttgacatc tgaagagctc ttagctctct 2340 gaatgttcgg atggaaatgt gctgaccggg ttggggaaat gaggtcgaag aatctgttgt 2400 ttgtgcattg atatttgcct tcgaattgga cgagcacgtg tagatgaggt tccccattct 2460 cgtgcaattc tctgcaaacc ctaataaata atttatttac tggggtttct aagttttgta 2520 attgggaaag ggcgtcttct ttagtaagag agcagttagg atatgttagg aaataatttt 2580 tagcatttat attgaatctc cccgctttag gcatattggt ggacactcaa acttactatg 2640 caatcggtgg aatgggggac aatttatatg tgtccaccaa tggcaaattg gtaattgttg 2700 ttacattaaa aaaatttaaa attcaaattc cgacaaaagc ggccatccgc attaatatt 2759 //