ID JN604491; SV 1; circular; genomic DNA; STD; VRL; 2758 BP. XX AC JN604491; XX DT 29-JAN-2012 (Rel. 111, Created) DT 29-JAN-2012 (Rel. 111, Last updated, Version 1) XX DE Chilli leaf curl virus isolate Sh1, complete genome. XX KW . XX OS Chilli leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2758 RA Khan A.J., Al-Zaidi A.M.I., Haq Q.M.I., Al-Hinai F.M.; RT "Molecular characterization and infectivity of Chilli leaf curl virus from RT Oman"; RL Unpublished. XX RN [2] RP 1-2758 RA Khan A.J., Al-Zaidi A.M.I., Haq Q.M.I., Al-Hinai F.M.; RT ; RL Submitted (21-AUG-2011) to the INSDC. RL Department of Crop Sciences, College of Agricultural and Marine Sciences, RL Sultan Qaboos University, P.O. Box-34, Al-Khod 123 Muscat, Sultanate of RL Oman XX DR MD5; 691be99e85b913f5548ce2d4d26566a3. XX FH Key Location/Qualifiers FH FT source 1..2758 FT /organism="Chilli leaf curl virus" FT /host="pepper" FT /isolate="Sh1" FT /mol_type="genomic DNA" FT /country="Oman" FT /collection_date="01-Apr-2011" FT /db_xref="taxon:172278" FT gene 149..514 FT /gene="V2" FT CDS 149..514 FT /codon_start=1 FT /gene="V2" FT /product="pre-coat protein" FT /db_xref="GOA:H2DGV4" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:H2DGV4" FT /protein_id="AEY77429.1" FT /translation="MWDPLLNEFPESVHGFRCMLAVKYLQLVENTYSPDTLGYDLIRDL FT ILVIRARNYVEATSRYNHFHARLEGTPSSQLRQPICQPCCCPHCPRHKGKGMGQQAHES FT EAQDVQDVQKPRCSEGI" FT gene 309..1082 FT /gene="V1" FT CDS 309..1079 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /note="encapsidation" FT /db_xref="GOA:H2DGV5" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:H2DGV5" FT /protein_id="AEY77428.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKAKAWA FT NRPMNRKPRMYRMYRSPDVPRGFEGPCKVQSFESRHDVVHIGNVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGAPQDFGDVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVLYNQQEAGKYENH FT SENALMLYMACTHASNPVYATLKIRIYFYDSVSN" FT gene complement(1076..1480) FT /gene="C3" FT CDS complement(1076..1480) FT /codon_start=1 FT /gene="C3" FT /product="C3 protein" FT /db_xref="GOA:H2DGV6" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H2DGV6" FT /protein_id="AEY77430.1" FT /translation="MDSRTGEPITAAQAENGVFIWEITNPLYFKITEHHNRPFLRSHDI FT ITVQIRFNHNLRKALGMHKCFLTYRIWTTLQPQTGHFLRVFKTQVLKVLNNFAVISINN FT VNRAVDHVLWNVLHHVVYVNQSYSIKYNIY" FT gene complement(1221..1625) FT /gene="C2" FT CDS complement(1221..1625) FT /codon_start=1 FT /gene="C2" FT /product="C2 protein" FT /db_xref="GOA:H2DGV7" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H2DGV7" FT /protein_id="AEY77431.1" FT /translation="MRPSSPSQAHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALR FT CHGYGFTHRGTHHCSSSREWRVYLGDNKSPVFQDNRAPQQAIPEKPRHHHRADTVQSQP FT EESVGDAQMFSNLPNLDDLTASDWSFLKGI" FT gene complement(1528..2613) FT /gene="C1" FT CDS complement(1528..2613) FT /codon_start=1 FT /gene="C1" FT /product="Rep" FT /note="replication-associated protein" FT /db_xref="GOA:H2DGV8" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H2DGV8" FT /protein_id="AEY77432.1" FT /translation="MPRAGRFNINAKNYFLTYPNCSLTKEEALSQLQNLETPVNKLFIR FT VCRELHENGEPHLHVLVQFEGKYQCTNNRFFDLISPTRSAHFHPNIQRAKSSSDVKAYV FT EKDGDFIDSGVFQIDGRSARGGCQSANDAYAEAINSGSKAAALNILREKAPKDYVLQFH FT NLNANLDRIFTPPPEVYVSPFLSSSFDQVPVELEEWASENVVGAAARPLRPMSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDASYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKHWALKNATFITLTGPL FT YSGSNQSAAQAGQEGDQASSR" FT gene complement(2163..2456) FT /gene="C4" FT CDS complement(2163..2456) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:H2DGV3" FT /protein_id="AEY77433.1" FT /translation="MGNLIYTCSSNSKANINAQTTDSSTSFPQPGQHISIRTFRELRAL FT QMSKPMWRKTETSLTLEFSRSMADQLEEVANLPTTHMPRQSIQGPRLRPSIF" XX SQ Sequence 2758 BP; 761 A; 551 C; 631 G; 815 T; 0 other; accggatggc cgcgattttt tttatcatgg accccactat gcacgtgctg acaaagacat 60 gtggaccaat taaaaacgtc cctcaaagct taattgtttc gtggtcccct gtataaactt 120 gggctccaag tagtgggttt gtatcacaat gtgggatcct ttactaaatg agtttcccga 180 aagtgttcat gggtttaggt gtatgttagc agtgaaatat ctgcaattag tagaaaatac 240 gtattctcca gacacattag ggtacgattt aattagggat ttaattttag ttatcagggc 300 tagaaattat gtcgaagcga ccagcagata taatcatttc cacgcccgcc tcgaaggtac 360 gccgtcgtct caacttcgac agcccatatg ccagccgtgc tgctgccccc attgtccgcg 420 tcacaaaggc aaaggcatgg gccaacaggc ccatgaatcg gaagcccagg atgtacagga 480 tgtacagaag cccagatgtt ccgaggggat ttgaaggccc atgtaaggtc cagtcttttg 540 agtctagaca cgatgtagtt catataggga atgttatgtg tattagtgat gttacccgtg 600 gtacagggtt aacccataga gtaggtaaac gtttttgtgt taagtctgtg tatgtattag 660 gtaagatatg gatggatgag aatatcaaga ctaagaatca cacgaatagt gtgatgttct 720 tccttgtccg tgatcggcga cctacaggtg cgccacaaga ttttggagat gtgtttaaca 780 tgtttgacaa cgagcctagc actgccactg tgaagaatat gcacagagat cgttatcagg 840 tcttgaggaa atggcacgca acggttactg gcggacagta cgcgtcgaag gaacaggcat 900 tagttaagaa gttcgttagg gttaacaatt atgttttgta taaccagcag gaagctggaa 960 aatatgagaa tcatagtgag aatgctctga tgttgtatat ggcatgtact catgcctcta 1020 accctgtgta tgctacattg aagatacgta tctatttcta tgattcagta tcgaattaat 1080 aaatattata ttttattgaa tatgattggt ttacatatac aacgtgatgt aatacattcc 1140 ataatacatg atcaaccgct ctatttacat tgttaatact aattacagca aaattattaa 1200 gcactttcaa tacttgggtc ttaaataccc ttaagaaatg accagtctga ggctgtaagg 1260 tcgtccagat tcggtaggtt agaaaacatt tgtgcatccc caacgctttc ctcaggttgt 1320 gattgaaccg tatctgcacg gtgatgatgt cgtggcttct caggaatggc ctgttgtggt 1380 gctctgttat cttgaaatac aggggatttg ttatctccca gataaacacg ccattctctg 1440 cttgagctgc agtgatgggt tcccctgtgc gtgaatccat agccgtggca acgtaatgcg 1500 atgaaatatg aacagccgca atcgaggtca acgcgacgac gcctggtccc cttcttggcc 1560 agcctgtgct gcactttgat tggaacctga gtagagtggg cctgtgaggg tgatgaaggt 1620 cgcattcttt aaagcccaat gtttgagtgc ggaattcttt tcttcatcca agaactcttt 1680 atagctggaa ttgggtcctg gattgcataa gaagatagcg ggaattccac ctttaatttg 1740 aactggcttt ccgtattttg tatttgattg ccagtccctt tgggccccca tgaattcttt 1800 aaagtgtttt agataatgcg gatcaacgtc atcaatgacg ttatacgagg catcattgct 1860 gtacacttta gggctaaggt ctaagtgacc acataggtag ttatgtggac ccaacgacct 1920 agcccacatg gtcttcccgg ttctactatc accctctatc acaatactca tgggtctcaa 1980 aggccgcgca gcggcaccca ccacgttctc agaagcccat tcctcaagtt ctacaggaac 2040 ttgatcaaaa gaagaagaaa gaaaaggaga aacataaacc tccggtggag gtgtaaaaat 2100 cctatctaaa ttagcattta aattatgaaa ttgtaaaaca taatctttgg gagctttctc 2160 ccttaaaata ttgagggccg cagccttgga ccctgaattg attgcctcgg catatgcgtc 2220 gttggcagat tggcaacctc ctctagctga tctgccatcg atctggaaaa ctccagagtc 2280 aatgaagtct ccgtctttct ccacataggc tttgacatct gaagagctct tagctctctg 2340 aatgttcgga tggaaatgtg ctgaccgggt tggggaaatg aggtcgaaga atctgttgtt 2400 tgtgcattga tatttgcctt cgaattggac gagcacgtgt agatgaggtt ccccattctc 2460 gtgcaattct ctgcaaaccc taataaataa tttatttact ggggtttcta agttttgtaa 2520 ttgggaaagg gcctcttctt tagtaagaga gcagttggga tatgttagga aataattttt 2580 agcatttata ttgaatctcc ccgctctagg cattttggtg gacactcaaa cttactatgt 2640 aatcggtgga atgggggaca atttatatgt gtccaccaat ggcaaattgg taattgttgt 2700 tacatttaaa aaatttaaaa ttcaaaatcc gacaaaagcg gccatccgca ttaatatt 2758 //