ID JN604487; SV 1; circular; genomic DNA; STD; VRL; 2767 BP. XX AC JN604487; XX DT 29-JAN-2012 (Rel. 111, Created) DT 29-JAN-2012 (Rel. 111, Last updated, Version 1) XX DE Tomato yellow leaf curl virus isolate DT1, complete genome. XX KW . XX OS Tomato yellow leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2767 RA Khan A.J., Al-Matrushi A.M.O., Haq Q.M.I.; RT "Molecular characterization and infectivity of Tomato yellow leaf curl RT virus from Oman"; RL Unpublished. XX RN [2] RP 1-2767 RA Khan A.J., Al-Matrushi A.M.O., Haq Q.M.I.; RT ; RL Submitted (21-AUG-2011) to the INSDC. RL Department of Crop Sciences, College of Agricultural and Marine Sciences, RL Sultan Qaboos University, P.O. Box-34, Al-Khod 123 Muscat, Sultanate of RL Oman XX DR MD5; 77cc7979478ca8abd09ec6cceb3262bc. XX FH Key Location/Qualifiers FH FT source 1..2767 FT /organism="Tomato yellow leaf curl virus" FT /host="tomato" FT /isolate="DT1" FT /mol_type="genomic DNA" FT /country="Oman" FT /collection_date="01-Apr-2011" FT /db_xref="taxon:10832" FT gene 142..492 FT /gene="V2" FT CDS 142..492 FT /codon_start=1 FT /gene="V2" FT /product="pre-coat protein" FT /note="required for virus movement; V2 protein" FT /db_xref="GOA:H2DGT6" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:H2DGT6" FT /protein_id="AEY77503.1" FT /translation="MWDPLLNEFPDSVHGFRCMLAIKYLQSVEETYEPNTLGHDLIRDL FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV FT SKAQNVQNVSKP" FT gene 302..1081 FT /gene="V1" FT CDS 302..1078 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /note="capsid protein; V1 protein; required for FT encapsidation" FT /db_xref="GOA:H2DGT7" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:H2DGT7" FT /protein_id="AEY77504.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW FT TYRPMYRKPRMYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGSSPMDFGQVFNMFDN FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFRINSHVTYNHQEAAKYE FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN" FT gene complement(1075..1479) FT /gene="C3" FT CDS complement(1075..1479) FT /codon_start=1 FT /gene="C3" FT /product="C3 protein" FT /db_xref="GOA:H2DGT1" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H2DGT1" FT /protein_id="AEY77505.1" FT /translation="MDSRTGELITAHQAQNGVFIWEIENPLYFKITNHDERPFLMSHDI FT ISIQIRFNHNIRKVLGIHKCYLNFQIWTTLRPQTGRFLRVFRYQVLKYLDNLDVISINN FT VIRAVDHVLYNVLENTINVTETHDIKYKFY" FT gene complement(1220..1627) FT /gene="C2" FT CDS complement(1220..1627) FT /codon_start=1 FT /gene="C2" FT /product="C2 protein" FT /db_xref="GOA:H2DGT2" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H2DGT2" FT /protein_id="AEY77506.1" FT /translation="MQPSSPSTSHCSQVPIKIQHRIAKTKPVRRKRIDIDCGCSYYLHI FT NCINHGFTHRGTHHCSSSPEWRFYMGDRKSPVFQDHQPRREAISNEPRHHFNTDKIQSQ FT HQEGTGDSQMLSQLPNLDDLTASDWSFLKSI" FT gene complement(1551..2615) FT /gene="C1" FT CDS complement(1551..2615) FT /codon_start=1 FT /gene="C1" FT /product="Rep" FT /note="replication-associated protein" FT /db_xref="GOA:H2DGT3" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H2DGT3" FT /protein_id="AEY77507.1" FT /translation="MAAPNRFKINAKNYFLTYPKCSLNKEEALSQLLNLQTPTSKKFIR FT ICRELHEDGTPHLHVLIQFEGKFQCKNNRFFDLTSPTRSAHFHPNIQGAKSSSDVKTYM FT EKDGDILDHGVFQVDGRSARGGCQSANDAYAEAINAGSKAQALNILKEKAPRDFLLQFH FT NLNSNLDRYFQEPPAPYVSPFLSSSFNQVPDELEVWVSENVMSSAARPWRPNSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNATFVTLYEPL FT FSSANQNPTPHSED" FT gene complement(2165..2458) FT /gene="C4" FT CDS complement(2165..2458) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:H2DGU1" FT /protein_id="AEY77508.1" FT /translation="MGLLTCMFSSNSKESSSARTIDSSTSPPQPGQHISIRTFRELKAQ FT AMSKPTWRKTETSLIMEFSRSMEDQLEEVANLPTTHMPRQSTQGPKLRPLIY" XX SQ Sequence 2767 BP; 745 A; 520 C; 627 G; 875 T; 0 other; accggatggc cgcgattttt ttttggcccc acagcgcact aactgacaaa gatatctgca 60 ccaatgaaaa gagctcctca aagcttaatt gttttgtggt cccctattta aacttcgcca 120 ccaagtagtt tgtattgcat aatgtgggat ccacttctaa atgagtttcc tgactccgtt 180 cacggatttc gttgtatgtt agctattaaa tatttgcagt ccgttgagga aacttacgag 240 cccaatacat tgggtcacga tttaattagg gatcttatat ctgttgtaag ggcccgtgac 300 tatgtcgaag cgaccaggcg atataatcat ttccacgccc gtctcgaagg ttcgccgaag 360 gctgaacttc gacagcccat acagcagccg tgctgctgtc cccattgtcc aaggcacaaa 420 caagcgacga tcatggacgt acaggcccat gtatcgaaag cccagaatgt acagaatgta 480 tcgaagccct gatgttcccc gtggatgtga aggcccatgt aaagtccagt cttatgagca 540 acgggatgat attaagcata ctggtattgt tcgttgtgtt agtgatgtta ctcgtggatc 600 tggaattact cacagagtgg gtaagaggtt ctgtgttaaa tcgatatatt ttttaggtaa 660 agtctggatg gatgaaaata tcaagaagca gaatcacact aatcaggtca tgttcttctt 720 ggtccgtgat agaaggcctt atggaagcag cccaatggat tttggacagg tttttaatat 780 gttcgataat gagcccagta ccgcaaccgt gaagaatgat ttgcgggata ggtttcaagt 840 gatgaggaaa tttcatgcta cagttattgg tgggccctct ggaatgaagg aacaggcatt 900 agttaagaga ttttttagaa ttaacagtca tgtaacttat aatcatcagg aggcagccaa 960 gtatgagaat catactgaga atgctttgtt gttgtatatg gcatgtactc atgcctctaa 1020 tccagtgtat gcaactatga aaatacgtat ctatttctat gattcaatat caaattaata 1080 aaatttatat tttatatcat gagtttctgt tacatttatt gtgttttcaa gtacattata 1140 caatacatga tcaactgctc taattacatt gtttatggaa attacatcta aattatctaa 1200 atatttaaga acttgatatc taaatactct taagaaacga ccagtctgag gccgtaaggt 1260 cgtccagatt tggaagttga gataacattt gtgaatcccc agtaccttcc tgatgttgtg 1320 attgaatctt atctgtattg aaatgatgtc gtggctcatt agaaatggcc tctcgtcgtg 1380 gttggtgatc ttgaaataca ggggattttc tatctcccat ataaaaacgc cattctgggc 1440 ttgatgagca gtgatgagtt ccccggtgcg tgaatccatg attgatgcag ttgatgtgga 1500 ggtaatatga gcatccgcag tcgatgtcta tgcgcttacg tctgactggc ttagtcttcg 1560 ctatgcggtg ttggattttg attggcactt gagaacagtg gctcgtagag ggtgacgaag 1620 gttgcattct tgagagccca attttttaag gatatgtttt tttcctcgtc tagatattcc 1680 ctatatgatg aggtaggtcc tggattgcag aggaagatag tgggaattcc ccctttaatt 1740 tgaatgggtt tcccgtattt tgtgttgctt tgccagtccc tttgggcccc catgaattcc 1800 ttgaagtgct ttaaataatg cgggtctacg tcatcaatga cgttatacca cgcatcattg 1860 ctgtacacct ttggacttag gtctaaatgt ccacataaat aattatgtgg gcctagagac 1920 ctggcccaca ttgttttgcc tgttctgcta tcaccctcga tgacaatact attaggtctc 1980 catggccgcg cagcggaaga catgacgttc tccgacaccc atacttcaag ttcatctgga 2040 acttgattaa aagatgaaga taaaaaggga gaaacataag gagccggagg ctcctgaaaa 2100 tacctatcta aattactatt taaattatga aattggagta gaaagtctct tggggctttc 2160 tccttcagta tattaagggc ctgagctttg gaccctgcgt tgattgcctc ggcatatgcg 2220 tcgttggcag attggcaacc tcctctagct gatcttccat cgacctggaa aactccatga 2280 tcaaggatgt ctccgtcttt ctccatgtag gttttgacat cgcttgagct tttagctccc 2340 tgaatgttcg gatggaaatg tgctgacctg gttggggagg tgaggtcgaa gaatctattg 2400 ttcttgcact ggaactttcc ttcgaattgg atgagaacat gcaagtgagg agtcccatct 2460 tcgtgaagct ctctgcagat tctaatgaat tttttggaag tgggtgtttg gagatttaat 2520 aattgggaaa gtgcttcctc tttattaaga gagcacttgg gataagtgag aaaataattt 2580 ttggcattta ttttaaaccg attgggggct gccatgctga cttagtcaat cggtgtctct 2640 caatttgttc tatgtatcgg tgtattggag tcctatatat atggagactc taatggcata 2700 attgtaataa aagaacttta atttgaattt caaatgaaaa gcataaagcg gccatccgtc 2760 taatatt 2767 //