ID JN604485; SV 1; circular; genomic DNA; STD; VRL; 2776 BP. XX AC JN604485; XX DT 29-JAN-2012 (Rel. 111, Created) DT 29-JAN-2012 (Rel. 111, Last updated, Version 1) XX DE Tomato yellow leaf curl virus isolate KW2, complete genome. XX KW . XX OS Tomato yellow leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2776 RA Khan A.J., Al-Matrushi A.M.O., Haq Q.M.I.; RT "Molecular characterization and infectivity of Tomato yellow leaf curl RT virus from Oman"; RL Unpublished. XX RN [2] RP 1-2776 RA Khan A.J., Al-Matrushi A.M.O., Haq Q.M.I.; RT ; RL Submitted (20-AUG-2011) to the INSDC. RL Department of Crop Sciences, College of Agricultural and Marine Sciences, RL Sultan Qaboos University, P.O. Box-34, Al-Khod 123 Muscat, Sultanate of RL Oman XX DR MD5; f8a7af8955ea16a4f40dd16f2c751db4. XX FH Key Location/Qualifiers FH FT source 1..2776 FT /organism="Tomato yellow leaf curl virus" FT /host="tomato" FT /isolate="KW2" FT /mol_type="genomic DNA" FT /country="Oman" FT /collection_date="01-Apr-2011" FT /db_xref="taxon:10832" FT gene 135..485 FT /gene="V2" FT CDS 135..485 FT /codon_start=1 FT /gene="V2" FT /product="pre-coat protein" FT /note="required for virus movement; V2 protein" FT /db_xref="GOA:H2DGR4" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:H2DGR4" FT /protein_id="AEY77492.1" FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQAVEQTYEPNTLGHDLIRDL FT ISVIRARDYVEATRRYNHFHARLEGSPKAEFRQPIQQPCCCPHCPRHKQATIMDVQAHV FT PEAQNIQNVSKP" FT gene 295..1074 FT /gene="V1" FT CDS 295..1071 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /note="capsid protein; V1 protein; required for FT encapsidation" FT /db_xref="GOA:H2DGS0" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:H2DGS0" FT /protein_id="AEY77493.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAAPIVQGTNKRRSW FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDVKHTGIVRCVSDVTRGSGITH FT RVGKRFCVKSIYFLGKIWMDENIKKQNHTNQVMFFLVRDRRPYGSSPMDFGQVFNMFDN FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQAIVKRFFRINSHVTYNHQEAAKYE FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN" FT gene complement(1068..1472) FT /gene="C3" FT CDS complement(1068..1472) FT /codon_start=1 FT /gene="C3" FT /product="C3 protein" FT /db_xref="GOA:H2DGS1" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H2DGS1" FT /protein_id="AEY77494.1" FT /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKITEHSQRPFLMNHDI FT ISIQIRFNHNIRKELGIHKCFLNFQIWTTLQPQTGRFLRVFRYQVLKYLDNLGVISINN FT VIRAVDHVLYDVLENTINVTESHDIKYKFY" FT gene complement(1213..1620) FT /gene="C2" FT CDS complement(1213..1620) FT /codon_start=1 FT /gene="C2" FT /product="C2 protein" FT /db_xref="GOA:H2DGS2" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H2DGS2" FT /protein_id="AEY77495.1" FT /translation="MQPSSPSTSHCSQVPIKVQHKISKKRPIRRKRVDLDCGCSYYLHI FT NCNNHGFTHRGTHHCSSSREWRFYLGDKQSPLFQDNRTQPEAISNEPRHHFHSDKIQPQ FT YQEGVGDSQMFSQLPDLDDITASDWSFLKSI" FT gene complement(1535..2608) FT /gene="C1" FT misc_feature complement(1535..2608) FT /gene="C1" FT /note="similar to Rep protein due to mutation; FT replication-associated protein" FT gene complement(2158..2451) FT /gene="C4" FT CDS complement(2158..2451) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:H2DGS3" FT /protein_id="AEY77496.1" FT /translation="MGLLTCMFSSNSKGSSSARTIDSSTSPPQPGQHISIRTFRELKAQ FT AMSKPTWRKTETCLIMEFSRSMEDQLEEVANLPTTHMPRQSTQGPKLRPSIY" XX SQ Sequence 2776 BP; 751 A; 538 C; 622 G; 865 T; 0 other; accggatggc cgcgcccctc tttttcgtgg gccccaaaca tgtcactgtc aaccaatcaa 60 attgcatcct caaacgttag ataagtgtgc tgttgtcttt atatacttgg tccccaagta 120 gtttgttttc caaaatgtgg gatccacttc taaatgaatt tccggaatct gttcacggat 180 ttcgttgtat gctagctatt aaatatttgc aggccgttga gcaaacatac gagcccaata 240 ctttgggcca cgatttaatt agggatctta tctctgttat aagggcccgt gattatgtcg 300 aagcgaccag gcgatataat catttccacg cccgtctcga aggttcgccg aaggctgaat 360 ttcgacagcc catacagcag ccgtgctgct gcccccattg tccaaggcac aaacaagcga 420 cgatcatgga cgtacaggcc catgtaccgg aagcccagaa tatacagaat gtatcgaagc 480 cctgatgttc cccgtggatg tgaaggccca tgtaaagtcc agtcttatga gcaacgggat 540 gatgttaagc atactggtat tgttcgttgt gttagtgatg ttactcgtgg atctggaatt 600 acccacagag tgggtaagag gttctgtgtt aaatcgatat attttttagg taaaatctgg 660 atggatgaaa atatcaagaa gcagaatcac actaatcagg tcatgttctt cttggtccgt 720 gatagaaggc cctatggaag cagcccaatg gattttggac aggtttttaa tatgttcgat 780 aatgagccca gtaccgcaac cgtgaagaat gatttgcggg ataggtttca agtgatgagg 840 aaatttcatg ctacagttat tggtgggccc tctggaatga aggaacaggc aatagttaag 900 agatttttta gaattaacag tcatgtaact tataatcatc aggaggcagc caagtacgag 960 aaccatactg agaatgcctt gttattgtat atggcatgta ctcatgcctc taatccagtg 1020 tatgcaacta tgaaaatacg catctatttc tatgattcaa tatcaaatta ataaaattta 1080 tattttatat catgactttc tgttacattt attgtgtttt caagtacatc atacaataca 1140 tgatcaactg ctctgattac attgttaatg gaaattacac caagattatc taaatattta 1200 agaacttgat atctaaatac tcttaagaaa cgaccagtct gaggctgtaa tgtcgtccaa 1260 atctggaagt tgagaaaaca tttgtgaatc cccaactcct tcctgatatt gtggttgaat 1320 cttatctgaa tggaaatgat gtcgtggttc attagaaatg gcctctggct gtgttctgtt 1380 atcttgaaat agaggggatt gtttatctcc cagataaaaa cgccattctc tgcttgagga 1440 gcagtgatga gttcccctgt gcgtgaatcc atgattattg cagttgatgt ggaggtagta 1500 tgagcatcca caatctaggt ctacacgctt acgcctaatt ggtctcttct tggatatctt 1560 gtgttggacc ttgattggta cttgcgaaca gtggctcgtg gagggtgacg aaggttgcat 1620 tcttgagagc ccaatttttc aaggatatgt ttttttcttc gtctagatat tctttatatg 1680 aggaggtagg tcctggattg cagaggaaga tagtgggaat tcccccttta atttgaatgg 1740 gcttcccgta ctttgtgttg ctttgccagt ccctctgggc ccccatgaat tctttgaagt 1800 gctttaaata atgcgggtct acgtcatcaa tgacgttata ccacgcatca ttactgtaca 1860 cctttggact taggtccaga tgtccacata aataattatg tgggcctaga gacctggccc 1920 acattgtttt gccggtcctg ctatcaccct cgatgataat actattaggt ctccatggcc 1980 gcgcagcgga agacatgacg ttctcggaca cccagacttc aagttcttca ggaacttggt 2040 taaaagaaga agataaaaaa ggagaaatat aaggagccgg tggctcctga aaaatcctat 2100 ctaaattact atttaaatta tgaaattgga gtagaaagtc tcttggtgct ttctccttca 2160 gtatattgag ggcctgagct ttggaccctg cgttgattgc ctcggcatat gcgtcgttgg 2220 cagattggca acctcctcta gctgatcttc catcgacctg gaaaactcca tgatcaagca 2280 tgtctccgtc tttctccatg taggttttga catcgcttga gcttttagct ccctgaatgt 2340 tcggatggaa atgtgctgac ctggttgggg aggtgaggtc gaagaatcta ttgttcttgc 2400 actggaactt cccttcgaat tggatgagaa catgcaagtg aggagtccca tcttcgtgaa 2460 gctctctgca gattctaatg aattttttgg aagtgggtgt ttggagattt aataattggg 2520 aaagtgcttc ctctttagta agagagcact tgggataagt gagaaaataa tttttggcat 2580 ttattttaaa ccgattgggg gctgccatgc tgacttagtc aatcggtgtc tctcaatttg 2640 ctctatgtat cggtgtactg gagtcctata tatatggaga ctctaatggc attttggtaa 2700 tttggtaaaa gtacattgca atttaaaatt caaaattcaa aaatcaaatc attaaagcgg 2760 ccatccgtat aatatt 2776 //