ID JN604484; SV 1; circular; genomic DNA; STD; VRL; 2777 BP. XX AC JN604484; XX DT 29-JAN-2012 (Rel. 111, Created) DT 29-JAN-2012 (Rel. 111, Last updated, Version 1) XX DE Tomato yellow leaf curl virus isolate KW1, complete genome. XX KW . XX OS Tomato yellow leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2777 RA Khan A.J., Al-Matrushi A.M.O., Haq Q.M.I.; RT "Molecular characterization and infectivity of Tomato yellow leaf curl RT virus from Oman"; RL Unpublished. XX RN [2] RP 1-2777 RA Khan A.J., Al-Matrushi A.M.O., Haq Q.M.I.; RT ; RL Submitted (20-AUG-2011) to the INSDC. RL Department of Crop Sciences, College of Agricultural and Marine Sciences, RL Sultan Qaboos University, P.O. Box-34, Al-Khod 123 Muscat, Sultanate of RL Oman XX DR MD5; 0984a0ede4cc9c5c9b27a32dbe2a8c1d. XX FH Key Location/Qualifiers FH FT source 1..2777 FT /organism="Tomato yellow leaf curl virus" FT /host="tomato" FT /isolate="KW1" FT /mol_type="genomic DNA" FT /country="Oman" FT /collection_date="01-Apr-2011" FT /db_xref="taxon:10832" FT gene 135..485 FT /gene="V2" FT CDS 135..485 FT /codon_start=1 FT /gene="V2" FT /product="pre-coat protein" FT /note="required for virus movement; V2 protein" FT /db_xref="GOA:H2DGR4" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:H2DGR4" FT /protein_id="AEY77487.1" FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQAVEQTYEPNTLGHDLIRDL FT ISVIRARDYVEATRRYNHFHARLEGSPKAEFRQPIQQPCCCPHCPRHKQATIMDVQAHV FT PEAQNIQNVSKP" FT gene 295..1074 FT /gene="V1" FT CDS 295..1071 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /note="capsid protein; V1 protein; required for FT encapsidation" FT /db_xref="GOA:H2DGR5" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:H2DGR5" FT /protein_id="AEY77488.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAAPIVQGTNKRRSW FT MYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDVKHTGIVRCVSDVTRGSGITH FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGSSPMDFGQVFNMFDN FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFRINSHVTYNHQEAAKYE FT NHTENALLLYMACTHASNPVYVTMKIRIYFYDSISN" FT gene complement(1068..1472) FT /gene="C3" FT CDS complement(1068..1472) FT /codon_start=1 FT /gene="C3" FT /product="C3 protein" FT /db_xref="GOA:H2DGR6" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H2DGR6" FT /protein_id="AEY77489.1" FT /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKITEHSQRPFLMNHDI FT ISIQIRFNHNIRKELGIHKCFLNFRIWTTLQPQTGRFLRVFRYQVLKYLDNLGVISINN FT VIRAVDHILYDVLENTINVTESHDIKYKFY" FT gene complement(1213..1620) FT /gene="C2" FT CDS complement(1213..1620) FT /codon_start=1 FT /gene="C2" FT /product="C2 protein" FT /db_xref="GOA:H2DGR7" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H2DGR7" FT /protein_id="AEY77490.1" FT /translation="MLPSSPSTSHCSQVPIKVQHKISKKRPIRRKRVDLDCGCSYYLHI FT NCNNHGFTHRGTHHCSSSREWRFYLGDKQSPLFQDNRTQPEAISNEPRHHFHSDKIQPQ FT YQEGVGDSQMFSQLPDLDDITASDWSFLKSI" FT gene complement(1521..2609) FT /gene="C1" FT misc_feature complement(1521..2609) FT /gene="C1" FT /note="similar to Rep protein due to mutation; FT replication-associated protein" FT gene complement(2159..2452) FT /gene="C4" FT CDS complement(2159..2452) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:H2DGR8" FT /protein_id="AEY77491.1" FT /translation="MGLLTCMFSSNSKGSSSARTIDSSTSPPQPGQHISIRTFRELKAQ FT AMSKPTWRKTETSLIMEFSRSMEDQLEEVANLPTTHMPRQSTQGPKLRPSIY" XX SQ Sequence 2777 BP; 748 A; 537 C; 625 G; 867 T; 0 other; accggatggc cgcgcccctc ttttacgtgg gccccacaca tgtctctgtc aaccaatcaa 60 attgcatcct caaacgttag ataagtgtcc tgttgtcttt atatacttgg tccccaagta 120 gtttgttttc caaaatgtgg gatccacttc taaatgaatt tccggaatct gttcacggat 180 ttcgttgtat gttagctatt aaatatttgc aggccgttga gcaaacatac gagcccaata 240 ctttgggcca cgatttaatt agggatctta tttctgttat aagggcccgt gattatgtcg 300 aagcgaccag gcgatataat catttccacg cccgtctcga aggttcgccg aaggctgaat 360 ttcgacagcc catacagcag ccgtgctgct gcccccattg tccaaggcac aaacaagcga 420 cgatcatgga tgtacaggcc catgtaccgg aagcccagaa tatacagaat gtatcgaagc 480 cctgatgttc cccgtggatg tgaaggccca tgtaaagtcc agtcttatga gcaacgggat 540 gatgttaagc atactggtat tgttcgttgt gttagtgatg ttactcgtgg atctggaatt 600 acccacagag tgggtaagag gttctgtgtt aaatcgatat attttttagg taaagtctgg 660 atggatgaaa atatcaagaa gcagaatcac actaatcagg tcatgttctt cttggtccgt 720 gatagaaggc cctatggaag cagcccaatg gattttggac aggtttttaa tatgttcgat 780 aatgagccca gtaccgcaac cgtgaagaat gatttacggg ataggtttca agtgatgagg 840 aaatttcatg ctacagttat tggtgggccc tctggaatga aggaacaggc attagttaag 900 agatttttta gaattaacag tcatgtaact tataatcatc aggaggcagc caagtacgag 960 aaccatactg agaatgcttt gttattgtat atggcatgta ctcatgcctc taatccagtg 1020 tatgtaacta tgaaaatacg catctatttc tatgattcaa tatcaaatta ataaaattta 1080 tattttatat catgactttc tgttacattt attgtgtttt caagtacatc atacaatata 1140 tgatcaactg ctctgattac attgttaatg gaaattacac caagattatc taaatactta 1200 agaacttgat atctaaatac tcttaagaaa cgaccagtct gaggctgtaa tgtcgtccaa 1260 atccggaagt tgagaaaaca tttgtgaatc cccaactcct tcctgatatt gtggttgaat 1320 cttatctgaa tggaaatgat gtcgtggttc attagaaatg gcctctggct gtgttctgtt 1380 atcttgaaat agaggggatt gtttatctcc cagataaaaa cgccattctc tgcttgagga 1440 gcagtgatga gttcccctgt gcgtgaatcc atgattattg cagttgatgt ggaggtagta 1500 tgagcatcca cagtctaggt ctacacgctt acgccgtatt ggtctcttct tggatatctt 1560 gtgttggacc ttgattggta cttgcgaaca gtggctcgtg gagggtgacg aaggtagcat 1620 tcttgagagc ccaatttttc aagggatatg tttttttctt cgtctagata ttctttatat 1680 gaggaggtag gtcctggatt gcagaggaag atagtgggaa ttcccccttt aatttgaatg 1740 ggcttcccgt actttgtgtt gctttgccag tccctctggg cccccatgaa ttccttgaag 1800 tgctttaaat aatgcgggtc tacgtcatca atgacgttgt accacgcatc attactgtac 1860 acctttggac ttaggtctaa atggccacac aaataattat gtgggcctag agacctggcc 1920 cacattgttt tgccggtcct gctatcaccc tcgatgataa tactattcgg tctccatggc 1980 cgcgcagcgg aagacaagac gttctctgac acccagactt caagttcctc aggaacttgg 2040 ttaaaagaag aagataaaaa aggagaaata taaggagccg gtggctcttg aaaaatccta 2100 tctaaattac tatttaaatt atgaaattgg agtagaaagt ctcttggggc tttctccttc 2160 aatatattga gggcctgagc tttggaccct gcgttgattg cctcggcata tgcgtcgttg 2220 gcagattggc aacttcctct agctgatctt ccatcgacct ggaaaactcc atgatcaagg 2280 atgtctccgt ctttctccat gtaggttttg acatcgcttg agcttttagc tccctgaatg 2340 ttcggatgga aatgtgctga cctggttggg gaggtgaggt cgaagaatct attgttcttg 2400 cactggaact tcccttcgaa ttggatgaga acatgcaagt gaggagtccc atcttcgtga 2460 agctctctgc agattctaat gaattttttg gaagtgggtg tttggagatt taataattgg 2520 gaaagtgctt cctctttagt aagagagcac ttgggataag tgagaaaata atttttggca 2580 tttattttaa accgattggg ggctgccatg ctgacttagt caatcggtgt ctctcaattt 2640 gctctatgta tcggtgtact ggagtcctat atatatggat actctagtgg cattttggta 2700 atttggtaaa agtacattgc aattcaaaat tcaaaattca aaaatcaaat cattaaagcg 2760 gccatccgta taatatt 2777 //