ID JN603241; SV 1; linear; genomic RNA; STD; VRL; 8112 BP. XX AC JN603241; XX DT 18-JAN-2012 (Rel. 111, Created) DT 30-DEC-2012 (Rel. 115, Last updated, Version 2) XX DE Phytophthora infestans RNA virus 3, complete genome. XX KW . XX OS Phytophthora infestans RNA virus 3 OC Viruses; Riboviria; unclassified Riboviria. XX RN [1] RP 1-8112 RX DOI; 10.1016/j.virol.2012.10.012. RX PUBMED; 23146209. RA Cai G., Krychiw J.F., Myers K., Fry W.E., Hillman B.I.; RT "A new virus from the plant pathogenic oomycete Phytophthora infestans with RT an 8 kb dsRNA genome: The sixth member of a proposed new virus genus"; RL Virology 435(2):341-349(2013). XX RN [2] RP 1-8112 RA Cai G., Myers K., Fry W.E., Hillman B.I.; RT ; RL Submitted (22-AUG-2011) to the INSDC. RL Plant Biology and Pathology, Rutgers University, 59 Dudley Rd, New RL Brunswick, NJ 08901, USA XX DR MD5; 33b03abee35c16c0db3561fea89393df. DR EuropePMC; PMC4357927; 25595766. XX FH Key Location/Qualifiers FH FT source 1..8112 FT /organism="Phytophthora infestans RNA virus 3" FT /host="Phytophthora infestans" FT /mol_type="genomic RNA" FT /country="USA:Florida" FT /collection_date="2005" FT /db_xref="taxon:1133557" FT CDS 849..4739 FT /codon_start=1 FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:H2DG67" FT /protein_id="AEX87901.1" FT /translation="MQSIGSAFDQAERGAGFDRSRDMGSRPSDVLHSTSGHVGRTGPDG FT SNGRVVDAISTPVLPACNNAQMVPTQLGAYTVDQYFGKRISWDSYSFEALDRRAEITAS FT GRYGYDSEYIRRVDMALPERFNLPSRVILGGQLDAAAHTVVRNSPTLPLLRLTTRPEPP FT RRDTRPFYAEAEVLQEVEDGGIVAQATLKTFNHVLSSHRYFGLQGSVFKEEWKVAEADR FT IRRMAQLTRLASHGHLYVRMFSKLLCMFNSALVREQYTPVGVGAHTSFEGPQHAAAARP FT AVYWADAFPPRLSAEVEVYTVAADLAAVANQVAVALTRGFHVYNIAAGTLVRYARRIDM FT LNDWGVWRAAADQIAAANVQAALSDLRRYGKNAARGIAKLEPKELPEVTVGGEDQLWEE FT FLLIHDRRRYLIDAEGVPAEALHIWMVALAARHRINCREVQVGGVARVFVPASESVTWE FT CDYAGVYIHTGCQHVEEKKRLFDAMAYSDRVDDSHNLSAHAILDSIRWLVLKTGAEADL FT VQAVELVDSLSAGYTSMELRGVATGVSTAFTGLMLSHSLRVPFDATLPAYLYPFRVNAQ FT LLSETEEWLGLRPNMRLNMMYYNCIMQSNAFGWASFASSAEGGCFNLAAAGLTGSAAAQ FT QRHGRELTTRRGEYSLALHDRMVLSCCAHAYGWSPSKALLLSIQPERVVRLSIVDGTDR FT SFHSLWQVHTVPHAALFYEEQWLVKKIPDYAVLPMPRGTVKWPEDKARPVVDSAADASE FT VRVGATMSPFDYKYWLADGGQAYSLQYYVAANAATGTVGNAARYSAAGEYTRLGVWRKP FT VQARWPAAPATLDLAGRGGMRMAGELSDYIDPYMLSMYNHEHKLPNAFGVQRYHNGAVT FT VGARRSWFQLSQGAADIAPTISYEAPSWAVREVEPIADYYLAALVDPLEGKFTGFHWAS FT LAGLKPGVGQGRDVASASLAPFGLNPIRSSSALANDNDPHQPRGRPVKRTAAGRRVGQA FT IDAARARTRARSETPPPPLLDDCEGEDAGVNSTATLSMDQGDVTPTLITPNAGGDYVTA FT DGKVVKQVRILQSGGNATRLRDVRSRPSRTVRGRVVGGGGAATPARARVETTSQQRAEG FT IASALASAVRTPLATARHTGSALREGLRAAATKGQDAFLNTLRSAERPEAGLTRANRKI FT AAGVISEALEAGSLGYDQLAVVLQHLPALRKQLPSGVTAHLPLPAQEEHETVEVEVLSP FT KGVDELAGREVELTDTAAYEAQSNLQQEAAAWSRPAITPGMGESAGEALREEGAPRLPI FT LDDTESDSAPLN" FT CDS 5012..8047 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:H2DG68" FT /db_xref="InterPro:IPR001795" FT /db_xref="UniProtKB/TrEMBL:H2DG68" FT /protein_id="AEX87902.1" FT /translation="MNLAFQVAGVTPAYAMMAWLYLTPTPPSVYTILPVLGQLMTAVLH FT SDIARTREPGVPCPIADVWDMRRNPATVRTKAKQWAVAFTGRTWDGSLWKDLPGYRAIQ FT PSSCGCYILSTSQLAPVTHFVAEQGESVCEAHTRAHAKFLHPSTTLDTLPTEYLVGWNL FT IFPPERSSADGKQLLDANAVLSNCSESIRKAFSDKIVREGVPDWTNIMVGNVALCAEHD FT PAILDVMAMIPRGTSFLGHLKCLKKIHTHVRVTGLSLTTGLSEDAAYRRRFYGLDYMMG FT RSDFYPLDFLDEMVSRMVPPSKHALPRMNGKELVFDKEEYNKLFAATVDKALREILLPE FT THLLSFEELMERRLNWVSSGSAPGVKLTHTVGDTTEKGGVNKRVAFTHLDTAALRREMH FT NHREAVLHSRHATKFEPGKKRALWNTGLMHYSSSSVLLEQFANNERKNVPWYMPSHTSA FT FSTAQDFVRVRTLRERIGVMWDFSDFNINHLLEHMAYLYKRAGEILVERNVSGKGDSDV FT LAAAKWVAASTMETWLEDAESGVTAKVKRSLMTGVRGTSFVNTILNHVYTEMAREYALR FT LGGVQLLNDPTYAFGDDVFSSADSHAKAVLFCHVMNTLGTAGTTYKINLELGELLRVSY FT DETGFSGYPLRALVGLVSGEYFEGNAINDIHQRAAAFHEQVRKCVARGANLDIDKWYKI FT LMNRHCSLKVTKASGKRLNIEPNIQLIYTPAVFGGLGLIKSEMPKTMRLHEWTSTVRYP FT IFEFERGFAQSIVGTGFRDRELIVRLVPGEERKRLIGVATNEVGQSIIGGKAPPSQVKY FT AFRKYVDGFVAWRKGITKGLPIDLARDSEISMDVGRAEALWFAAMRGRDTSHVYDSQTS FT VSSMAGFSSNSAFSQTLDYQVRVNGHSLSQAMIAIATKSMPVHMRLRVFTLATRLSQIP FT AQYRRAWFNGEFGFLPVVDCGSAKLNSMVRWMTMSMVESDIARYLVGTKREIVIRVAGL FT EQRVRRYVLSTVRRMGITHLSD" XX SQ Sequence 8112 BP; 1795 A; 1968 C; 2466 G; 1883 T; 0 other; tgagatttac gcgcgagcgt agatccgccc tagacgagtg gtccaactgg cagttaaagc 60 tagccaggga ctgctcgggt caaagctagt cagttgccga gtggcgacgg cggctgatac 120 tagagaaggc gacaccaagt gtggacgctg actcgcacga ccttaaacgt cttgggtgcg 180 cgtaactgca ggttttggca agcttgtagc ctagcgtgag cttcagtgtc atggttaagt 240 caagaacata aaccggatag cactggagcc gaaaggcgat tacccgtaga agctggcttt 300 gccggtgtag tgttctggta tggacacgct aggggtgggt cgtcggttgt ttaacgcgag 360 tggggtatgc taaagcatta accacttgag gcttagcgtg aaaaactaag cccgcgaatg 420 accatgctaa tcggcaatag ccgtgtagtt gtgcacacaa ctatgtcaca ggggtggccc 480 tgtataccgg tatcttctta cggtatacta ccaagttatg ttaacctgcg gtgcgatgaa 540 taagtatcag aagcagggtg tggcagcagg aggaattctg ttgttgctaa cgtacgctca 600 actggcctca cggcagcggg taagaaccgt atgagttggg tggaacgtgc cttgggcgat 660 agacgtccag ggtggaacgg ccggataact tggggaagca gaaagctgcg gggattgaat 720 ggcctgccta cgggtgcctg atagtgacgg aacatattgg ataacgttaa tccaattttc 780 aaataattaa cctctccgca gcctagcagc tgggatacat agcgggttaa ctactattaa 840 cgataaagat gcagagcata ggttctgctt tcgatcaagc tgagcgcggt gccggattcg 900 accgctcgcg cgacatgggg tcaaggccct cggatgtgct tcacagcact agcggccacg 960 tgggtcgcac agggccagat ggctcgaatg gacgggtggt tgatgcaatt tcgactcccg 1020 tgctaccggc gtgtaacaac gcccagatgg tgccaacgca attgggcgcc tacaccgttg 1080 accagtattt tgggaaacgc atctcgtggg attcatattc ttttgaagct ttggatcgcc 1140 gcgctgaaat cactgctagt ggccgttacg gttatgacag tgaatacata cgccgggtgg 1200 acatggctct acccgagcgc ttcaatctac cgagtcgggt gatacttggt ggtcagctcg 1260 acgctgccgc acacacagtt gtgcgtaatt cacccactct cccgcttttg cgattgacca 1320 cacggcctga accgccgaga agagacacca ggcctttcta cgccgaggct gaagtgttac 1380 aagaagttga agacgggggc atcgtagcac aagctacatt gaagacattc aatcacgtat 1440 tgtctagcca tcgatacttt gggttgcaag gttcggtgtt taaggaggag tggaaggttg 1500 ctgaggctga tcgcattagg cggatggctc agttgaccag gttggcttcg cacggtcatt 1560 tgtatgtgcg catgtttagt aaattattat gtatgtttaa ttctgctctc gtccgggagc 1620 aatatacgcc agtgggcgtg ggagcgcaca caagcttcga gggcccacaa catgcggctg 1680 cagctcggcc tgcggtatat tgggccgatg cctttcctcc tcggttatca gctgaggttg 1740 aggtgtatac agtggcggct gatttggctg ccgtggctaa ccaggtggcg gtagctctca 1800 cgaggggttt ccacgtgtac aacatcgccg ctggaacatt ggtcaggtat gcacgacgta 1860 tcgacatgct caacgattgg ggcgtatggc gggccgccgc cgatcaaata gctgctgcca 1920 acgtgcaggc ggcactgtct gacttaaggc gctacggcaa gaacgcggct cgcgggattg 1980 ccaaattaga gcctaaggag ttgcccgagg tgacggttgg cggcgaagat caactttggg 2040 aggaattcct gttgattcac gaccgcagac gttaccttat cgacgcggaa ggggtgcctg 2100 ccgaggcact gcacatctgg atggtggctt tagcggctag acaccgtatt aattgccggg 2160 aggtgcaagt tggcggtgtg gctagggtgt ttgtaccggc atcggaatcg gtaacgtggg 2220 aatgtgatta cgctggggtg tatatccaca ctggctgtca gcacgtggag gaaaagaaac 2280 gcctcttcga cgccatggcg tactctgacc gcgtcgacga ttcacacaac ctgagtgcgc 2340 atgctatctt ggatagtatc cgttggctgg ttttgaagac gggggcagaa gccgacctgg 2400 ttcaggcagt cgagctggtg gattcacttt cagctggtta cactagcatg gagttgcgtg 2460 gtgtagcaac gggggttagc acggccttca ctggcctcat gctaagccat tcgctgaggg 2520 taccgttcga cgcgaccctg ccagcgtatt tgtacccgtt cagggtcaac gctcagctct 2580 tgtctgagac tgaagaatgg ctgggtttgc ggccaaacat gcggttgaat atgatgtact 2640 acaattgcat catgcagtcg aacgccttcg gctgggcttc gtttgcgtca tcggctgaag 2700 gaggttgctt caatttggcg gcggcggggc ttacgggcag tgccgcggcg cagcagcgtc 2760 atgggcgcga gctcacaacg cgtaggggtg agtactctct tgcgctccat gaccgtatgg 2820 ttttgtcgtg ttgtgcgcat gcttacggct ggtcgccttc caaggcactg ctcttgagca 2880 ttcagcctga gcgggtagtg cgcttgtcaa tcgtagacgg cacagaccgg tcgttccact 2940 cgctttggca agtgcacacg gtgcctcacg cggcattgtt ttacgaggag cagtggttgg 3000 ttaagaagat acccgactac gcagttctcc ctatgcctcg ggggaccgta aagtggccag 3060 aggataaggc tcggccagtc gttgactcgg cggcagacgc ttcggaggtg cgtgtggggg 3120 cgaccatgtc gccttttgat tataagtact ggttagcaga tggcggccag gcttattcgc 3180 tgcaatatta cgttgccgcg aacgccgcca ccggcacggt tggcaatgcg gcacgttata 3240 gcgctgcagg ggaatacacc cgtttgggcg tctggcgcaa gccagtccag gctcggtggc 3300 ccgctgcccc agcgacgcta gatttagctg gacgtggtgg catgagaatg gctggcgagt 3360 tgtcggatta catcgatcca tacatgttgt cgatgtataa ccacgagcat aaactgccca 3420 atgcttttgg tgttcagagg taccacaatg gtgccgtcac cgtgggcgct aggcgctcgt 3480 ggttccagct gtctcagggt gcggctgaca ttgcgcctac gatttcgtat gaagcgccaa 3540 gctgggctgt tcgcgaggtg gagcccatcg cggattacta cctcgctgct ctcgttgacc 3600 ctcttgaggg caagttcacc ggtttccact gggcgagctt ggcgggcctt aagcccggtg 3660 tgggccaagg acgcgatgta gcaagcgcaa gtttggctcc gtttgggctt aaccccattc 3720 gttcttcatc ggcgttggcc aatgataacg atccccacca gccgcggggg cggccggtga 3780 agcgcacggc cgcaggcaga cgagttggcc aagccataga cgctgctcgg gcgcgcacga 3840 gggcgcgctc cgagacaccc cccccccctt tgctggatga ttgcgagggt gaggatgccg 3900 gtgtcaacag caccgctacg ctgagcatgg accagggcga cgtgacccct acgcttatca 3960 cccctaacgc cggcggggat tatgttacgg ccgacggtaa ggtcgttaag caggtgagaa 4020 tcctgcaatc aggcggtaat gccacgaggc tgcgtgacgt gcggagccgt ccatcgcgaa 4080 ccgtgcgagg ccgtgttgtg ggaggcgggg gagcagccac tccagcaagg gcgcgtgtag 4140 agacaacatc tcaacagcgg gccgaaggca ttgccagtgc tctggccagt gcggtgcgca 4200 cacccctggc gactgccagg cacaccggct cagccttgcg cgaggggttg cgtgcggcgg 4260 ccaccaaggg tcaggacgca ttcctgaaca ctttgcgttc ggcagagcgg cccgaagccg 4320 gattaacgcg ggccaatcgt aaaatcgctg caggggtgat cagcgaggca cttgaggctg 4380 gctccctggg ttatgaccag ttggccgtag tgctgcaaca cctgccagcc ctgcgcaagc 4440 agttgccgtc gggtgttacc gcgcatttgc cccttccggc tcaagaggag catgaaactg 4500 tggaggtcga ggtgctatct cctaagggag tggacgaatt ggcggggcgt gaggtggagc 4560 tgactgacac tgccgcctac gaagcgcaga gcaatctgca gcaggaggcg gcagcttggt 4620 cacgccctgc catcaccccg ggtatgggtg agtcggcggg tgaggctctt cgcgaagagg 4680 gcgcgccgag attacccata ctggatgaca ccgagtcgga cagcgcgccg ttaaactaat 4740 ttggcgtgcc ccagctcgtg catttgggga agaacgcgtc cgtttattgg tcaacgtatg 4800 tcccgggttc actcgcgagg taatacgttg gttgcgagca gtagttgtca ctagacatct 4860 agctgcattt aagcctggct gcactagcag cttgattgac aaccgcgtag tgtgccacgt 4920 tcactctgga aaaacacagg ccgggcttaa tcagttagag agaaaggagt tgttttcgtt 4980 agtgcgtaag gcagtgccta gttattctgg catgaatcta gctttccagg ttgcgggcgt 5040 cacgccggca tacgctatga tggcgtggct gtaccttaca cccacgcctc ctagtgtata 5100 tactattttg cctgtgttgg ggcagttgat gacagctgtt ctgcactcag acattgcccg 5160 tacacgggag ccgggcgttc cttgtccgat tgcggatgtt tgggacatgc ggcgtaaccc 5220 ggcgacggtg cggactaaag cgaagcagtg ggccgtggcg tttactgggc gtacgtggga 5280 tggtagtctt tggaaggact tgcccggcta tcgggccatc caacctagta gttgcggctg 5340 ttacatactg tctacatctc aattggcacc agttactcat tttgtggccg aacaaggtga 5400 gagtgtgtgt gaggcgcaca cgcgggcgca cgctaagttt ctgcacccaa gcaccacttt 5460 ggacacgctg cccacggagt acttggtagg atggaatctg atattcccac ctgagcggag 5520 cagtgctgat ggaaaacagt tgcttgatgc caacgctgtc ctgtcgaatt gcagcgaatc 5580 tattcggaag gctttcagtg ataagatagt tagggaaggc gtgcccgact ggactaacat 5640 catggttggc aatgttgcat tatgtgctga gcacgatcca gccatcctag atgtcatggc 5700 aatgatacct agaggcacta gtttcttagg acatctcaag tgccttaaga aaatccacac 5760 gcatgtccgc gttactggct tgagtcttac gactggtttg agcgaggatg ccgcttacag 5820 gcgtcgtttt tatgggttag actatatgat ggggcggagt gatttttacc cgcttgattt 5880 ccttgatgaa atggtcagtc gcatggttcc cccttctaag cacgcattgc cacgtatgaa 5940 tggcaaggag ttggtgtttg ataaggagga gtacaataag ctcttcgctg ccaccgtgga 6000 taaggctttg cgggagattc tactaccaga gacgcatctc ttgagttttg aagagttgat 6060 ggagcgcagg cttaactggg tttcgtcggg ttctgcgcca ggcgttaagc tgacgcacac 6120 tgtaggagac acaactgaga aaggcggcgt taacaaacgt gtggcattta cccacctaga 6180 tactgccgca ctccgacgtg agatgcataa tcaccgcgaa gctgtgctcc atagtagaca 6240 cgccacgaag tttgaacctg gtaagaaacg ggccttgtgg aatactggtc taatgcatta 6300 tagctcgagc agtgtactac tagaacaatt tgccaacaac gagcggaaaa acgttccatg 6360 gtacatgcca agccacacga gcgcattctc aactgcgcag gatttcgtgc gcgtgcgcac 6420 tctacgcgag cgaatcggtg ttatgtggga tttctcagac tttaatatca atcatctgct 6480 cgaacatatg gcttatttgt ataagcgggc cggtgagata ttggtagaac ggaatgtatc 6540 tggcaagggc gatagtgacg tgcttgcggc tgcgaagtgg gtggcagcct cgactatgga 6600 gacctggcta gaagatgccg agtctggtgt aactgctaag gtcaagcgtt cgctgatgac 6660 aggcgtcaga ggcacttctt tcgtcaacac gattttgaac catgtgtaca ccgagatggc 6720 tcgtgaatat gcccttcgct tgggaggtgt acagttgttg aacgacccca catacgcttt 6780 cggagacgac gtattctcat cagctgacag ccacgctaaa gcagtactgt tctgccatgt 6840 gatgaacaca ctaggtacgg cggggaccac gtataaaatc aatctcgagc tgggcgagct 6900 gctgcgcgtt agctacgacg agacgggttt tagtggctat ccacttaggg ctctagtggg 6960 actggtatca ggagagtatt ttgaaggtaa tgccatcaac gacatccatc aacgcgcggc 7020 agcattccac gaacaggtac gaaagtgcgt ggcgcgagga gcaaacttgg acattgataa 7080 gtggtacaag atccttatga atcgccactg tagcctaaaa gtaaccaagg cttcaggaaa 7140 acggcttaac atcgaaccca acatccagct gatttacact ccagcggtgt ttggaggatt 7200 agggctaatc aagagtgaga tgccaaaaac gatgcgacta cacgagtgga cgtcgacggt 7260 gcggtacccc atctttgagt ttgagagggg ttttgctcag agtattgtag gcactggctt 7320 ccgcgatcgt gaactcattg tgcggttggt tcccggtgaa gagcgcaaac gactaatagg 7380 cgtggcgact aacgaggtgg gccagtccat tataggaggt aaagccccgc ctagccaagt 7440 gaaatatgca tttaggaaat acgtggacgg attcgtggct tggcgcaagg ggataactaa 7500 gggtttgccg attgatttag cccgcgatag cgagattagc atggatgttg gacgtgccga 7560 ggcactttgg tttgcggcga tgcgtggacg agatacctcg cacgtctacg attcccaaac 7620 gagtgtatcg agcatggctg gtttttccag taattcagct ttttctcaaa cattagacta 7680 tcaggtacgg gtaaacggac attccctaag ccaggccatg atagcaattg caacaaagtc 7740 tatgccagtg cacatgcgct tgcgggtctt tacactggcc actagattga gccagatccc 7800 agcgcagtac cggcgggcgt ggtttaacgg agagtttggt ttcctgccag tcgttgactg 7860 cggcagtgcc aaacttaaca gcatggtacg ttggatgacg atgtccatgg tggaatcaga 7920 cattgcccgc tacctggtag gtactaagcg ggagatagtg atacgggttg ctggactcga 7980 gcaacgcgtg cgcagatatg tgcttagcac agttagacgg atgggtatca cccatttgtc 8040 ggattaactt atatatagcc gtaagggcta ctatttaatt agagtatatg aagaaacaca 8100 aaagtgtgtg tg 8112 //