ID   JN595785; SV 1; linear; genomic DNA; STD; VRL; 1056 BP.
XX
AC   JN595785;
XX
DT   02-DEC-2011 (Rel. 111, Created)
DT   19-APR-2013 (Rel. 116, Last updated, Version 3)
XX
DE   Sri Lankan cassava mosaic virus isolate Yethapur replication-associated
DE   protein gene, complete cds.
XX
KW   .
XX
OS   Sri Lankan cassava mosaic virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-1056
RX   PUBMED; 22302313.
RA   Duraisamy R., Natesan S., Muthurajan R., Gandhi K., Lakshmanan P.,
RA   Karuppusamy N., Chokkappan M.;
RT   "Molecular Studies on the Transmission of Indian Cassava Mosaic Virus
RT   (ICMV) and Sri Lankan Cassava Mosaic Virus (SLCMV) in Cassava by Bemisia
RT   tabaci and Cloning of ICMV and SLCMV Replicase Gene from Cassava";
RL   Mol. Biotechnol. 53(2):150-158(2013).
XX
RN   [2]
RP   1-1056
RA   Raghu D., Senthil N., Raveendran M., Karthikeyan G., Pugalendhi L.,
RA   Nageswari K.;
RT   ;
RL   Submitted (19-AUG-2011) to the INSDC.
RL   Department of Plant Molecular Biology and Biotechnology, Tamil Nadu
RL   Agricultural University, Coimbatore, Coimbatore, Tamil Nadu 641003, India
XX
DR   MD5; 2154e1c1517b61b48c35e32e02e766d1.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1056
FT                   /organism="Sri Lankan cassava mosaic virus"
FT                   /host="Manihot esculenta Crantz; cultivar H226"
FT                   /isolate="Yethapur"
FT                   /mol_type="genomic DNA"
FT                   /country="India"
FT                   /collection_date="11-Oct-2010"
FT                   /PCR_primers="fwd_name: slcmvf1, fwd_seq:
FT                   atgagaaacccacgattcag, rev_name: slcmvr1, rev_seq:
FT                   ttagctgccctgtgttggacc"
FT                   /db_xref="taxon:161378"
FT   CDS             1..1056
FT                   /codon_start=1
FT                   /product="replication-associated protein"
FT                   /note="replicase"
FT                   /db_xref="GOA:G9I811"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:G9I811"
FT                   /protein_id="AEU12199.1"
FT                   /translation="MRNPRFRIQSKNIFLTYPKCSLTKEHLLEFFRSLSLPTNIKFIKI
FT                   CRELHQNGEPHLHALLQFEGKLTITNNRQFDCVHPSSSTSFHPNIQSAKSSSDVKSYID
FT                   KDGDTIEWGEFQIDGRSARGGQQSANDAYAAALNTGSKPEALRVIKELAPKDYVLQFHN
FT                   LNANLDRIFTPPPEVYVSPFSASSFDQVPDELEEWVSENVMGASARPLRPNSIVIEGDR
FT                   RTGKTIWARSLGPHNYLCGHLDLSPRVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQ
FT                   SNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEAKNNALKAWALKNATFISLSEPLY
FT                   SGANQGPTQGS"
XX
SQ   Sequence 1056 BP; 319 A; 259 C; 232 G; 246 T; 0 other;
     atgagaaacc cacgattcag aattcagtcc aaaaatatat tcctcacata ccctaagtgt        60
     tctctcacca aagaacactt actcgagttc ttccgaagct tgagtcttcc gacaaacatc       120
     aaatttatta aaatttgcag agaactccat cagaatgggg aacctcacct ccatgctctg       180
     cttcagttcg aagggaagct cacaatcaca aacaatcggc aattcgattg tgtacaccca       240
     agcagcagca ccagtttcca ccccaacata cagagcgcta agtccagctc agacgtcaag       300
     tcctacatcg acaaggatgg agacaccatc gaatggggtg agtttcagat cgatggaaga       360
     tctgcaagag ggggacagca gtcagcaaac gacgcttacg ccgcagcact taacacaggc       420
     agtaagccag aggctcttag agtcattaag gagttagcac ccaaggatta tgttttacaa       480
     tttcataatc taaatgctaa tttagatagg atttttacac ctcctcccga ggtatatgtg       540
     tctcccttct cagcctcttc atttgaccaa gttccagatg aacttgagga gtgggtgtca       600
     gagaacgtca tgggtgcctc tgcgaggcct ttgagaccta acagtatagt catcgagggc       660
     gatagacgta caggcaaaac aatatgggct aggtcattag gtccacacaa ttatctgtgt       720
     ggacatctgg acttgagtcc tagggtttac agcaatgatg catggtacaa cgtaattgat       780
     gacgtagatc cgcactatct aaagcacttt aaggaattca tgggggccca aagagactgg       840
     cagtcaaaca ccaagtacgg gaagccagtt caaattaaag ggggaattcc cactatcttc       900
     ctctgcaatc ctgggcccaa ttccagctat aaagaattcc ttgacgaggc gaagaataac       960
     gcattgaagg cttgggctct gaagaatgcg accttcatct ccctcagcga gccgctctac      1020
     tcaggtgcca atcaaggtcc aacacagggc agctaa                                1056
//