ID   JN592722; SV 1; linear; genomic DNA; STD; VRL; 1156 BP.
XX
AC   JN592722;
XX
DT   25-JAN-2012 (Rel. 111, Created)
DT   25-JAN-2012 (Rel. 111, Last updated, Version 1)
XX
DE   Squash yellow mild mottle virus isolate 07-3229 coat protein (AV1) gene,
DE   partial cds; replication enhancer protein (AC3) and transcriptional
DE   activator protein (AC2) genes, complete cds; and replication associated
DE   protein (AC1) gene, partial cds.
XX
KW   .
XX
OS   Squash yellow mild mottle virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-1156
RA   Castro R., Hammond R., Rojas M., Gilbertson R., Hernandez E., Mora F.,
RA   Ramirez P.;
RT   "Distribution and incidence of viruses transmitted by whiteflies
RT   (Hemiptera: Aleyrodidae) in vegetables of economic importance, Cartago,
RT   Costa Rica";
RL   Unpublished.
XX
RN   [2]
RP   1-1156
RA   Castro R., Moreira L., Rojas M., Gilbertson R., Hernandez E., Mora F.,
RA   Ramirez P.;
RT   "New host range of Squash yellow mild mottle virus (SYMMoV) and Pepper
RT   golden mosaic virus (PepGMV) in Costa Rica";
RL   Unpublished.
XX
RN   [3]
RP   1-1156
RA   Castro R.;
RT   ;
RL   Submitted (17-AUG-2011) to the INSDC.
RL   Centro de Investigacion en Biologia Celular y Molecular, Universidad de
RL   Costa Rica, Ciudad de la investigacion, San Pedro de Montes de Oca, San
RL   Jose 11501-2060, Costa Rica
XX
DR   MD5; 14d2f9610dd3ab08262706392e308cbb.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1156
FT                   /organism="Squash yellow mild mottle virus"
FT                   /host="Cucurbita moschata"
FT                   /isolate="07-3229"
FT                   /mol_type="genomic DNA"
FT                   /country="Costa Rica:Cartago Province"
FT                   /collection_date="2007"
FT                   /PCR_primers="fwd_name: pav1v722, fwd_seq:
FT                   atatctgcagggnaarathtggatgga, rev_name: pac1c1960, rev_seq:
FT                   tggactgcagacnggnaaracnatgtgggc"
FT                   /db_xref="taxon:1051966"
FT   gene            <1..372
FT                   /gene="AV1"
FT   CDS             <1..369
FT                   /codon_start=1
FT                   /gene="AV1"
FT                   /product="coat protein"
FT                   /db_xref="GOA:H2DFD2"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:H2DFD2"
FT                   /protein_id="AEY68343.1"
FT                   /translation="VIFWLTRDRRPYGIPMDFGQVFNMFDNEPSTATIKNDLRDRFQVL
FT                   HRFYAKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAGKYDNHTENALLLYMACTHASN
FT                   PVYATLKIRIYFYDSITN"
FT   gene            complement(366..770)
FT                   /gene="AC3"
FT   CDS             complement(366..770)
FT                   /codon_start=1
FT                   /gene="AC3"
FT                   /product="replication enhancer protein"
FT                   /db_xref="GOA:H2DFD3"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:H2DFD3"
FT                   /protein_id="AEY68346.1"
FT                   /translation="MVMDLRTWEDITVYQAENSGFIWEVPNPLYFKIYNVEDPLYTHTR
FT                   IYHIQIRFNHNLRRALNLHKAYLNFQVWTESIRASGTNYLNRFRHLVILYLDRLRFVGL
FT                   NNVIRACSWATDRSYVTGVIEDHKIKFNIY"
FT   gene            complement(511..906)
FT                   /gene="AC2"
FT   CDS             complement(511..906)
FT                   /codon_start=1
FT                   /gene="AC2"
FT                   /product="transcriptional activator protein"
FT                   /db_xref="GOA:H2DFD4"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:H2DFD4"
FT                   /protein_id="AEY68345.1"
FT                   /translation="MPNSYSSTAPSIKAQHKIAKTRAIRRRRIDLNCGCSIFLHLSCQK
FT                   NGNGFTHLGRHHCVSGGEFRFYLGSSKSPLFQDIQRGGSTLYAHQNIPHTNPVQPQPEE
FT                   STKSSQSVPKFPSMDGIDSSFWDELFK"
FT   gene            complement(848..>1156)
FT                   /gene="AC1"
FT   CDS             complement(848..>1156)
FT                   /codon_start=1
FT                   /gene="AC1"
FT                   /product="replication associated protein"
FT                   /db_xref="UniProtKB/TrEMBL:H2DFD5"
FT                   /protein_id="AEY68344.1"
FT                   /translation="RVLSNDVKYNDIDEVAPHYLKLKHWKELIGAQRDWQSNCKYGKPV
FT                   QIKGGIPSIVLCNPGEGASYKDFLDKAENASLREWTLKNAKFIFLNCPLYQSTTQDR"
XX
SQ   Sequence 1156 BP; 315 A; 248 C; 242 G; 351 T; 0 other;
     gttatcttct ggttaacacg cgaccgtcga ccatatggaa ttcctatgga tttcggccaa        60
     gtattcaaca tgttcgacaa cgagcctagt actgccacta tcaagaacga tctccgcgac       120
     cgtttccaag tacttcaccg gttctatgcg aaagttaccg gtggacaata cgctagcaac       180
     gaacaagcat tggtacggcg cttttggaag gtgaacaacc atgttgtgta caaccaccaa       240
     gaagcaggga agtatgataa ccataccgag aacgcgttgt tattgtatat ggcatgtact       300
     catgcttcta accctgtgta tgcgacattg aagattcgga tctattttta tgattcgata       360
     accaattaat aaatattgaa ctttatttta tgatcttcaa tgacaccagt tacatatgat       420
     cgatctgtcg cccacgaaca agctcgtatg acgttattta gaccaacaaa ccttaatcta       480
     tctaaataca aaataactaa atgcctaaat ctatttaaat aattcgtccc agaagctcga       540
     atcgattccg tccatacttg gaaatttagg tacgctttgt gaagatttag tgctctcctc       600
     aggttgtggt tgaaccggat ttgtatgtgg tatattctgg tgtgcgtata gagtggatcc       660
     tccacgttgt atatcttgaa atagagggga tttggaactt cccagataaa accggaattc       720
     tccgcctgat acacagtgat gtcttcccaa gtgcgtaaat ccattaccat tcttttgaca       780
     actgagatga aggaatatgg aacagccgca gttcaagtcg atgcgtcgtc gacggatagc       840
     tcttgtttta gcgatcttgt gttgtgcttt gatagagggg gcagttgagg aatatgaatt       900
     tggcattttt gagtgtccac tctctaagtg atgcattttc agctttgtcg aggaaatctt       960
     tatagctggc cccctctcca ggattgcaca gcacgattga tgggataccg cctttaattt      1020
     gaaccggctt tccatattta cagttggact gccagtccct ctgggccccg atcaattctt      1080
     tccagtgctt tagctttaaa taatgtggag caacctcatc aatgtcgtta tacttgacat      1140
     cattcgagag aaccct                                                      1156
//