ID   JN592717; SV 1; linear; genomic DNA; STD; VRL; 1168 BP.
XX
AC   JN592717;
XX
DT   25-JAN-2012 (Rel. 111, Created)
DT   25-JAN-2012 (Rel. 111, Last updated, Version 1)
XX
DE   Squash yellow mild mottle virus isolate 07-3189 coat protein (AV1) gene,
DE   partial cds; replication enhancer protein (AC3) and transcriptional
DE   activator protein (AC2) genes, complete cds; and replication associated
DE   protein (AC1) gene, partial cds.
XX
KW   .
XX
OS   Squash yellow mild mottle virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-1168
RA   Castro R., Hammond R., Rojas M., Gilbertson R., Hernandez E., Mora F.,
RA   Ramirez P.;
RT   "Distribution and incidence of viruses transmitted by whiteflies
RT   (Hemiptera: Aleyrodidae) in vegetables of economic importance, Cartago,
RT   Costa Rica";
RL   Unpublished.
XX
RN   [2]
RP   1-1168
RA   Castro R., Moreira L., Rojas M., Gilbertson R., Hernandez E., Mora F.,
RA   Ramirez P.;
RT   "New host range of Squash yellow mild mottle virus (SYMMoV) and Pepper
RT   golden mosaic virus (PepGMV) in Costa Rica";
RL   Unpublished.
XX
RN   [3]
RP   1-1168
RA   Castro R.;
RT   ;
RL   Submitted (17-AUG-2011) to the INSDC.
RL   Centro de Investigacion en Biologia Celular y Molecular, Universidad de
RL   Costa Rica, Ciudad de la investigacion, San Pedro de Montes de Oca, San
RL   Jose 11501-2060, Costa Rica
XX
DR   MD5; 2343dba9b47ad147a7bab82783e490fd.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1168
FT                   /organism="Squash yellow mild mottle virus"
FT                   /host="Capsicum annuum"
FT                   /isolate="07-3189"
FT                   /mol_type="genomic DNA"
FT                   /country="Costa Rica:Cartago Province"
FT                   /collection_date="2007"
FT                   /PCR_primers="fwd_name: pav1v722, fwd_seq:
FT                   atatctgcagggnaarathtggatgga, rev_name: pac1c1960, rev_seq:
FT                   tggactgcagacnggnaaracnatgtgggc"
FT                   /db_xref="taxon:1051966"
FT   gene            <1..372
FT                   /gene="AV1"
FT   CDS             <1..369
FT                   /codon_start=1
FT                   /gene="AV1"
FT                   /product="coat protein"
FT                   /db_xref="GOA:H2DFB2"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:H2DFB2"
FT                   /protein_id="AEY68323.1"
FT                   /translation="VIFWLTRDRRPYGIPMDFGQVFNMFDNEPSTATIKNDLRDRFQVL
FT                   HRFYAKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAGKYDNHTENALLLYMACTHASN
FT                   PVYATLKIRIYFYDSITN"
FT   gene            complement(366..770)
FT                   /gene="AC3"
FT   CDS             complement(366..770)
FT                   /codon_start=1
FT                   /gene="AC3"
FT                   /product="replication enhancer protein"
FT                   /db_xref="GOA:H2DFA9"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:H2DFA9"
FT                   /protein_id="AEY68326.1"
FT                   /translation="MVMDLRTWEDITVYQAENSVFIWEVPNPLYFKIYNVEDPLYTHTR
FT                   IYHIQIRFNHNLRRALNLHKAYLNFQVWTESIQASGTTYLNRFRHLVMLYLDRLGVVGL
FT                   NNVIRAVSWATDRSYVTGVIEDHKIKFNIY"
FT   gene            complement(511..906)
FT                   /gene="AC2"
FT   CDS             complement(511..906)
FT                   /codon_start=1
FT                   /gene="AC2"
FT                   /product="transcriptional activator protein"
FT                   /db_xref="GOA:H2DFB0"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:H2DFB0"
FT                   /protein_id="AEY68325.1"
FT                   /translation="MPNSYSSTAPSIKAQHKIAKTRAIRRRRIDLHCGCSIFLHLSCQK
FT                   NGNGFTHLGRHHCVSGGEFRFYLGSSKSPLFQDIQRGGSTLYAHQNIPHTNPVQPQPEE
FT                   STKSSQSVPKFPSMDGIDSSFWDDLFK"
FT   gene            complement(848..>1168)
FT                   /gene="AC1"
FT   CDS             complement(848..>1168)
FT                   /codon_start=1
FT                   /gene="AC1"
FT                   /product="replication associated protein"
FT                   /db_xref="UniProtKB/TrEMBL:H2DFB5"
FT                   /protein_id="AEY68324.1"
FT                   /translation="DFNSRVFSNDVKYNVIDDVAPHYLKLKHWKELIGAQRDWQSNCKY
FT                   GKPVQIKGGIPSIVLCNPGEGASYKDFLDKAENAALREWTLKNAKFIFLNCPLYQSTTQ
FT                   DR"
XX
SQ   Sequence 1168 BP; 320 A; 248 C; 249 G; 351 T; 0 other;
     gttatcttct ggttaacacg agaccgtcga ccatatggaa ttcctatgga tttcggccaa        60
     gtattcaaca tgttcgacaa cgagcctagt actgccacta tcaagaacga tctccgcgac       120
     cgtttccaag tacttcaccg gttctatgcg aaagttaccg gtggacaata cgctagcaac       180
     gaacaagcat tggtacggcg cttttggaag gtgaacaacc atgttgtgta caaccatcaa       240
     gaagcaggga agtatgataa ccataccgag aacgcgttgt tattgtatat ggcatgtact       300
     catgcctcta accctgtgta tgcgacattg aagattcgga tctattttta tgattcgata       360
     accaattaat aaatattgaa ctttatttta tgatcttcaa tgacaccagt tacatatgat       420
     cgatctgtcg cccacgaaac agctcgtatg acgttattta gaccaacaac gcctaatcta       480
     tctaaataca acataactaa atgcctaaat ctatttaaat aagtcgtccc agaagcttga       540
     atcgattccg tccatacttg gaaatttagg tacgctttgt gaagatttag tgctctcctc       600
     aggttgtggt tgaaccggat ttgtatgtgg tatattctgg tgtgcgtata gagtggatcc       660
     tccacgttgt atatcttgaa atagagggga tttggaactt cccagataaa aacggaattc       720
     tccgcctgat acacagtgat gtcttcccaa gtgcgtaaat ccattaccat tcttttgaca       780
     actgagatgg aggaatatgg aacagccgca gtgcaagtcg atgcgtcgtc gacggatagc       840
     tcttgtttta gcgatcttgt gttgtgcttt gatagagggg gcagttgagg aatatgaatt       900
     tggcattttt gagtgtccac tctctaagtg ctgcattttc agctttgtcg aggaaatctt       960
     tatagctggc cccctctcca ggattgcaca gcacgattga tgggataccg cctttaattt      1020
     gaaccggctt tccatattta cagttggact gccagtccct ctgggccccg atcaattctt      1080
     tccagtgctt tagctttaaa taatgtggag caacgtcatc aatgacgtta tacttgacgt      1140
     cattcgagaa aaccctagaa ttgaaatc                                         1168
//