ID   JN592716; SV 1; linear; genomic DNA; STD; VRL; 1173 BP.
XX
AC   JN592716;
XX
DT   25-JAN-2012 (Rel. 111, Created)
DT   25-JAN-2012 (Rel. 111, Last updated, Version 1)
XX
DE   Squash yellow mild mottle virus isolate 07-3166 coat protein (AV1) gene,
DE   partial cds; replication enhancer protein (AC3) and transcriptional
DE   activator protein (AC2) genes, complete cds; and replication associated
DE   protein (AC1) gene, partial cds.
XX
KW   .
XX
OS   Squash yellow mild mottle virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-1173
RA   Castro R., Hammond R., Rojas M., Gilbertson R., Hernandez E., Mora F.,
RA   Ramirez P.;
RT   "Distribution and incidence of viruses transmitted by whiteflies
RT   (Hemiptera: Aleyrodidae) in vegetables of economic importance, Cartago,
RT   Costa Rica";
RL   Unpublished.
XX
RN   [2]
RP   1-1173
RA   Castro R., Moreira L., Rojas M., Gilbertson R., Hernandez E., Mora F.,
RA   Ramirez P.;
RT   "New host range of Squash yellow mild mottle virus (SYMMoV) and Pepper
RT   golden mosaic virus (PepGMV) in Costa Rica";
RL   Unpublished.
XX
RN   [3]
RP   1-1173
RA   Castro R.;
RT   ;
RL   Submitted (17-AUG-2011) to the INSDC.
RL   Centro de Investigacion en Biologia Celular y Molecular, Universidad de
RL   Costa Rica, Ciudad de la investigacion, San Pedro de Montes de Oca, San
RL   Jose 11501-2060, Costa Rica
XX
DR   MD5; 7cd924ba09008c950e95b14f46eb354a.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1173
FT                   /organism="Squash yellow mild mottle virus"
FT                   /host="Solanum lycopersicum"
FT                   /isolate="07-3166"
FT                   /mol_type="genomic DNA"
FT                   /country="Costa Rica:Cartago Province"
FT                   /collection_date="2007"
FT                   /PCR_primers="fwd_name: pav1v722, fwd_seq:
FT                   atatctgcagggnaarathtggatgga, rev_name: pac1c1960, rev_seq:
FT                   tggactgcagacnggnaaracnatgtgggc"
FT                   /db_xref="taxon:1051966"
FT   gene            <1..376
FT                   /gene="AV1"
FT   CDS             <1..373
FT                   /codon_start=2
FT                   /gene="AV1"
FT                   /product="coat protein"
FT                   /db_xref="GOA:H2DFA8"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:H2DFA8"
FT                   /protein_id="AEY68319.1"
FT                   /translation="SVIFWLTRDRRPYGIPMDFGQVFNMFDNEPSTATIKNDLRDRFQV
FT                   LHRFYAKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAGKYDNHTENALLLYMACTHAS
FT                   NPVYATLKIRIYFYDSITN"
FT   gene            complement(370..774)
FT                   /gene="AC3"
FT   CDS             complement(370..774)
FT                   /codon_start=1
FT                   /gene="AC3"
FT                   /product="replication enhancer protein"
FT                   /db_xref="GOA:H2DFA9"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:H2DFA9"
FT                   /protein_id="AEY68322.1"
FT                   /translation="MVMDLRTWEDITVYQAENSVFIWEVPNPLYFKIYNVEDPLYTHTR
FT                   IYHIQIRFNHNLRRALNLHKAYLNFQVWTESIQASGTTYLNRFRHLVMLYLDRLGVVGL
FT                   NNVIRAVSWATDRSYVTGVIEDHKIKFNIY"
FT   gene            complement(515..910)
FT                   /gene="AC2"
FT   CDS             complement(515..910)
FT                   /codon_start=1
FT                   /gene="AC2"
FT                   /product="transcriptional activator protein"
FT                   /db_xref="GOA:H2DFB0"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:H2DFB0"
FT                   /protein_id="AEY68321.1"
FT                   /translation="MPNSYSSTAPSIKAQHKIAKTRAIRRRRIDLHCGCSIFLHLSCQK
FT                   NGNGFTHLGRHHCVSGGEFRFYLGSSKSPLFQDIQRGGSTLYAHQNIPHTNPVQPQPEE
FT                   STKSSQSVPKFPSMDGIDSSFWDDLFK"
FT   gene            complement(852..>1173)
FT                   /gene="AC1"
FT   CDS             complement(852..>1173)
FT                   /codon_start=2
FT                   /gene="AC1"
FT                   /product="replication associated protein"
FT                   /db_xref="UniProtKB/TrEMBL:H2DFB1"
FT                   /protein_id="AEY68320.1"
FT                   /translation="DFNSRVFSNDVKYNVIDDVAPHYLKLKHWKELIGAQRDWQSNCKY
FT                   GKPVQIKGGIPSIVLCNPGEGASYKDFLDKAENAALREWTLKNAKFIFLNCPLYQSTTQ
FT                   DR"
XX
SQ   Sequence 1173 BP; 321 A; 251 C; 250 G; 351 T; 0 other;
     cagcgttatc ttctggttaa cacgagaccg tcgaccatat ggaattccta tggatttcgg        60
     ccaagtattc aacatgttcg acaacgagcc tagtactgcc actatcaaga acgatctccg       120
     cgaccgtttc caagtacttc accggttcta tgcgaaagtt accggtggac aatacgctag       180
     caacgaacaa gcattggtac ggcgcttttg gaaggtgaac aaccatgttg tgtacaacca       240
     tcaagaagca gggaagtatg ataaccatac cgagaacgcg ttgttattgt atatggcatg       300
     tactcatgcc tctaaccctg tgtatgcgac attgaagatt cggatctatt tttatgattc       360
     gataaccaat taataaatat tgaactttat tttatgatct tcaatgacac cagttacata       420
     tgatcgatct gtcgcccacg aaacagctcg tatgacgtta tttagaccaa caacgcctaa       480
     tctatctaaa tacaacataa ctaaatgcct aaatctattt aaataagtcg tcccagaagc       540
     ttgaatcgat tccgtccata cttggaaatt taggtacgct ttgtgaagat ttagtgctct       600
     cctcaggttg tggttgaacc ggatttgtat gtggtatatt ctggtgtgcg tatagagtgg       660
     atcctccacg ttgtatatct tgaaatagag gggatttgga acttcccaga taaaaacgga       720
     attctccgcc tgatacacag tgatgtcttc ccaagtgcgt aaatccatta ccattctttt       780
     gacaactgag atggaggaat atggaacagc cgcagtgcaa gtcgatgcgt cgtcgacgga       840
     tagctcttgt tttagcgatc ttgtgttgtg ctttgataga gggggcagtt gaggaatatg       900
     aatttggcat ttttgagtgt ccactctcta agtgctgcat tttcagcttt gtcgaggaaa       960
     tctttatagc tggccccctc tccaggattg cacagcacga ttgatgggat accgccttta      1020
     atttgaaccg gctttccata tttacagttg gactgccagt ccctctgggc cccgatcaat      1080
     tctttccagt gctttagctt taaataatgt ggagcaacgt catcaatgac gttatacttg      1140
     acgtcattcg agaaaaccct agaattgaaa tcc                                   1173
//