ID   JN592715; SV 1; linear; genomic DNA; STD; VRL; 1130 BP.
XX
AC   JN592715;
XX
DT   25-JAN-2012 (Rel. 111, Created)
DT   25-JAN-2012 (Rel. 111, Last updated, Version 1)
XX
DE   Squash yellow mild mottle virus isolate 07-3162 coat protein (AV1) gene,
DE   partial cds; replication enhancer protein (AC3) and transcriptional
DE   activator protein (AC2) genes, complete cds; and replication associated
DE   protein (AC1) gene, partial cds.
XX
KW   .
XX
OS   Squash yellow mild mottle virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-1130
RA   Castro R., Hammond R., Rojas M., Gilbertson R., Hernandez E., Mora F.,
RA   Ramirez P.;
RT   "Distribution and incidence of viruses transmitted by whiteflies
RT   (Hemiptera: Aleyrodidae) in vegetables of economic importance, Cartago,
RT   Costa Rica";
RL   Unpublished.
XX
RN   [2]
RP   1-1130
RA   Castro R., Moreira L., Rojas M., Gilbertson R., Hernandez E., Mora F.,
RA   Ramirez P.;
RT   "New host range of Squash yellow mild mottle virus (SYMMoV) and Pepper
RT   golden mosaic virus (PepGMV) in Costa Rica";
RL   Unpublished.
XX
RN   [3]
RP   1-1130
RA   Castro R.;
RT   ;
RL   Submitted (17-AUG-2011) to the INSDC.
RL   Centro de Investigacion en Biologia Celular y Molecular, Universidad de
RL   Costa Rica, Ciudad de la investigacion, San Pedro de Montes de Oca, San
RL   Jose 11501-2060, Costa Rica
XX
DR   MD5; 50ffba33cb217ff63ecc52804f065f02.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1130
FT                   /organism="Squash yellow mild mottle virus"
FT                   /host="Cucurbita pepo"
FT                   /isolate="07-3162"
FT                   /mol_type="genomic DNA"
FT                   /country="Costa Rica:Cartago Province"
FT                   /collection_date="2007"
FT                   /PCR_primers="fwd_name: pav1v722, fwd_seq:
FT                   atatctgcagggnaarathtggatgga, rev_name: pac1c1960, rev_seq:
FT                   tggactgcagacnggnaaracnatgtgggc"
FT                   /db_xref="taxon:1051966"
FT   gene            <1..356
FT                   /gene="AV1"
FT   CDS             <1..353
FT                   /codon_start=3
FT                   /gene="AV1"
FT                   /product="coat protein"
FT                   /db_xref="GOA:H2DFA4"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:H2DFA4"
FT                   /protein_id="AEY68315.1"
FT                   /translation="RDRRPYGIPMDFGQVFNMFDNEPSTATIKNDLRDRFQVLHRFYAK
FT                   VTGGQYASNEQALVRRFWKVNNHVVYNHQEAGKYDNHTENALLLYMACTHASNLVSATL
FT                   KIRIYFYDSITN"
FT   gene            complement(350..754)
FT                   /gene="AC3"
FT   CDS             complement(350..754)
FT                   /codon_start=1
FT                   /gene="AC3"
FT                   /product="replication enhancer protein"
FT                   /db_xref="GOA:H2DFA5"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:H2DFA5"
FT                   /protein_id="AEY68318.1"
FT                   /translation="MVMDLRTWEDITVYQAENSVFIWEVPNPLYFKIYNVEDPLYTHTR
FT                   IYHIQIRFNHNLRRALNLHKAYLNFQVWTESIQASGTTYLNRFRHLVMLYLDRLRGIGL
FT                   NNVIRAVSWATDRSYVTGVIEDHKIKFNIY"
FT   gene            complement(495..890)
FT                   /gene="AC2"
FT   CDS             complement(495..890)
FT                   /codon_start=1
FT                   /gene="AC2"
FT                   /product="transcriptional activator protein"
FT                   /db_xref="GOA:H2DFA6"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:H2DFA6"
FT                   /protein_id="AEY68317.1"
FT                   /translation="MPNSYSSTAPSIKAQHKIAKTRAIRRRRIDLHCSCSIFLHLSCQK
FT                   NGNGFTHLGRHHCVSGGEFRFYLGSSKSPLFQDIQRGGSTLYAHQNIPHTNPVQPQPEE
FT                   STKSSQSVPKFPSMDGIDSSFWDDLFK"
FT   gene            complement(832..>1130)
FT                   /gene="AC1"
FT   CDS             complement(832..>1130)
FT                   /codon_start=3
FT                   /gene="AC1"
FT                   /product="replication associated protein"
FT                   /db_xref="UniProtKB/TrEMBL:H2DFA7"
FT                   /protein_id="AEY68316.1"
FT                   /translation="NDVKYNVIDDVAPHYLKLKHWKELIGAQRDWQSNCKYGKPVQIKG
FT                   GIPSIVLCNPGEGASYKDFLDKAENAALTEWTLKNAKFIFLNCPLYQSTTQDR"
XX
SQ   Sequence 1130 BP; 304 A; 240 C; 243 G; 343 T; 0 other;
     cacgagaccg tcgaccatat ggaattccta tggatttcgg ccaagtattc aacatgttcg        60
     acaacgagcc tagtactgcc actatcaaga acgatctccg cgaccgtttc caagtacttc       120
     accggttcta tgcgaaagtt accggtggac aatacgctag caacgaacaa gcattggtac       180
     ggcgcttttg gaaggtgaac aaccatgttg tgtacaacca tcaagaagca gggaagtatg       240
     ataaccatac cgagaacgcg ttgttattgt atatggcatg tactcatgcc tctaaccttg       300
     tgtctgcgac attgaagatt cggatttatt tttatgattc gataaccaat taataaatat       360
     tgaactttat tttatgatct tcaatgacac cagttacata tgatcgatct gtcgcccacg       420
     aaacagctcg tatgacgtta ttcagaccaa taccccttaa tctatctaaa tacaacataa       480
     ctaaatgcct aaatctattt aaataagtcg tcccagaagc ttgaatcgat tccgtccata       540
     cttggaaatt taggtacgct ttgtgaagat ttagtgctct cctcaggttg tggttgaacc       600
     ggatttgtat gtggtatatt ctggtgtgcg tatagagtgg atcctccacg ttgtatatct       660
     tgaaatagag gggatttgga acttcccaga taaaaacgga attctccgcc tgatacacag       720
     tgatgtcttc ccaagtgcgt aaatccatta ccattctttt gacaactgag atggaggaat       780
     atggaacagc tgcagtgcaa gtcgatgcgt cgtcgacgga tagctcttgt tttagcgatc       840
     ttgtgttgtg ctttgataga gggggcagtt gaggaatatg aatttggcat ttttgagtgt       900
     ccactctgta agtgctgcat tttcagcttt gtcgaggaaa tctttatagc tggccccctc       960
     tccaggattg cacagcacga ttgatgggat accgccttta atttgaaccg gctttccata      1020
     tttacagttg gactgccagt ccctctgggc cccgatcaat tctttccagt gctttagctt      1080
     taaataatgt ggagcaacgt catcaatgac gttatacttg acgtcattcg                 1130
//