ID JN591720; SV 1; linear; genomic RNA; STD; VRL; 5218 BP. XX AC JN591720; XX DT 10-OCT-2011 (Rel. 110, Created) DT 10-OCT-2011 (Rel. 110, Last updated, Version 1) XX DE Cucumber vein-clearing virus RNA-dependent RNA polymerase gene, partial DE cds; and triple gene block protein 1, triple gene block protein 2, triple DE gene block protein 3, coat protein, and nucleic acid binding protein genes, DE complete cds. XX KW . XX OS Cucumber vein-clearing virus OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus. XX RN [1] RC Publication Status: Available-Online prior to print RP 1-5218 RX PUBMED; 21956832. RA Menzel W., Abang M.M., Winter S.; RT "Characterization of cucumber vein-clearing virus, a whitefly (Bemisia RT tabaci G.)-transmitted carlavirus"; RL Arch. Virol. 156(12):2309-2311(2011). XX RN [2] RP 1-5218 RA Menzel W., Abbang M., Winter S.; RT ; RL Submitted (17-AUG-2011) to the INSDC. RL Plant Virus Department, DSMZ-German Collection of Microorganisms and Cell RL Cultures, Inhoffenstrasse 7B, Braunschweig, Lower Saxony 38124, Germany XX DR MD5; d2a408141b16e4c0c32703c1ee5da11f. XX FH Key Location/Qualifiers FH FT source 1..5218 FT /organism="Cucumber vein-clearing virus" FT /host="Citrullus lanatus" FT /lab_host="Cucumis sativus" FT /isolate="PV-0985" FT /mol_type="genomic RNA" FT /country="Tanzania" FT /collected_by="Mathew M. Abang" FT /collection_date="2009" FT /db_xref="taxon:1092564" FT CDS <1..2637 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:G5D8V5" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:G5D8V5" FT /protein_id="AEP83732.1" FT /translation="AELELPVWQIAFMQDQLGXYYQSYSISMPNFKEVMDKDSEPKKVK FT VHCILGTFGSGKSTFFRRLCAQGHGRKFDVVSPRKALLNDIAELLNFQPTHRLRKKQGQ FT ENWKLSTFETFLKRAQFLSAGQMVFIDEMQLYPPGYLDLIFSLNKVEVNWVLLGDPCQS FT GYHSDKDFPFLGNLPGNVESLLRGNTYNYNILSRRFRNSNFASRLPCSFATDSLSMQEP FT YDLREGLEQLTNLESHYQRVILVSSFEEKKIVGTYCPKANLVLTFGESTGLTFDYGTIL FT ITLIAERSSEKRWVTALSRFRKNICLINSTGYSLDSLLTSYKNRFLFYFLTGTANSQLL FT IPHLPGNPNLVEGFLPSSGKDELDASLPPMESSVPLDPSINIGRDEGVREEKLLGDPWL FT KSMIDLFQLEDIQEIEMQEVEEALVNFKIHLPREEMESTRARWVHRILAKEFREVRFGS FT IVSNQFTDDHSKQVGGMQLTNAAERFETIYPRHRANDTVTFLMAVKKRLRFSKPHIEKA FT KLNMARPFGRFMLNTFLEKVPLKPNRDLRMFEKARQDFFDKKTAKSAATIENHNMRSCR FT DWLIDMAQIFSKSQLCTKFDNRFRVAKAAQSIVCFQHSVLCRFAPYMRYIEMKLKEALP FT ERFYIHSGKGLDELNAWVIKNKFDGVCTESDYEAFDASQDQYMVAFELEIMRYLGLPND FT VLQDYEYIKTHLGSKLGSFAIMRFTGEASTFLFNTMANMLFTFLRYNLKGNESICFAGD FT DMCSSKRLSIKKDQEGFLSRIELKAKVQHTANPTFCGWHLSPYGIFKKPQLVFERMCIA FT KELNNLHNCIDNYAIEVSYAYRKGELISSRMDEEELGAYYGCVRTIIKYKHLLKSDVRL FT LFEESLD" FT CDS 2667..3356 FT /codon_start=1 FT /product="triple gene block protein 1" FT /db_xref="GOA:G5D8V6" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:G5D8V6" FT /protein_id="AEP83727.1" FT /translation="MELVLDKLLDLGYIRSSLPLREHLVVNCVPGAGKTTFIRKLLTEE FT GNFAAFTTGKPDPANVHGNWIRKWEGKLDSSKINILDEYQNLTSIPEGFHILFGDPVQS FT CNPLVLPPHLTCTETKRFGKQTCELLNSLGFQISSSLEDIVEIEDIYTGEPEGQVICCE FT REVANLLTAHNLDFLQIQDIIGATFEVVTFITSNSFPSSEKADHFRCLTRHSKRLKILC FT LNAEYLN" FT CDS 3357..3683 FT /codon_start=1 FT /product="triple gene block protein 2" FT /db_xref="GOA:G5D8V7" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:G5D8V7" FT /protein_id="AEP83728.1" FT /translation="MPLTPPKDNSAAFSILAAGIAVGLVSYCLTRYSLPIAGDHQHRFP FT FGGCYQDGNKKAAYFPHRSHSQNGFLSFGKLEAFITAIAILATLLIISRQNAHQCQFCG FT RSHN" FT CDS 3643..3864 FT /codon_start=1 FT /product="triple gene block protein 3" FT /db_xref="GOA:G5D8V8" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:G5D8V8" FT /protein_id="AEP83729.1" FT /translation="MLINVNFADVRTISGILIILISYLCLIFSILRSERACEIVLTGES FT IAISSCKLDSNFISALESLKMLNSCPTF" FT CDS 3945..4787 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:G5D8V9" FT /db_xref="InterPro:IPR000052" FT /db_xref="InterPro:IPR013569" FT /db_xref="UniProtKB/TrEMBL:G5D8V9" FT /protein_id="AEP83730.1" FT /translation="MGDAKQAANTAEEKPKSASGVPIDGIEADLQKRLDALHEFWLKMQ FT TQSVVTNPGLELGRPIPKAPAHLQKKKSSIYNKWTIDELSLLVSKPISNSMPTAEEMVK FT TRVTLEGLGVPTEQVPTVLLQVALYCKDSSSSSYMDSNGTFEWKGGSIMSDSVIAALRK FT DKNTLRRVCRLYAPLTWNYMLVHNAPPSDWQSMGFQENTKFAAFDCFDFVENPAAVQPF FT EGLIRKPTPAEKIANEAHKRIALDRSNRNETYANLGTEITGGRLGPEINRDFNNANNH" FT CDS 4787..5119 FT /codon_start=1 FT /product="nucleic acid binding protein" FT /db_xref="GOA:G5D8W0" FT /db_xref="InterPro:IPR002568" FT /db_xref="UniProtKB/TrEMBL:G5D8W0" FT /protein_id="AEP83731.1" FT /translation="MIPAINIAVCLKLVSIKINAELPFDICLLISELNVRSRLNVGTSS FT FARKRRALQLGRCHRCYRVSPKFYFTRKCDGKTCVPGIGYRRDIEILIKGVTSVIPNKS FT KFECHS" XX SQ Sequence 5218 BP; 1571 A; 942 C; 1112 G; 1591 T; 2 other; gcagagctag agctgcctgt ctggcagata gctttcatgc aggatcaact ggggtnatac 60 tatcagagtt attcaatttc catgcctaac ttcaaggagg tnatggataa agatagtgag 120 cctaagaagg tcaaagtgca ttgcatctta ggcacatttg ggtctggtaa gagcacattt 180 tttcgtaggt tgtgcgcaca aggccatggt aggaaatttg atgtagttag tcctagaaaa 240 gccctcttga atgatatagc tgaattgctc aatttccaac cgactcatcg tttaaggaag 300 aaacaaggac aagaaaattg gaagctgagc acttttgaaa cctttttaaa gagagctcaa 360 tttttgtcag ccgggcaaat ggttttcata gatgagatgc aattatatcc cccaggctat 420 ttagatctca ttttctcttt gaataaagta gaagtaaatt gggtattgtt gggtgatcct 480 tgccaaagtg gttatcatag tgataaagac tttccatttc ttggtaattt gccaggtaat 540 gttgagtctt tgctccgtgg taacacttac aattacaata tcctgagtcg tagatttaga 600 aattctaact ttgcctctag actcccttgt tcattcgcca cagattctct ctccatgcaa 660 gagccttatg atttaaggga gggtttggag cagttgacta acttagagag tcattatcaa 720 agggtgattc tggttagttc attcgaggaa aagaaaatag tgggtactta ttgtcccaaa 780 gcaaatctag tgcttacatt tggagagagc actggtttga cttttgacta cggcactatt 840 ttaataacct tgatagcaga aagatcaagt gaaaagagat gggtcaccgc tttgagtcgc 900 tttaggaaga atatttgcct aattaatagt acaggctatt cacttgatag ccttctaact 960 tcttacaaaa atagattttt gttctatttt cttactggaa ctgctaactc tcagttgttg 1020 attccccact tacccggcaa tccaaactta gttgagggct tcttacccag ctcagggaaa 1080 gatgaattag acgcctcttt gcctccaatg gaaagctcag tacctttgga tccctccatt 1140 aacattggaa gagatgaggg agttcgagaa gagaaattgc ttggtgaccc ttggttaaaa 1200 agcatgattg atctctttca attggaggac atacaggaaa tagagatgca agaggttgag 1260 gaggccttgg taaactttaa aattcatctc cccagagaag aaatggagag cactagagcc 1320 agatgggttc atcgaatctt ggctaaagaa tttagagaag ttcgctttgg aagtattgtt 1380 tcaaatcaat tcactgatga tcatagcaag caggttggag gcatgcaatt gaccaatgct 1440 gctgaacgat ttgaaacaat ttatccccga catcgggcta atgatactgt aaccttttta 1500 atggctgtta aaaaaaggtt gcgcttctcc aaacctcaca ttgagaaagc caagttaaat 1560 atggctcgcc cttttggtcg ttttatgtta aatacatttt tggaaaaagt tcctttgaag 1620 ccaaataggg acctaaggat gttcgaaaaa gctagacaag atttttttga taaaaaaaca 1680 gcgaaaagtg ctgccaccat tgagaatcat aacatgagat cttgccgcga ctggctgata 1740 gacatggctc aaattttctc gaaaagtcaa ttatgtacca aatttgacaa tcgttttaga 1800 gtagctaaag cggctcagag cattgtttgt tttcaacact cagttttatg ccgctttgct 1860 ccatacatga ggtacataga aatgaaatta aaagaagctc ttccagagcg gttttacatt 1920 cattccggca aaggactgga tgagttgaat gcctgggtaa ttaagaacaa atttgatgga 1980 gtctgcacag aatctgatta tgaggccttt gatgcttccc aggatcaata tatggtggct 2040 tttgagttgg agattatgag gtatttgggt cttcccaatg acgttcttca agattatgaa 2100 tacatcaaga cccacctagg ttccaaattg ggctcttttg ccattatgcg ttttaccggc 2160 gaggctagta cctttttatt caatacaatg gcgaatatgc tttttacctt cttaaggtac 2220 aatttaaagg ggaatgaaag tatttgtttt gccggtgatg atatgtgttc ctctaaacgc 2280 ttatcaatca agaaggatca agaaggtttt ttatccagga ttgagttgaa agcaaaggtg 2340 cagcatacag ctaatccaac attttgtggt tggcacctta gcccttatgg gatatttaaa 2400 aaacctcaat tggtctttga aaggatgtgt atagcaaaag agctgaataa tctccataat 2460 tgcattgaca attatgctat tgaggtctcc tatgcctaca gaaaaggtga attgataagc 2520 tccagaatgg atgaagagga acttggggct tattatggct gcgtcagaac aatcataaag 2580 tataagcatc tcttgaaatc tgacgtgcgg ctgttgtttg aggaatcttt agattgacct 2640 taggttagtt agtttttaga ttgaatatgg aactagtttt agataaactt ttagatctag 2700 gatatattag aagttcttta ccactacgag aacatctggt tgtcaattgt gtaccaggag 2760 ctggcaaaac aaccttcatt agaaaactcc taactgaaga aggaaatttt gctgcattta 2820 ccactggcaa acctgacccc gctaatgtac atggcaattg gattcgaaag tgggaaggaa 2880 aattagatag tagtaaaatt aatatcttgg atgagtacca gaatttgacc tctattccag 2940 aaggctttca cattttattt ggggatccag ttcagagttg taatccatta gtgttgcccc 3000 ctcatttaac gtgcactgaa accaaaagat ttggcaagca aacttgtgag ttactcaact 3060 cattgggctt tcaaatctca tcttcattgg aggacattgt ggaaattgag gacatataca 3120 caggagaacc agaaggccaa gttatctgct gtgaaagaga ggtagctaat ttgttgactg 3180 cacacaactt ggatttcctt caaattcaag atataattgg agctaccttc gaagtggtca 3240 ctttcatcac atctaattct tttccaagtt cagaaaaggc tgaccatttc cgctgcttaa 3300 ccaggcattc caaaagactt aaaatacttt gccttaatgc agagtactta aattaaatgc 3360 ctcttactcc cccaaaagac aacagtgctg ccttctcaat tttggcagcg ggtatagctg 3420 taggcttagt gagttactgt ttgaccagat actcacttcc tatcgctggt gatcatcaac 3480 atcgctttcc tttcgggggt tgttatcaag acggtaataa gaaagcagct tattttcctc 3540 atcgaagcca ttcccaaaac ggttttctga gttttgggaa actagaagcc ttcataactg 3600 ctatcgcaat tctggctact ttattaataa ttagtaggca aaatgctcat caatgtcaat 3660 tttgcggacg ttcgcacaat tagtggtatt ttaataattt taataagtta tttgtgtttg 3720 atctttagca tacttagaag tgaaagggcc tgtgaaatcg ttctaactgg ggaatccata 3780 gcaatatcaa gttgcaaact tgactcaaac ttcattagcg ctttggagtc cttaaaaatg 3840 ctcaactctt gccccacttt ttaaaagaag tcgttcttgt gtgtccttta ggttcatagg 3900 gtctagctcg attagattag tacctgtgat ttcaagttgc aaatatgggt gatgcaaagc 3960 aagctgccaa tacagctgag gaaaaaccca agagtgcttc aggcgtgccc attgatggga 4020 tcgaggctga tttgcaaaaa agattagatg ccctccatga attttggctg aaaatgcaaa 4080 cccagtctgt agtcaccaac cctggtttgg aattgggtag acctatccca aaagctccgg 4140 ctcatcttca gaaaaagaaa tcaagtatct acaataaatg gactatagat gagttgagtt 4200 tgttggtttc aaaacctatt tccaatagta tgcctaccgc tgaagaaatg gttaaaacta 4260 gggtaacctt agagggtttg ggagtcccaa ccgagcaagt accaactgtt cttttgcaag 4320 tggccctgta ctgcaaagac tctagctcat caagctacat ggattctaat gggacttttg 4380 agtggaaagg aggctctatt atgtctgact cagttatcgc cgccttaagg aaggataaga 4440 atactttaag gagagtttgt cgtttgtatg ctcctcttac ttggaattac atgcttgtgc 4500 ataatgctcc tccttctgat tggcaatcca tgggttttca agagaacacg aaatttgctg 4560 cctttgactg ctttgacttt gttgaaaatc cggcagctgt gcaaccattt gagggtctga 4620 ttagaaaacc aactcctgct gagaagatag ctaatgaggc ccacaagcgc attgcattag 4680 accgctcaaa tagaaatgaa acttatgcaa atctgggtac tgaaataact ggaggtaggc 4740 tggggcctga aatcaataga gactttaata acgcaaataa tcattaatga ttccagctat 4800 taatatagca gtgtgtttaa agttagtgtc tattaaaata aatgcagagt tgccttttga 4860 catctgcctc ttaatatctg aattaaatgt tagaagtcga ttaaatgtgg gtacttcttc 4920 ctttgctagg aagcgtaggg ctcttcaact ggggagatgc cataggtgct atcgagtcag 4980 tcctaagttt tactttacaa gaaaatgtga tggtaaaacc tgtgtaccag gtatagggta 5040 cagacgggac attgaaatat tgattaaggg agtaacttcg gtgataccca ataaatcaaa 5100 atttgaatgc cactcttgaa ccatggaaag agtataaaga gtccatgtta gccatcacta 5160 tacctaaata atgagtgttg gtgaattaaa tactgttttt aataatattt ttcaggtt 5218 //