ID JN591385; SV 1; circular; genomic DNA; STD; VRL; 2773 BP. XX AC JN591385; XX DT 23-JAN-2012 (Rel. 111, Created) DT 06-NOV-2014 (Rel. 122, Last updated, Version 2) XX DE Tomato leaf curl Sudan virus isolate Mir1, complete genome. XX KW . XX OS Tomato leaf curl Sudan virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2773 RX DOI; .1094/PDIS-02-13-0210-RE. RX PUBMED; 30708466. RA Khan A.J., Akhtar S., Singh A.K., Briddon R.W.; RT "A Distinct Strain of Tomato leaf curl Sudan virus Causes Tomato Leaf Curl RT Disease in Oman"; RL Plant Dis. 97(11):1396-1402(2013). XX RN [2] RP 1-2773 RA Khan A.J., Haq Q.M.I., Al-Matroushi A.M.O., Al-Zaidi A.M.I.; RT "Molecular characterization and infectivity of Tomato leaf curl Sudan virus RT from Oman"; RL Unpublished. XX RN [3] RP 1-2773 RA Khan A.J., Haq Q.M.I., Al-Matroushi A.M.O., Al-Zaidi A.M.I.; RT ; RL Submitted (17-AUG-2011) to the INSDC. RL Department of Crop Sciences, College of Agricultural and Marine Sciences, RL Sultan Qaboos University, P.O. Box-34, Al-Khod 123 Muscat, Sultanate of RL Oman XX DR MD5; 4403729a63d2a88c9d54c6f0fa9e2ff0. DR EuropePMC; PMC5796946; 29430354. XX FH Key Location/Qualifiers FH FT source 1..2773 FT /organism="Tomato leaf curl Sudan virus" FT /host="tomato" FT /isolate="Mir1" FT /mol_type="genomic DNA" FT /country="Oman" FT /collection_date="01-Apr-2011" FT /db_xref="taxon:270146" FT gene 136..486 FT /gene="V2" FT CDS 136..486 FT /codon_start=1 FT /gene="V2" FT /product="pre-coat protein" FT /note="movement" FT /db_xref="GOA:H2DF13" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:H2DF13" FT /protein_id="AEX92960.1" FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQAVEQTYEPNTLGHDLIRDL FT ISVIRARDYVEASRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQASIMDVQAHV FT PKAQNIQNVSNS" FT gene 296..1030 FT /gene="V1" FT CDS 296..1030 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /note="involved in encapsidation of viral genome" FT /db_xref="GOA:H2DF14" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:H2DF14" FT /protein_id="AEX92961.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAAPIVQGTNKRRSW FT MYRPMYRKPRIYRMYRTPDVPRGCEGPCKVQSFDKRHDLKHTGEVLCVSDVTRGNGLTH FT RVGKRFCIKSIYIVGKVWMDENIKVKNHTNTCMFWLVRDRRPVTTPYGFGELFNMYDNE FT PSTATIKNDLRDRCQVLKRFTASLSGGQYASKEQCVIRRFYKIYNHIVYNHQEQGKYEN FT HTENALLLYMACTHASNPVYVH" FT gene complement(1126..1470) FT /gene="C3" FT CDS complement(1126..1470) FT /codon_start=1 FT /gene="C3" FT /product="replication enhancer" FT /db_xref="GOA:H2DF15" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H2DF15" FT /protein_id="AEX92956.1" FT /translation="MDSRTGELITAHQATNGVFIWEINNPLYFKITSHDERPLNMNKDI FT ISIQIRFNHNIRKELGIHKCFLNFRIWTTLRPQTGHFLRVFKYQVLRYLDNIGVISINN FT VIRAVDHVFV" FT gene complement(1211..1618) FT /gene="C2" FT CDS complement(1211..1618) FT /codon_start=1 FT /gene="C2" FT /product="transactivation protein" FT /db_xref="GOA:H2DF16" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H2DF16" FT /protein_id="AEX92957.1" FT /translation="MQPSSPSTSHCSQIPIKVQHKLAKKKPVRRRRLDLDCGCSYYIHI FT NCINHGFTHRGTHHCSSGNEWRFYLGDKQSPLFQDHQPRREATQHEQRHNFNTNPIQSQ FT HQEGVGDSQMFSQLPNLDDLTASDWSFLKSI" FT gene complement(1527..2663) FT /gene="C1" FT CDS complement(1527..2663) FT /codon_start=1 FT /gene="C1" FT /product="replication-associated protein" FT /note="rep" FT /db_xref="GOA:H2DF17" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H2DF17" FT /protein_id="AEX92958.1" FT /translation="MYRYQGINEICGQSVLIDHMAPPKRFQIYCKNYFLTYPHCSLSLP FT EALSQIKNLDTPVNKKYIKICRELHENGEPHLHVLMQFEGKFKCTNNRFFDLVSTTRSA FT HFHPNIQGAKSSSDVKSYIDKDGDTVEWGEFQIDGRSARGGQQSANDAYAQALNTGSKS FT EALNVIKELAPKDFVLQFHNLNSNLDRIFQEPPAPYISPFLSSSFNQVPEELEVWVSEN FT VMSAAARPWRPNSIVIEGDSRTGKTMWARSLAPHNYLCGHLDLSPKVYSNDAWYNVIDD FT VDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPASSYKEYLDEEKNI FT SLKNWALKNATFVTLNEPLFSNTNQSPTQASQEETRPT" FT gene complement(2159..2449) FT /gene="C4" FT CDS complement(2159..2449) FT /codon_start=1 FT /gene="C4" FT /product="unknown" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:H2DF24" FT /protein_id="AEX92959.1" FT /translation="MGNHISMCLCSSRANSSAQITDSSTWSPQPGQHISIRTFRELNPA FT PTSSPTSTRTETPSNGVSFRSTEDLQEGDSNQPMTLTPKRLTLEVSRRLLM" XX SQ Sequence 2773 BP; 730 A; 549 C; 620 G; 874 T; 0 other; accggatggc cgcgcccctc ttttttggtg ggccccacac acgtcgctat caaccaatca 60 aattttagcc tggaacgtta gataactgtc ctgttgtctt tatatacttg gtccccaagt 120 tgtttgtctt ccaaaatgtg ggaccctctt ttgaatgaat ttccggaatc tgttcacgga 180 tttcgttgta tgctagccat aaaatatttg caggccgttg agcaaacata cgagcccaat 240 actttgggcc acgatttaat tagggatctt atttctgtta taagggcccg tgactatgtc 300 gaagcgtccc ggcgatataa tcatttccac gcccgtctcg aaggttcgcc gaaggctgaa 360 cttcgacagc ccatacagca gccgtgctgc tgcccccatt gtccaaggca caaacaagcg 420 tcgatcatgg atgtacaggc ccatgtaccg aaagcccaga atatacagaa tgtatcgaac 480 tcctgatgtt cctcgtggat gtgaaggccc atgtaaggtc caatcgtttg acaagcgcca 540 tgatttgaag catacgggtg aggtattgtg tgtttcagat gtaacacgtg gtaatggcct 600 tactcatcgt gttgggaaac gtttttgtat caagtctatt tacattgttg gcaaagtgtg 660 gatggatgag aacattaagg tgaagaatca tactaacact tgtatgttct ggcttgttcg 720 ggatcgtcgt ccagttacta cgccttatgg atttggagaa ttgtttaaca tgtatgataa 780 tgagccatct actgccacta ttaagaatga tctgcgggat cgttgtcagg ttcttaagag 840 gtttactgct agcctgagtg gtggtcaata cgcgtccaaa gagcaatgtg tcattaggcg 900 attttataag atttataacc atattgttta taatcatcaa gagcagggga aatatgagaa 960 tcatactgag aacgctctat tattgtatat ggcatgtact catgcttcta atccagtgta 1020 tgtacactga aaataagggt gtacttctac gattcaatat cgaattaata aaatttatat 1080 tttatatcat gatgttctgt tacatctgtt gtctttgcaa ttacattata caaatacatg 1140 atcaactgct ctaattacat tgttaatgga aattacacca atattatcta aatatcgaag 1200 aacttgatat ttaaatactc ttaagaaatg accagtctga ggccgtaagg tcgtccagat 1260 tcggaagttg agaaaacatt tgtgaatccc caactccttc ctgatgttgt gattgaatcg 1320 gatttgtatt gaaattatgt ctttgttcat gttgagtggc ctctcgtcgt ggctggtgat 1380 cttgaaatag aggggattgt ttatctccca gataaaaacg ccattcgttg cctgatgagc 1440 agtgatgagt tcccctgtgc gtgaatccat gattgatgca gttgatgtgg atatagtatg 1500 agcagccgca gtctaggtcc agtcgcctac gtcggacggg tttcttcttg gctagcttgt 1560 gttggacttt gattggtatt tgagaacagt ggctcgttga gggtgacgaa ggttgcattc 1620 ttgagagccc aatttttcag agatatattt ttctcctcat ctagatattc tttataagat 1680 gatgctggtc ctggattaca gaggaagata gtgggaattc cgcctttaat ttgaatgggc 1740 ttcccgtact ttgtattgct ttgccagtcc ctctgggccc ccatgaattc tttaaagtgc 1800 tttaaataat gcgggtctac gtcatcaatg acattgtacc acgcatcatt actgtacacc 1860 tttggactca ggtctagatg tccacacaaa taattgtgtg gggctagaga cctggcccac 1920 attgttttgc cggtcctgct atcaccctcg atgacaatac tgttaggtct ccatggccgc 1980 gcagcggcag acatgacgtt ctcggacacc cagacttcaa gttcctcagg aacttgatta 2040 aaagaagaag ataaaaaagg agaaatataa ggagccggtg gctcctgaaa aatcctatct 2100 aaattactat ttaaattatg aaattgcaaa acaaaatctt taggagctaa ttctttaatt 2160 acattaagag cctccgactt acttccagtg ttaagcgctt gggcgtaagc gtcattggct 2220 gattgctgtc cccctcttgc agatcttccg tcgatctgaa actcacccca ttcgacggtg 2280 tctccgtcct tgtcgatgta ggacttgacg tcggagctgg atttagctcc ctgaatgttc 2340 ggatggaaat gtgctgacct ggttgtggag accaggtcga agaatctgtt atttgtgcac 2400 ttgaatttgc cctcgaactg cataagcaca tggagatgtg gttccccatt ctcgtgtagc 2460 tctctgcaga ttttgatgta ttttttattt actggggtat ctaggttttt tatttgggaa 2520 agtgcttctg gtaaagaaag agagcaatgt ggatatgtga gaaaataatt tttgcaatat 2580 atttggaaac gcttaggagg agccatatgg tcaatgagta ccgattgacc acagatttca 2640 tttatcccct ggtaccggta catcggtact caatatatag tgagtaccaa atggcattct 2700 tgtaatttgg gattgtcttt tgaattttaa aattcaaaat tgaaattccc atagcggcca 2760 tccgtataat att 2773 //