ID JN587811; SV 1; circular; genomic DNA; STD; VRL; 2737 BP. XX AC JN587811; XX DT 16-JAN-2012 (Rel. 111, Created) DT 16-JAN-2012 (Rel. 111, Last updated, Version 1) XX DE Squash leaf curl China virus isolate SLCCNV-[Pum:IARI] segment DNA-A, DE complete sequence. XX KW . XX OS Squash leaf curl China virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2737 RA Phaneendra C., Mandal B., Rao K.R.S.S., Jain R.K.; RT ; RL Submitted (16-AUG-2011) to the INSDC. RL Plant Pathology, Indian Agricultural Research Institute, Pusa Campus, New RL Delhi, Delhi 110012, India XX DR MD5; a1fe32abbf89f7a36a0e82861601c394. XX FH Key Location/Qualifiers FH FT source 1..2737 FT /organism="Squash leaf curl China virus" FT /segment="DNA-A" FT /host="pumpkin" FT /isolate="SLCCNV-[Pum:IARI]" FT /mol_type="genomic DNA" FT /country="India" FT /isolation_source="plant showing yellow vein mosaic FT symptoms in the experimental field of IARI" FT /collection_date="Jun-2010" FT /db_xref="taxon:223323" FT CDS 121..459 FT /codon_start=1 FT /product="pre-coat protein" FT /note="AV2" FT /db_xref="GOA:H2DEN9" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:H2DEN9" FT /protein_id="AEX55201.1" FT /translation="MWDPLLHEFPESVHGLRCMLAVKYLQEIEKNYSPDTVGYDLVRDL FT ILVLRAKNYGEATSRYHHFNPPIEGTPTSQLRQPLWSSCRCPHCPRHKSKGMDQQADEQ FT KTQNVQNV" FT CDS 281..1051 FT /codon_start=1 FT /product="coat protein" FT /note="AV1" FT /db_xref="GOA:H2DEP0" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:H2DEP0" FT /protein_id="AEX55200.1" FT /translation="MAKRPADIIISTPPSKVRRRLNFDSPYGARAVVPIARVTKAKAWT FT NRPMNRKPRMYRMYRSPDLPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHR FT IGKRFCVKSVYVLGKIWMDEKIKTKNHTNSVMFFLVRDRRPTGSPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGTYASKEQALVRKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYLYDSVTN" FT CDS complement(311..796) FT /codon_start=1 FT /product="AC5" FT /db_xref="InterPro:IPR006892" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:H2DEP1" FT /protein_id="AEX55205.1" FT /translation="MHILHCCCARFIVEHVKNFAKILGRSCRTTITNQKKHDTVSMVFS FT LDFFVHPYLPQHIDGFHTESLPYAMCESGSSCNVTNTHDLANMRDIVPRFKGLHLTRAF FT TAPWQVGTSIHSVHSGFSVHRPVGPCLCFCDAGNGDNGTSSIGAVEVETSAYLRWGG" FT CDS complement(1041..1457) FT /codon_start=1 FT /product="replication enhancer protein" FT /note="AC3" FT /db_xref="GOA:H2DEP2" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H2DEP2" FT /protein_id="AEX55204.1" FT /translation="MITDSRTGEYITADRAEDGVYIWEVPNPLYFKITKHDIRPCLTEH FT DIIKVQIMFNHNLRKALGLHKCVLMFQIWTGLRPPIGIFLRVFKTQVLKYLDMLGVIGI FT NNVIRAVYHVLDSVLEKTIDVWTTYDIKLNIFNL" FT CDS complement(1192..1596) FT /codon_start=1 FT /product="transcription activator protein" FT /note="AC2" FT /db_xref="GOA:H2DEP3" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H2DEP3" FT /protein_id="AEX55203.1" FT /translation="MQSSSQSKNHSIPVAKESLHPRKKKNIRRRRIDLPCGCSYYMSID FT CHDHGFTHRGIHHCGSSRGWRVYLGSSKSPIFQNNKTRYQTVPNRTRHNQSADNVQPQP FT AESTGASQMCSNVPNLDGLTPSDWDFLESL" FT CDS complement(1499..2584) FT /codon_start=1 FT /product="replication initiation protein" FT /note="AC1" FT /db_xref="GOA:H2DEP4" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H2DEP4" FT /protein_id="AEX55202.1" FT /translation="MAPPRHFKVNAKNYFLTYPKCSLTKEEALSQLQTLETPTAKKFIK FT ICRELHEDGSPHIHVLIQFKGKFQCKNNRFFDLVSPSRSAHFHPNIQGAKSASDVKAYI FT DKDGDVLEWGVFQIDGRSARGGQQTANDAYAKAINTGNKEDALKVLKELAPKDYVLQFH FT NMNSNLDRIFQPRSEVYVSPFSISSFDRVPQELVDWVSSNVVCSAARPIRPISIVIEGD FT SRTGKTAWARSLGPHNYLCGHLDLSPRVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVMIKGGIPTIFLCNKGPNSSYKEYLDEEKNAALKQWAIKNAIFITIEEPL FT YSGRERIASSEEEEEHQTQTN" XX SQ Sequence 2737 BP; 738 A; 595 C; 597 G; 807 T; 0 other; accgaatggc cgcgcgattt ttttatgtgg gccctcaacc aatgaaattc acgctacatg 60 gcttatttag tgcgtgggga ccaataaata gacttgctca ccaagtttgg atctacaaac 120 atgtgggatc cattattgca cgaatttcct gaaagcgttc atggtctaag gtgcatgcta 180 gctgtaaaat atctccaaga gatagagaag aactattccc cagacacagt cggttacgat 240 cttgtccgag atctcatcct tgttctccga gcaaagaact atggcgaagc gaccagcaga 300 tatcatcatt tcaacccccc catcgaaggt acgccgacgt ctcaacttcg acagccccta 360 tggagctcgt gccgttgtcc ccattgcccg cgtcacaaaa gcaaaggcat ggaccaacag 420 gccgatgaac agaaaaccca gaatgtacag aatgtataga agtcccgact tgccaagggg 480 ctgtgaaggc ccttgtaagg tgcagtcctt tgaatctagg cacgatgtct ctcatattgg 540 caaggtcatg tgtgttagtg acgttacacg aggaaccgga ctcacacatc gcatagggaa 600 gcgattctgt gtgaaatccg tctatgtgtt ggggaagata tggatggacg aaaaaatcaa 660 gactaaaaac catactaaca gtgtcatgtt ttttttggtt cgtgatcgtc gtcctacagg 720 atctccccaa gattttggcg aagtttttaa catgttcgac aatgaaccga gcacagcaac 780 agtgaagaat atgcatcgtg atcgttatca agtcttacgg aagtggcatg cgactgtgac 840 gggaggaaca tatgcatcta aggagcaagc attagttagg aagtttgtta gggttaataa 900 ttatgttgtt tataatcaac aagaggccgg caagtatgag aatcatactg aaaacgcatt 960 aatgttgtat atggcctgta ctcacgcatc aaatcctgta tatgctactt tgaaaatccg 1020 gatctacctt tatgattcgg tcacaaatta aatatattca attttatatc atatgttgtc 1080 catacatcaa ttgtcttttc caatacacta tccaatacat gataaactgc tcttattaca 1140 ttattaatac caatcacccc caacatatcc aggtacttaa ggacctgggt cttaaagact 1200 ctcaagaaaa tcccaatcgg agggcgtaag cccgtccaga tttggaacat tagaacacat 1260 ttgtgaagcc ccagtgcttt ccgcaggttg tggttgaaca ttatctgcac tttgattatg 1320 tcgtgttctg ttaggcacgg tctgatatcg tgttttgtta ttttgaaata taggggattt 1380 ggaacttccc agatatacac gccatcctct gctcgatccg cagtgatgta ttcccctgtg 1440 cgtgaatccg tgatcatggc aatctattga catgtaatac gagcatccgc acggtagatc 1500 aattcgtctg cgtctgatgt tcttcttctt cctcggatga agcgattctt tcgcgaccgg 1560 aatagagtgg ttcttcgatt gtgatgaaga ttgcattctt gattgcccac tgcttcagtg 1620 ctgcattttt ttcttcgtcc agatattcct tatagctgct gtttggacct ttattgcaca 1680 ggaagatagt gggaattcca cctttaatca tgactggctt tccgtacttc gtgttgcttt 1740 gccagtctct ttgggccccc atgaattctt taaagtgctt tagatagtgg ggatcaacgt 1800 catcaatgac gttgtaccag gcatcattat tgtacactct cgggcttaga tctaggtggc 1860 cgcacagata attgtgcggt cccaaagaac gcgcccacgc agttttgccc gttctactat 1920 ccccctctat gactatactt atgggtctaa tcggccgcgc agcggaacat accacgttac 1980 ttgaaaccca atcgacgagt tcttgcggaa ctctgtcgaa ggatgaaatt gaaaatggag 2040 aaacgtaaac ctcagaacga ggttgaaaaa tgcgatctaa attggaattc atattgtgaa 2100 actgcagaac ataatccttt ggggctaatt cctttaatac tttcaatgca tcttctttat 2160 tccccgtgtt aatcgcctta gcatatgcgt cgttggccgt ctgctgacca ccacgagcag 2220 atcgtccatc gatctggaaa acaccccatt ctagaacgtc tccgtctttg tcgatgtatg 2280 ctttgacatc tgacgctgat ttagctccct gaatgttcgg atggaaatgt gctgaccgac 2340 ttggggaaac caagtcgaag aatctgttat tcttgcactg gaatttccct ttgaattgga 2400 tgagaacatg gatatgcgga gacccatcct cgtgaagctc tctacagatc ttgatgaatt 2460 tcttcgcagt tggggtttct agggtttgca attgggaaag tgcctcttct ttagttagag 2520 agcactttgg atatgtgagg aaatagtttt tcgcatttac tttgaaatgc ctaggaggag 2580 ccatcaaaac gcgcgttttg attcggggtc tctccaaaac tatggtatat tggtgtatgg 2640 agtctcatat atactttgga caccaaatgg caaaatggta attatgcaaa taattacttt 2700 aattcaaaat gactaaagcg gccattcgta taatatt 2737 //