ID   JN573299; SV 1; linear; genomic DNA; STD; VRL; 1104 BP.
XX
AC   JN573299;
XX
DT   02-JAN-2012 (Rel. 111, Created)
DT   02-JAN-2012 (Rel. 111, Last updated, Version 1)
XX
DE   Squash yellow mild mottle virus isolate 07-3185 coat protein (AV1) gene,
DE   partial cds; replication enhancer protein (AC3) and transcriptional
DE   activator protein (AC2) genes, complete cds; and replication associated
DE   protein (AC1) gene, partial cds.
XX
KW   .
XX
OS   Squash yellow mild mottle virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-1104
RA   Castro R., Hammond R., Rojas M., Gilbertson R., Hernandez E., Mora F.,
RA   Ramirez P.;
RT   "Distribution and incidence of viruses transmitted by whiteflies
RT   (Hemiptera: Aleyrodidae) in vegetables of economic importance, Cartago,
RT   Costa Rica";
RL   Unpublished.
XX
RN   [2]
RP   1-1104
RA   Castro R., Moreira L., Rojas M., Gilbertson R., Hernandez E., Mora F.,
RA   Ramirez P.;
RT   "New host range of Squash yellow mild mottle virus (SYMMoV) and Pepper
RT   golden mosaic virus (PepGMV) in Costa Rica";
RL   Unpublished.
XX
RN   [3]
RP   1-1104
RA   Castro R.;
RT   ;
RL   Submitted (11-AUG-2011) to the INSDC.
RL   Centro de Investigacion en Biologia Celular y Molecular, Universidad de
RL   Costa Rica, Ciudad de la Investigacion, San Pedro de Montes de Oca, San
RL   Jose 11501-2060, Costa Rica
XX
DR   MD5; 9fcc2c7eb3e21638d67ee145d805a32f.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1104
FT                   /organism="Squash yellow mild mottle virus"
FT                   /host="Cucurbita moschata"
FT                   /isolate="07-3185"
FT                   /mol_type="genomic DNA"
FT                   /country="Costa Rica:Cartago Province"
FT                   /collection_date="2007"
FT                   /PCR_primers="fwd_name: pav1v722, fwd_seq:
FT                   atatctgcagggnaarathtggatgga, rev_name: pac1c1960, rev_seq:
FT                   tggactgcagacnggnaaracnatgtgggc"
FT                   /db_xref="taxon:1051966"
FT   gene            <1..375
FT                   /gene="AV1"
FT   CDS             <1..375
FT                   /codon_start=1
FT                   /gene="AV1"
FT                   /product="coat protein"
FT                   /db_xref="GOA:G9I607"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:G9I607"
FT                   /protein_id="AEW69667.1"
FT                   /translation="SVILSWLTRDRRPYGIPMDFGQVFNMFDNEPSTATIKNDLRDRFQ
FT                   VLHRFYAKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAGKYDNHTENALLLYMACTHA
FT                   SNPVYATLKIRIYFYDSITN"
FT   gene            complement(372..776)
FT                   /gene="AC3"
FT   CDS             complement(372..776)
FT                   /codon_start=1
FT                   /gene="AC3"
FT                   /product="replication enhancer protein"
FT                   /db_xref="GOA:G9I608"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:G9I608"
FT                   /protein_id="AEW69670.1"
FT                   /translation="MVMDLRTWEDITVYQAENSGFIWEVPNPLYFKIYNGEDPLFTHTR
FT                   IYHIQIRFNHNLRRALNLHKAYLNFQVWTESIRASGTTYLNRFRHLVMLYLDRLGVVGL
FT                   NNVIRAVSWATDRSYVTGVIEDHKIKFNIY"
FT   gene            complement(517..912)
FT                   /gene="AC2"
FT   CDS             complement(517..912)
FT                   /codon_start=1
FT                   /gene="AC2"
FT                   /product="transcriptional activator protein"
FT                   /db_xref="GOA:G9I609"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:G9I609"
FT                   /protein_id="AEW69669.1"
FT                   /translation="MPNSYSSTAPSIKAQHKIAKTRAIRRRRIDLNCGCSIFLHLSCQK
FT                   NGNGFTHLGRHHCVSGGEFRFYLGSSKSPLFQDIQRGGSTLYAHQNIPHTNPVQPQPEE
FT                   STKSSQSVPKFPSMDGIDSSFWDDLFK"
FT   gene            complement(854..>1104)
FT                   /gene="AC1"
FT   CDS             complement(854..>1104)
FT                   /codon_start=3
FT                   /gene="AC1"
FT                   /product="replication associated protein"
FT                   /db_xref="UniProtKB/TrEMBL:G9I610"
FT                   /protein_id="AEW69668.1"
FT                   /translation="KLKHWKELIGAQMDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASY
FT                   KDFLDKAENAALREWTLKNAKFIFLNCPLYQSTTQDR"
XX
SQ   Sequence 1104 BP; 296 A; 239 C; 236 G; 333 T; 0 other;
     agcgttatcc tttcctggtt aacacgagac cgtcgaccat atggaatccc tatggatttc        60
     ggccaagtat tcaacatgtt cgacaacgag cctagtactg ctactatcaa gaacgatctc       120
     cgcgaccgtt tccaagtact tcaccggttc tatgcgaaag taaccggtgg acaatacgct       180
     agcaacgaac aagcattggt acggcgcttt tggaaggtga acaaccatgt tgtgtacaac       240
     caccaagaag cagggaagta tgataatcat accgagaacg cgttgttatt gtatatggca       300
     tgtactcatg cctctaaccc tgtgtatgcg acattgaaga ttcggatata tttttatgat       360
     tcgataacca attaataaat attgaacttt attttgtgat cttcaatgac accagttaca       420
     tatgatcgat ctgtcgccca cgaaacagct cgtatgacgt tatttagacc aacaacgcct       480
     aatctatcta aatacaacat aactaaatgc ctaaatctat ttaaataagt cgtcccagaa       540
     gctcgaatcg attccgtcca tacttggaaa tttaggtacg ctttgtgaag atttagtgct       600
     ctcctcaggt tgtggttgaa ccggatttgt atgtggtata ttctggtgtg cgtaaagagt       660
     ggatcctccc cgttgtatat cttgaaatag aggggatttg gaacttccca gataaaaccg       720
     gaattctccg cctgatacac agtgatgtct tcccaagtgc gtaaatccat taccattctt       780
     ttgacaactg agatggagga atatggaaca gccgcagttc aagtcgatgc gtcgtcgacg       840
     gatagctctt gttttagcga tcttgtgttg tgctttgata gagggggcag ttgaggaata       900
     tgaatttggc atttttgagt gtccactctc taagtgctgc attttcagct ttgtcgagga       960
     aatctttata gctggccccc tctccaggat tgcacagcac gattgatggg ataccgcctt      1020
     taatttgaac cggctttcca tatttacagt ttgactgcca gtccatctgg gccccgatca      1080
     attctttcca gtgctttagc ttta                                             1104
//