ID   JN572103; SV 1; linear; genomic RNA; STD; VRL; 1752 BP.
XX
AC   JN572103;
XX
DT   24-OCT-2011 (Rel. 110, Created)
DT   04-DEC-2014 (Rel. 123, Last updated, Version 2)
XX
DE   Cotyledon virus Y polyprotein gene, partial cds.
XX
KW   .
XX
OS   Cotyledon virus Y
OC   Viruses; Riboviria; Potyviridae; Potyvirus; unclassified Potyvirus.
XX
RN   [1]
RP   1-1752
RA   Duarte L.M.L., Alexandre M.A.V., Rivas E.B., Galleti S.R., Harakava R.,
RA   Chaves A.L.R.;
RT   "A new Potyvirus species in Cotyledon orbiculata in mixed infection with a
RT   Nucleorhabdovirus";
RL   J. Plant Pathol. 96(1):143-149(2014).
XX
RN   [2]
RP   1-1752
RA   Duarte L.M.L., Alexandre M.A.V., Harakava R., Rivas E.B.;
RT   ;
RL   Submitted (10-AUG-2011) to the INSDC.
RL   Plant Virology, Biological Institute, Av. Conselheiro Rodrigues Alves,
RL   1252, Sao Paulo, SP 04014-002, Brazil
XX
DR   MD5; af0d838c0139f63ee8f0ae411a16f700.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1752
FT                   /organism="Cotyledon virus Y"
FT                   /host="Cotyledon orbiculata"
FT                   /isolate="USP"
FT                   /mol_type="genomic RNA"
FT                   /country="Brazil"
FT                   /collected_by="Ligia Duarte"
FT                   /collection_date="19-Apr-2005"
FT                   /db_xref="taxon:1096808"
FT   CDS             <1..1560
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:G8HH13"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:G8HH13"
FT                   /protein_id="AEQ75506.1"
FT                   /translation="GNNSGQPSTVVDNSLMVVLAMHYAFVKENLEFEEVEEYCKFFVNG
FT                   DDLLIAINPEKQDMLDRLSGHFSSLGLNYDFSSRTRDKTDLWFMSHRGIEVDGMYIPKL
FT                   EQERVVSILQWDRAELPEHRLEAICAAMIEAWGYPELIYRIRRFYAWLLEQHPYADLAK
FT                   EGKAPYIAEMALRRLYTNRIADEEELRQFQNLFVSLDDEFECDSFEVIHQGDNVVDAGK
FT                   EKDKQDKEKDKVVLKPGGGNTMKSKDVNAGTSGTHTIPRIKAITSKMRIPKSKGISALN
FT                   LDHLLDYVPQQVDISNTRATQAQFDTWYDAVRSTYDVSEQEMPTIMNGLMVWCIENGTS
FT                   PNINGVWVMMDGTEQVEYPLKPIIENAKPTFRQIMAHFSDVAEAYIEMRNKKEPYMPRY
FT                   GLVRNLRDMSLARYAFDFYEVTSHTSTRAREAHIQMKAPALKSAQSRMFGLDGGISPQE
FT                   ENTERPLPRMFPPTCILCLAFATCSSLPTGMKNEYLSYAIYILAFPVLLLLCCNSISIK
FT                   VV"
FT   mat_peptide     <1..639
FT                   /product="nuclear inclusion body"
FT                   /note="NIb"
FT   mat_peptide     640..1557
FT                   /product="coat protein"
FT                   /note="CP"
FT   3'UTR           1561..>1752
XX
SQ   Sequence 1752 BP; 544 A; 320 C; 408 G; 479 T; 1 other;
     ggtaataata gcgggcaacc gtcaacagtt gtagacaatt cactaatggt tgttttagct        60
     atgcactacg cattcgtcaa ggagaacttg gaatttgaag aagttgaaga atattgtaag       120
     ttctttgtga atggagacga tcttttaatt gcgattaacc cagaaaagca agatatgttg       180
     gataggttgt ctgggcactt ttcaagttta ggactcaatt acgatttctc ctcacgaacg       240
     agagacaaaa ctgatctgtg gttcatgtct cacagaggaa tcgaggttga cggaatgtat       300
     atcccgaagt tggagcagga aagagtcgtg tcaattttac agtgggatag ggctgagcta       360
     ccagagcacc gattggaagc tatttgcgca gcaatgatag aagcatgggg ttaccctgaa       420
     ctcatatacc gaattcggcg tttttacgct tggctcttgg agcaacaccc gtatgcagac       480
     ttagctaagg aaggaaaagc tccctacata gcggaaatgg cgctaaggag actttataca       540
     aacaggattg cagatgaaga agagttacgg caatttcaga atctgtttgt tagtctcgat       600
     gatgaatttg agtgtgatag ctttgaagtc attcaccaag gagataacgt cgttgatgct       660
     ggtaaagaaa aggacaagca ggacaaagaa aaggataaag tggtgttaaa accaggaggt       720
     ggaaacacta tgaaatcaaa ggatgtgaat gctggtacat ctggaaccca taccatacca       780
     cgaataaaag caatcacatc aaagatgcgg atcccaaaat ccaaaggaat aagcgctctc       840
     aaccttgatc accttctgga ttacgtacca caacaagtgg acatatccaa cacgagagca       900
     acacaagcgc aattcgatac ctggtatgat gcggttagat ctacatacga tgttagtgag       960
     caagaaatgc caacaataat gaatggattg atggtttggt gcattgagaa tgggacctcg      1020
     cccaatatca atggagtatg ggttatgatg gatggtactg aacaagttga atatccgttg      1080
     aaacccatta ttgagaatgc caagccaact tttcgtcaaa taatggctca cttctctgat      1140
     gtagctgaag catatatcga aatgcgcaat aagaaagaac catacatgcc acggtatggt      1200
     ttagttcgaa atttaagaga catgagttta gcacgctatg catttgactt ttatgaagtc      1260
     acgtctcata cgtcaacccg agcaagagag gcacacattc aaatgaaagc cccagccttg      1320
     aaatctgcgc agtcacgaat gtttggactt gacggtggca tcagtccaca ggaggaaaac      1380
     acagaaaggc cactaccgag gatgtttccg ccaacatgca tactttgctt ggcgttcgca      1440
     acatgtagtt ccttgcctac tgggatgaaa aatgaatatt tatcgtatgc aatctatatt      1500
     ctggcttttc ctgtactact tttattatgt tgtaacagta tttcaattaa agttgtttag      1560
     cgtggccgca taattttgtt atgtgggtaa agctattcaa ccctataaca aggagtgact      1620
     cttgatttng tcatcgaggt gatccttttt ctagtttgtt tctgtttacg aaaactatat      1680
     aaaagttctg gattgttgtc gtgagtggtg ttgcgattcc gtcgtagcag tgatttaaga      1740
     tttcaatcag gc                                                          1752
//