Dbfetch
ID JN572080; SV 1; linear; viral cRNA; STD; VRL; 6854 BP. XX AC JN572080; XX DT 07-FEB-2012 (Rel. 111, Created) DT 18-APR-2012 (Rel. 112, Last updated, Version 3) XX DE Wyeomyia virus strain original RNA-dependent RNA polymerase gene, complete DE cds. XX KW . XX OS Orthobunyavirus wyeomyiae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Peribunyaviridae; Orthobunyavirus. XX RN [1] RP 1-6854 RX PUBMED; 22278828. RA Chowdhary R., Street C., Travassos da Rosa A., Nunes M., Tee K.K., RA Hutchison S.K., Vasconcelos P.F., Tesh R., Lipkin W.I., Briese T.; RT "Genetic characterization of the Wyeomyia group of orthobunyaviruses and RT their phylogenetic relationships"; RL J. Gen. Virol. 93(5):1023-1034(2012). XX RN [2] RP 1-6854 RA Chowdhary R., Briese T.; RT ; RL Submitted (10-AUG-2011) to the INSDC. RL Center for Infection and Immunity, Columbia University, 722 West 168th RL Street, New York, NY 10032, USA XX DR MD5; b7b493a694c24aaf9c0971f516a1dc39. DR EuropePMC; PMC3541803; 22278828. DR EuropePMC; PMC3838119; 24067954. DR EuropePMC; PMC4507351; 26186514. XX CC GenBank Accession Numbers JN572080-JN572082 represent sequences CC from the 3 segments of Wyeomyia virus strain original. XX FH Key Location/Qualifiers FH FT source 1..6854 FT /organism="Orthobunyavirus wyeomyiae" FT /segment="L" FT /strain="original" FT /mol_type="viral cRNA" FT /country="Colombia" FT /collection_date="1940" FT /db_xref="taxon:3052456" FT CDS 37..6747 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="RdRp" FT /db_xref="GOA:H6U339" FT /db_xref="InterPro:IPR007099" FT /db_xref="InterPro:IPR007322" FT /db_xref="InterPro:IPR029124" FT /db_xref="UniProtKB/TrEMBL:H6U339" FT /protein_id="AEZ35273.1" FT /translation="MEEEKYAQFTARIATARDATVGKDIDVDLMIERHNYFGRQLCDSL FT EIEYRNDVPLVDILLDAIPGFDPMATEIPNITPDNYLLIDGWIIIIDYKVSVTNETTEI FT TLEKYNRCMEIINQQIPINYEVAIIRINPITNQLFVTGEQFMRHFPNIPINVDFSRFEE FT LKRSLYLKFADDEEFLLKVAHGDFTLTAPWCYDMTPEIFEHPEFVFFISSMPKPFQELF FT FKTMDFSAYSAERWNSQLHLIKDYTKRYYEEYVRKHAKNVFIFDGNYERPTQSEIDKGW FT EIMSSRIESEREITTDISKQKPSVHFIWAEAADRKLSNSTSKLIFLSNSLKSIKDISTI FT TETLKAIGQSMDIDNKVGQYESLCLERKMLTRSTGKKIENKKLEPVKIGNALVLWEQQF FT VLPNELFKANERQKFFKQFLGIGGHKRFNKKTADDIEIEKPRILDFNNKQVQDAATFMV FT NKNKKYLQEFSKFTVNHPIIDNYREQITETNIETMKTLDIISKTNFWRCINDISTLMRN FT ILSVSQYNRHNTFRVAMCANDSVYALVFPSSDIKTKRATVVFCTIAIHKEEKGIFDAGC FT LHTTLKMNTGGYISISKAIRLDKERCQRIVSSPGLFILSAILMYNNNPSINLFDVLNFT FT FYTSLSITKSMLSLTEPSRYMIMNSLAVSSHVKDYIAEKFSPYTKTLFSVYMTMLIKKG FT CSTANNQSKKIQLRNVFLSDYDITQKGAGDDRDLESIWFNGLVSLKEYISQIYLPFYFN FT AKGLHEKHHVMIDLAKTVIEIELEQRKIAQEIWSETPIKEHVNLNILLHSIAKNLILDT FT SRHNHLRNRVENRNNFKRSITTISTFTSSKSCIKRGNFRELKTEQSKKSQKAATSAEKK FT YRVSNPLFITEELDKLETTHAKYEQIIQVIPNYRDIMSTKVFDRLYELLKNGTITDKPF FT IEQALNMMKTHTDFTFTFFNKGQKTAKDREIFVGEFEAKMCMYVVERIAKERCKLNSDE FT MISEPGDAKLKILEQKAEQELRFIVERTKDKFLKGDPCKALKMEINADMSKWSAQDVFY FT KYFWLIAMDPILYPKEKYRILFFMCNYLQKVLVLPDELIGNILDQKKTYNNDIILEGTD FT FLHQNYVNIRRNWLQGNFNYLSSYIHTCAMSVFKDILKEVSYLLDGDVLVNSMVHSDDN FT QTSITYVQNKIEESVLINHGLKTFETVCLTFGCQANMKKTYLTHNIKEFVSLFNIHGEP FT MSVYGRFLLPSVGDCAYIGPYEDLASRLSAAQQSVKHGCPPSLAWLAISCSHWITHLTY FT NMLDDQVNSPIGYFPSRNRFDIPVELNGLLNAPLYLIALVGLESENLWFLIKLLKKLVP FT IDKQKEDVQTQILAIQEAELTESEVLRLKLLRFLALDTEITSDTNFGETSDMRSRSLLT FT PRKFTTIGALNRLISYLDFKLSLNDNAHIENLDYMIENPELLVTKGESSVEYMNSILYR FT YNSKRFKESLSIQSPAQLFIEQILFSHKPIIDYSSIFDKLTSMSETDMILEEATPIGRL FT TYPQAYRQLVSDLNNLNITLEDIIIVYKHCIINDPLLITAANTALLCMQGTPQQRVGLS FT ACQMPEFRNMKLIHHSPALVLKAFSKNTLEIHGVEQLELQKDLYHLEEFLRETRILEKF FT QERLENLPANLTETERRIHHLRELTKVYQVCYDYIKSTEHKVKIFILPMKSYTALDFCT FT LIQGNTISDKEWYTMHYLKHIIAGNQKGHVLQHSTHDQIIANECFRALTHFADYFIEGT FT SRQSFIVQVIENYRYKNIKVKDLLNVILNSPARINFLPLLFRVNELTQSDLNKYDALKT FT DERVSWNNWQTNRTLNSGIIDLTITGYMRSIRIVGEDKTLKIAELIVPNFHPNTIFHAG FT NKLLNSKHGLRFEYMEEVLIDENVNYYITFQKKRANKYNYQISTIEHIMRRNREGEALR FT GIKHNRMVPVCPVIPAIQEIDRIISLKDIPALNMVNYYMARLLIKPEEYATIKKAHMSK FT MHFFNGPDITKGIISITSLMHTQELLNLDFDNLCKNSILPFCRILNCNGEIDEEPLFLS FT DEIMDFTISEEIESIPLFTIQYSKKGETHMTYKNAIRQMILRGKQEIEEIFTFCDDGLY FT SKKNLGILNAIVSMIDLLETNEWSTSIKNAFHIAMIAEGMDRQFHLFKIPLTFMSNPAS FT GEINWSKVLRFVNSLPDIRVEPWGSMFNRFKIKTEFLIKREMQKGSNLEDFLEELEFSE FT GKSNLSFI" XX SQ Sequence 6854 BP; 2654 A; 1004 C; 1171 G; 2025 T; 0 other; agtagtgtac tcctatcaga aaaaactttc ataaaaatgg aagaagaaaa atatgcacaa 60 ttcacagcta gaattgctac agccagagat gcaacagtag gaaaagacat agatgttgat 120 ttaatgatag aacgacataa ttattttggc aggcaattat gtgattcact tgaaattgaa 180 tatagaaatg atgtcccgct tgttgacata ttgttagatg caatcccagg gtttgatcct 240 atggcaactg agatccctaa cataacccca gacaattatt tgctgattga tggttggata 300 attatcatag attataaagt ttcagtaact aatgagacta cagaaataac cctcgagaag 360 tataataggt gcatggagat tataaatcag caaataccaa ttaactatga agtagcaatt 420 ataagaatta acccaatcac taaccagtta tttgttacag gagaacaatt tatgagacac 480 tttccaaata ttcctataaa tgtggatttt tctaggtttg aagaattgaa gcggagtttg 540 tatctaaaat ttgctgatga tgaagaattc ttgcttaaag tagcacatgg ggacttcaca 600 ctaactgctc catggtgtta tgatatgaca ccagagatat ttgagcatcc agaatttgtc 660 ttcttcatat cctcaatgcc aaaacctttc caagagcttt tctttaagac aatggacttt 720 agtgcatact ctgctgaaag atggaatagc caattacatt taataaaaga ttatacaaaa 780 agatattatg aagaatatgt caggaaacat gcaaaaaatg tttttatttt tgatgggaat 840 tatgagagac caacccaatc tgagattgat aaaggttggg aaatcatgtc aagtcgtatt 900 gaatcagaaa gggaaataac aacagacatt tcaaagcaaa agccttcagt tcattttata 960 tgggctgaag cagcagatag gaagctctca aattcaactt ctaaattgat cttcttgtca 1020 aatagtttga aatcaatcaa agatatttct actataacag aaacattaaa agctatagga 1080 cagtcaatgg atatagacaa caaagttggg caatatgaat cattatgttt ggaaaggaaa 1140 atgcttacta gatcaacagg gaaaaagata gaaaataaaa aattagaacc tgtaaagata 1200 gggaatgctc tagttttatg ggaacaacag tttgtattac ctaatgagtt atttaaagca 1260 aatgaacgtc agaaattctt taagcaattc cttggcatag gtggccataa aaggttcaat 1320 aagaaaactg cagatgatat agaaatagaa aaaccacgta tcttagattt caataataag 1380 caggttcaag atgcagcaac atttatggtg aataagaata agaaatattt acaagaattt 1440 tcaaaattta ctgtaaatca ccctattata gataattata gagaacaaat aactgagact 1500 aatattgaaa caatgaaaac attagacatt atttcaaaaa ctaatttttg gagatgcata 1560 aatgatatct ccactttaat gcgaaacata ttgtctgtct ctcaatataa taggcataac 1620 acatttaggg ttgcaatgtg tgccaatgat tctgtttatg ccttagtttt cccatcttct 1680 gatataaaaa ctaagcgagc aactgtagtg ttttgcacta tagcaattca taaggaagag 1740 aaaggtatct ttgacgcagg atgtttgcat accaccttaa aaatgaatac tgggggttat 1800 atttccatct caaaggcgat cagacttgac aaggaaaggt gtcagaggat tgtctcttca 1860 cctgggttat ttatattgag tgcaatacta atgtataata ataatccgtc tataaacctc 1920 tttgatgttt taaattttac tttctatact agtttatcta ttacaaagag tatgttatca 1980 ttaacagagc cttcaagata catgattatg aattcgttag ctgtgtccag ccatgttaaa 2040 gattacatag cagaaaagtt ctcaccctat actaaaacat tattcagtgt ttatatgaca 2100 atgctaataa agaaaggttg tagtacagca aacaaccagt ccaaaaagat acaattgcgc 2160 aatgttttct tatctgatta tgatataacc caaaaaggtg caggtgatga tagagattta 2220 gagtctatat ggtttaatgg gttagttagt ctaaaagagt atatttcaca aatataccta 2280 ccattctatt ttaatgccaa aggtcttcat gaaaagcacc atgtgatgat tgatctagct 2340 aaaacagtaa tcgaaataga gcttgagcag agaaagattg cccaagaaat atggtctgaa 2400 acacctatta aagagcatgt aaatttaaat attctattgc attctattgc aaaaaattta 2460 atattagaca cgtcaaggca caatcattta agaaatagag tcgagaatag aaacaacttc 2520 aaaagaagta taacaacaat tagtacattc acaagttcaa aatcatgtat aaaaagagga 2580 aattttagag aattgaaaac tgaacagtca aaaaaatccc aaaaggctgc cacttctgca 2640 gaaaaaaagt atagagtttc aaacccacta ttcattacag aagagcttga caaattagag 2700 acaactcatg caaaatatga acaaataatc caagtaatac ctaactatag agacataatg 2760 tcaacaaaag tttttgatag attatatgaa cttttaaaga atgggacaat aactgataaa 2820 ccatttatag agcaagctct aaatatgatg aaaacacaca cagattttac attcactttt 2880 tttaataaag gtcagaagac tgcaaaagat agagaaatct ttgttggaga atttgaagct 2940 aaaatgtgta tgtatgtagt agaaaggata gcaaaagagc gatgtaaatt gaattcagat 3000 gaaatgataa gtgagcctgg tgatgcaaaa cttaaaatct tagaacagaa agcagaacaa 3060 gaattaagat tcatagtaga aagaaccaaa gataagtttt taaaaggtga cccatgtaaa 3120 gccctcaaaa tggaaatcaa tgctgatatg tcaaaatgga gtgctcaaga tgtattctac 3180 aaatactttt ggttaatagc tatggatccc atactatatc ctaaagagaa atataggatt 3240 ttgttcttta tgtgtaatta tttacaaaaa gtcttagttc tgccagatga gttgataggt 3300 aatatcttgg atcagaaaaa aacatacaac aatgacataa tactagaagg gacggatttt 3360 ttacatcaaa attatgtcaa tattagaaga aattggctac aggggaattt caattatctt 3420 tctagttaca tacatacatg tgcaatgtct gtttttaaag atatcttaaa agaagtttct 3480 tacttgttag atggagatgt attagtgaat tccatggttc attcagatga taatcagaca 3540 tcgattacat atgttcaaaa taagatagaa gaatctgtat taattaacca tggcttaaaa 3600 acatttgaaa cagtgtgttt gacatttgga tgccaagcaa atatgaagaa aacatactta 3660 actcacaaca ttaaagaatt tgtatcatta ttcaacatac atggagaacc tatgtctgtg 3720 tatggtcgat tcctcttacc aagtgtaggt gattgtgctt acataggtcc atatgaagat 3780 cttgcaagta ggctgtctgc agcgcaacaa agtgtgaaac atggttgtcc tccaagtcta 3840 gcttggttgg caatctcatg cagccattgg ataacacatc tgacatataa tatgttagat 3900 gaccaagtta actctcctat aggatatttc ccaagtagaa acagatttga tatacctgtt 3960 gaattaaacg gactattaaa tgcaccattg tatttaatag cactagttgg actagaatct 4020 gagaaccttt ggtttctaat aaagcttttg aaaaaactag tcccaataga taagcagaaa 4080 gaagatgtcc aaactcaaat ccttgcaata caagaagcag aattgacaga atcagaagta 4140 cttagattaa aattacttag attcttagct ttagatacag aaattacatc tgataccaac 4200 tttggtgaaa ctagtgatat gaggagtaga tcgttgttaa caccaagaaa gtttacaaca 4260 attggagcct taaatagatt aatatcatat ttagatttta aattgtcact gaatgacaat 4320 gctcatattg agaatctaga ctatatgata gagaacccag aactcttagt cacaaaaggt 4380 gaaagttcag tggaatatat gaatagtata ctatatagat acaattccaa acgatttaag 4440 gaaagtttat caatccaaag tccagctcag ctatttatag aacagatctt gttttcacat 4500 aagcctataa ttgattacag tagcatattt gataagctaa caagtatgtc agaaacagat 4560 atgatattag aggaagcaac tcccataggc cggctcacat atccacaagc atatagacaa 4620 ttagtttctg atttaaacaa tctgaatata actctagaag atataattat cgtttataag 4680 cattgcatta tcaatgatcc tttgttaatt actgcggcaa acacagcatt attatgcatg 4740 caagggacac cacagcaaag agttggccta tctgcatgtc agatgcctga attcaggaac 4800 atgaaattaa ttcatcactc acctgcatta gtcttaaaag cttttagtaa aaatacacta 4860 gaaatacatg gagtagaaca gctagaacta caaaaagatt tatatcattt agaagaattt 4920 ttaagagaaa ctaggatact tgaaaaattc caggaaagac tagaaaatct cccagctaat 4980 ttaacagaga cagaaagaag aatccatcat cttagagaat taacgaaagt ctaccaagtt 5040 tgttatgatt atataaagtc tacagaacac aaagttaaaa tatttatatt gccaatgaaa 5100 tcatatacag cattagattt ctgcacttta atacaaggga acacgatatc agataaggaa 5160 tggtacacaa tgcactattt aaaacatatt atagcaggaa atcaaaaggg gcatgtttta 5220 caacactcaa cacatgatca aataattgct aatgaatgct ttagagcttt gacacatttt 5280 gcagattatt ttattgaagg gacatcaagg cagtcattta ttgtacaggt gattgaaaat 5340 tatagatata agaatattaa agttaaagat ttgctaaatg ttatactcaa tagcccagca 5400 agaataaatt tcttaccctt actatttaga gtcaatgaat taactcagtc tgacttaaat 5460 aaatatgatg cattgaaaac agatgaaaga gtatcttgga acaactggca gacaaatagg 5520 acactcaatt ctggtatcat tgacttaaca atcactggat atatgagatc tataaggata 5580 gttggtgaag ataaaacact aaaaatagca gaattgatag tccctaactt ccatcctaat 5640 actatcttcc atgctgggaa taaattacta aactcaaaac acgggttaag gtttgaatat 5700 atggaggaag tcttaatcga tgaaaatgtc aattattata taactttcca gaagaaaagg 5760 gctaataagt ataattatca gatatcaact atagaacata ttatgagaag aaatagagaa 5820 ggtgaagcat taagaggaat taagcacaat agaatggtcc ccgtttgccc agtaatacct 5880 gcaatacagg agattgacag aataatatca ttaaaagata ttccagcatt gaatatggtt 5940 aactactata tggcaagact gttaattaaa cctgaagagt atgcaaccat aaagaaagca 6000 catatgtcta aaatgcactt ttttaatggg ccagacatta caaaggggat aataagtata 6060 acatcattaa tgcatacaca agaactactt aacttagatt ttgacaactt atgtaaaaat 6120 agtatcttac cattctgtag aatattaaat tgtaatggtg aaattgatga ggagccattg 6180 ttcttgtctg atgaaatcat ggatttcaca atatcagaag agatagagtc tataccccta 6240 tttactatac aatatagcaa aaaaggtgag actcatatga catacaaaaa tgcaattcgg 6300 caaatgattt tgagggggaa gcaagaaatt gaagaaattt tcacattttg tgatgatgga 6360 ttatattcaa aaaagaattt aggcatatta aatgcaattg tatctatgat tgacctatta 6420 gagacaaatg aatggtctac ttctatcaaa aatgctttcc atattgcaat gattgcagaa 6480 ggaatggaca ggcagttcca tctattcaaa ataccactta cattcatgtc aaatccagcc 6540 tcaggggaaa taaactggtc gaaagtctta agatttgtta atagcttgcc agacataaga 6600 gttgaaccat ggggctctat gttcaatagg tttaaaataa agactgaatt tttaataaag 6660 agggaaatgc agaaaggctc taatttagaa gatttcttgg aagaattgga atttagtgaa 6720 gggaaatcaa atctatcatt tatctaacaa attagtaccc gcaattatag atataatata 6780 taatctaaaa tcttaaccct tttatattat gtaaaaataa tataaaaggg tttaagaata 6840 aaagttagtt ctga 6854 //