ID JN566124; SV 1; linear; genomic RNA; STD; VRL; 6514 BP. XX AC JN566124; XX DT 02-JAN-2012 (Rel. 111, Created) DT 04-APR-2012 (Rel. 112, Last updated, Version 2) XX DE Clitoria yellow mottle virus isolate Larrimah, complete genome. XX KW . XX OS Clitoria yellow mottle virus OC Viruses; Riboviria; Virgaviridae; Tobamovirus. XX RN [1] RP 1-6514 RA Wei K., Gibbs A.J., Maclenzie A.M.; RT ; RL Submitted (08-AUG-2011) to the INSDC. RL Research School of Biological Sciences, Australian National University, RL Acton, Canberra, ACT 0200, Australia XX DR MD5; ac2748b631ddc8183a3640b11076b7c9. DR EuropePMC; PMC5282660; 28137291. XX FH Key Location/Qualifiers FH FT source 1..6514 FT /organism="Clitoria yellow mottle virus" FT /host="Clitoria ternatea" FT /isolate="Larrimah" FT /mol_type="genomic RNA" FT /country="Australia:Northern Territory" FT /collection_date="Apr-1995" FT /db_xref="taxon:1128119" FT CDS 76..4977 FT /codon_start=1 FT /transl_except=(pos:3475..3477,aa:OTHER) FT /product="replicase readthrough component" FT /note="contains RNA polymerase" FT /db_xref="GOA:G9I487" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:G9I487" FT /protein_id="AEW50165.1" FT /translation="MSTSTLINDAQSALCVDPSVKDLLKRKVYDDTVKTMQGLDKRPKY FT RLNQALTPEQCNAVRGAYPEFQIEFAGTQLASHAVAAGLRGLELEYLYMQVPFGSICYD FT IGGNFPVHMLKGRSYVHCCNPALDARDLARNENYRITIANYLSRFESKSGEDAVWGRRK FT KKMQKPLPAFQKSCFERYAADVAEVTCSHTFQTCPVSPPEGREDIYATSLHPLYDIPVD FT ELAPALLRKGVKVLHAPLHFSEDLILGATEGTLTEIDGVFQRFGDVLTFSFLEESSLVY FT THSFRNVCDYITRTFFVADTRHAYMKEFRARRVDTVFCSFIRIDTFCLYRSVFKTESFS FT AFSDSMDAAWEFKKKKAMLEAARPVFRDTAMFNIYFPKSKNKVCLPIFSVKSVSHSPVV FT TKHILIDKDFYWTVLNHIMTYPDNRTDFRTVMSFIESVRSRVVINGTTTASQWDVDKSH FT LKDIALSIMLIAKLEKLKVSIIEKRIKVERQGLVALLKEFMQGILDEYTVSLAEWVVNK FT GWVKSVDQVLEVSIPEFVKTFRDHFSCELGGIASYREVSVEEHLMTANRYYQKVSDLVE FT KNPTIAFDIEKFQTYCENLGVDVNTATEFVDAITSGTAGITLSQQPDVERRTAETLASG FT SSYVDEGDDGMNELICLSDRAPVNRSTVLKEMSNNIVIFEGTLPKRSTFVAAPEDPEEI FT IAVDELHGRLVGDFLSLQKPINIVYTGDVQICQMKNYLDYLSASLVACVSNLKKYLQDQ FT WIQRGEKFQKIGIWDNQDRKWIVIPPKKKHAWGLALEVNGDQRTVIISYDEHDNPILEK FT KYVRLAVSTDTYLFSVVSMLGFLRTQDQVKPTARITLVDGVTGCGKTGEILSRFNPKED FT LILVQGREASEMIRRRANSKAPTSGTRDNIRTFDSFIMNRKPGTFKTLWIDEGLMVHPG FT LINFCLNLSGCQQAFVYGDRKQIPFINRVMNFAVPENLAKLCHDEIEYRDVTKRCPVDV FT THFLNGVYERPIVTTSNVQHSLSTKSIEGRSRFVLLKDEISQGKVVTFTQDEKDYLIKI FT GYNAVNTVHEVQGETYRDVSLVRMTATPVSIIAKGSPHLTVALSGHTNSLCYYTVLADV FT VSTEIEKCQNMPSFLLDMYTADRLTKXQLQIRPFIRFEVPFIETKKVGHVSDLQYFYDS FT CLPGNSLVLGEHDQWSIVSRDISLHSEPVVLDMSKRYIHRSQEDRFLRPVLRTAVELPR FT KPGLIENLLALIKRNFNAPALSGQIDYEYLSKRVADTFFEKLLPPDVEAVANLRLDPDD FT VFSIDNFVGWLEKQDTKVVGELANWDHIGMPAVDQYRHMIKRQPKAKLDSSIQYEYPAS FT QTIVYHSKHVNAVFGPIFSRLTEKLLSVIDPLKFRYFTRTTPEELQDFFKDLVSGDLEI FT LELDISKYDKSQNQFHFEVEMRIWERLGIDCYIAKLWENGHRRTFLKDYTAGIKTVIEY FT QKKSGDVTTFIGNTIVIAACLCSILPLEKCYKAAFCGDDSIIYLPRNILYPDIQQTASH FT LWNFEAKLFRKLHGYFCGRFILRSNGHIRMIPDPLKIVTKLGCKSIRDRAHLEEFRISL FT FDMASEYKNMFMFDLLEAAVKESYPSAEGCSIAFCAIYKYLSNKVLFGTLFEDV" FT CDS 76..3477 FT /codon_start=1 FT /product="replicase" FT /db_xref="GOA:G9I488" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:G9I488" FT /protein_id="AEW50164.1" FT /translation="MSTSTLINDAQSALCVDPSVKDLLKRKVYDDTVKTMQGLDKRPKY FT RLNQALTPEQCNAVRGAYPEFQIEFAGTQLASHAVAAGLRGLELEYLYMQVPFGSICYD FT IGGNFPVHMLKGRSYVHCCNPALDARDLARNENYRITIANYLSRFESKSGEDAVWGRRK FT KKMQKPLPAFQKSCFERYAADVAEVTCSHTFQTCPVSPPEGREDIYATSLHPLYDIPVD FT ELAPALLRKGVKVLHAPLHFSEDLILGATEGTLTEIDGVFQRFGDVLTFSFLEESSLVY FT THSFRNVCDYITRTFFVADTRHAYMKEFRARRVDTVFCSFIRIDTFCLYRSVFKTESFS FT AFSDSMDAAWEFKKKKAMLEAARPVFRDTAMFNIYFPKSKNKVCLPIFSVKSVSHSPVV FT TKHILIDKDFYWTVLNHIMTYPDNRTDFRTVMSFIESVRSRVVINGTTTASQWDVDKSH FT LKDIALSIMLIAKLEKLKVSIIEKRIKVERQGLVALLKEFMQGILDEYTVSLAEWVVNK FT GWVKSVDQVLEVSIPEFVKTFRDHFSCELGGIASYREVSVEEHLMTANRYYQKVSDLVE FT KNPTIAFDIEKFQTYCENLGVDVNTATEFVDAITSGTAGITLSQQPDVERRTAETLASG FT SSYVDEGDDGMNELICLSDRAPVNRSTVLKEMSNNIVIFEGTLPKRSTFVAAPEDPEEI FT IAVDELHGRLVGDFLSLQKPINIVYTGDVQICQMKNYLDYLSASLVACVSNLKKYLQDQ FT WIQRGEKFQKIGIWDNQDRKWIVIPPKKKHAWGLALEVNGDQRTVIISYDEHDNPILEK FT KYVRLAVSTDTYLFSVVSMLGFLRTQDQVKPTARITLVDGVTGCGKTGEILSRFNPKED FT LILVQGREASEMIRRRANSKAPTSGTRDNIRTFDSFIMNRKPGTFKTLWIDEGLMVHPG FT LINFCLNLSGCQQAFVYGDRKQIPFINRVMNFAVPENLAKLCHDEIEYRDVTKRCPVDV FT THFLNGVYERPIVTTSNVQHSLSTKSIEGRSRFVLLKDEISQGKVVTFTQDEKDYLIKI FT GYNAVNTVHEVQGETYRDVSLVRMTATPVSIIAKGSPHLTVALSGHTNSLCYYTVLADV FT VSTEIEKCQNMPSFLLDMYTADRLTK" FT CDS 4970..5860 FT /codon_start=1 FT /product="movement protein" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:G9I489" FT /protein_id="AEW50166.1" FT /translation="MSEVSKVESLLAPSKFVKISMSDKFKWKTPSRICTIVQSDTISMT FT GNGRQLFSFDVLKDSLKFAEEFIYMDLLGITLTGQWLLPKGTPGAAEVILLDSRLKGRA FT SVLSVFKCVAADQEFQFLLKPGYSIACEDAKKSPFELVCNVTDLPVKQGFVPLSVEIAC FT LVQFSNCVLTRSLTRKLGSKPNEKQFAVEEVDELMGSMTTLKQIEGLRRTKKDVVDSAV FT VQSYKVGKDIRPLPSEKVGRANSGFGPKKTKKKEIKVDLNKVRSGLSDMEFSDEASVNN FT DADSVIDHGLSYSET" FT CDS 5835..6326 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:G9I490" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:G9I490" FT /protein_id="AEW50167.1" FT /translation="MAYHTPRPNQLVYFTNAFAEYFGFVNSLQKARVNSFQTQAGRDQL FT REVLVNSQVSVASPTVRFPENSFYVSFVDASVSTVYNALLQSTDTRNRVIEVENSSSVS FT TTEQINAVRRTDDASTAIHNNLDQLLNLLAAGTGVLDRQSFESTSGLTWTAQGALRATT FT " XX SQ Sequence 6514 BP; 1800 A; 1274 C; 1538 G; 1902 T; 0 other; gtaatttgct tttaaacaac acggtttaaa agttcaaatt cgacatttac atttacattc 60 aacaattaca acaacatgtc tacatctaca cttatcaatg acgctcagag cgcgctctgc 120 gttgacccgt cagtcaaaga tcttctcaaa aggaaggtct atgacgacac ggtcaagaca 180 atgcagggct tagacaagcg gcctaaatac cgcttgaacc aagcgctcac cccagaacag 240 tgtaacgctg tgagaggcgc ttaccctgag tttcaaatag aattcgcggg tactcaactc 300 gcatcacacg cagttgccgc cggacttcgc ggacttgagc ttgaatactt gtatatgcaa 360 gttcctttcg gctcaatctg ctatgatatt ggcggtaact tccctgtgca tatgcttaaa 420 ggcagatcat acgtgcactg ttgtaaccca gcacttgatg caagggattt ggcaaggaac 480 gagaattatc gaattactat agccaactac ctctcgaggt ttgaaagcaa gtctggagaa 540 gatgcagttt ggggaaggcg gaaaaagaaa atgcaaaaac cattaccagc cttccaaaaa 600 tcttgtttcg aaagatatgc agctgatgtg gcagaagtta catgctccca tacatttcag 660 acatgccctg tttcaccacc ggaaggtcgc gaagatatat atgcgacaag tttgcatccc 720 ttatatgata tcccggttga tgaacttgcc cccgccttac ttaggaaggg cgttaaggtt 780 ctgcatgcac ctctccactt ttctgaggat ctgatacttg gtgctactga aggcactttg 840 accgaaatcg atggagtttt ccagaggttc ggcgatgttc tcaccttttc gtttctagag 900 gagtcatctt tggtgtacac acatagtttc cgtaatgtat gtgattatat tactaggact 960 ttttttgtgg cagacactcg gcatgcttac atgaaggaat tcagagcgcg tcgtgttgac 1020 accgtttttt gtagtttcat tcgtattgat actttctgtc tgtaccgtag tgtttttaaa 1080 actgagagtt tctcagcttt ttcggattca atggatgcag cttgggagtt caaaaagaag 1140 aaggctatgt tggaagcggc tagacccgtt ttccgtgaca ctgcgatgtt caatatttac 1200 ttcccaaagt ccaaaaacaa ggtttgtctc cctatttttt ccgtcaagtc tgtttcacac 1260 tcacctgtag tcacaaagca tatccttatt gacaaggatt tttattggac ggttctgaac 1320 catataatga cttatcctga caatagaacc gatttccgca ccgtcatgtc ctttattgag 1380 agtgtaaggt ccagagttgt tatcaatggt acgacaactg cttcccaatg ggatgtcgac 1440 aagtcacacc ttaaagacat tgcgttaagt atcatgttga ttgctaagtt ggaaaaactt 1500 aaagtgagca tcatcgagaa gaggatcaaa gtcgaaagac agggactcgt tgcactactg 1560 aaagaattca tgcagggtat cctagacgag tacaccgtat ctttggccga atgggttgtt 1620 aacaaaggat gggtgaaatc agtggatcaa gtcctagaag tgagtatccc agaatttgtg 1680 aagaccttca gagaccattt ttcatgtgag ctcggaggga ttgcttcgta tcgtgaagta 1740 tcagtggagg aacacttgat gactgctaac cgatactatc agaaggtcag tgatctggta 1800 gagaaaaacc caactattgc tttcgacatc gagaagtttc agacgtattg tgaaaactta 1860 ggtgttgacg ttaatacggc aacagagttt gttgatgcca tcacaagcgg tacagccggg 1920 atcactttgt cgcaacagcc agatgttgaa aggcgaaccg ccgaaacctt ggcttctgga 1980 tcatcttatg ttgacgaagg ggacgatggt atgaatgaac tcatctgtct atctgaccgc 2040 gcccctgtca atcgttcgac ggttttaaaa gaaatgtcca ataacattgt cattttcgaa 2100 gggaccttac caaagcgttc gacttttgtc gctgcgcccg aagaccccga ggaaataatt 2160 gctgtggacg agttgcatgg taggcttgtt ggtgatttcc tttcattgca aaaaccaata 2220 aatatagtct acacaggtga tgtacagatc tgtcagatga agaattattt agattacctc 2280 tccgcatcac tggtcgcttg tgtttcaaat ctgaaaaaat atctacagga tcagtggatt 2340 caaaggggtg agaagttcca gaagataggg atctgggata atcaggacag gaagtggatc 2400 gtgatcccgc cgaagaaaaa gcacgcttgg ggtttggcgc tcgaagtcaa tggtgatcaa 2460 cgtactgtga tcatctctta cgatgaacac gataacccca ttttagaaaa gaagtacgtg 2520 cggcttgcag tctccacaga tacatatctg ttttctgttg tgtccatgtt agggttttta 2580 cgcacccagg atcaagttaa acctacagca cgcatcacat tagttgatgg cgttactggt 2640 tgcgggaaga ccggtgagat tctttcacgt tttaatccga aggaagatct tattttggtg 2700 caggggagag aagcttcgga aatgatcaga cggcgtgcga attccaaagc accgacaagt 2760 ggcacaaggg acaatattcg tacgttcgat tcgttcatca tgaacaggaa gcccggaacg 2820 ttcaagacgt tatggatcga tgaagggttg atggtacatc ctgggttaat taacttttgt 2880 ctgaatcttt ctgggtgtca gcaagcattt gtatacggtg atcgtaaaca aattccattt 2940 attaaccgtg ttatgaattt tgctgttcct gagaatttgg cgaaattgtg tcacgatgag 3000 atcgagtatc gtgatgtgac caaaagatgc ccagtggatg ttacccattt tctcaatggt 3060 gtgtacgaga gaccaatcgt cacgacctca aatgtacaac actcactctc aacaaaatca 3120 attgaaggaa ggagtcggtt tgtattgctt aaggacgaaa tctctcaagg gaaggttgtt 3180 accttcacac aagatgagaa ggattacctc attaagatcg gttacaatgc tgtcaataca 3240 gtgcatgagg ttcaaggtga aacatataga gacgtcagct tagtgcggat gactgctact 3300 ccggtgagta taattgccaa gggttcacct catctcacag ttgcattatc aggacacacc 3360 aacagcctgt gttattatac cgtgttggcg gacgtggttt cgactgagat tgagaaatgt 3420 cagaatatgc catctttctt actggatatg tacacagctg atcgtcttac caaatagcaa 3480 ttacagatcc gaccgttcat acgttttgag gtgccattca ttgaaacaaa gaaggttggt 3540 catgtcagtg acttgcagta cttttatgat agttgtctac caggtaattc tcttgttctt 3600 ggggaacacg atcagtggtc gattgtgtct agagatattt cattgcattc tgaaccagta 3660 gtgcttgata tgtcgaaaag atacatccac cgatcgcaag aggataggtt cttgcgcccc 3720 gtactccgaa ccgctgtgga gttaccgagg aagcctggtt taattgaaaa tctgcttgcg 3780 ctgatcaaac gtaattttaa tgcaccggct ctctctggac agattgatta tgaatatctt 3840 tcgaagagag ttgcggatac cttctttgaa aagttattac ctccagacgt cgaagcggtc 3900 gcgaatctcc gacttgaccc agacgatgtt ttttcaattg acaatttcgt gggttggtta 3960 gagaaacaag atacaaaagt agtgggggag cttgctaatt gggaccacat tggaatgcct 4020 gctgttgatc aatacagaca catgattaag cggcaaccaa aagctaagct ggactcgtcc 4080 attcagtatg agtatccagc ctcgcagact attgtgtatc acagtaagca tgttaatgcc 4140 gtttttgggc cgattttttc aagacttacc gaaaaactgc tgtctgtgat tgatccactc 4200 aagttcagat atttcacaag gactactccg gaagaattac aagacttttt caaagattta 4260 gtttccggtg atcttgaaat tcttgagttg gatataagta agtacgacaa gagtcaaaac 4320 caattccatt ttgaggttga aatgagaatc tgggaaagac ttggaattga ctgttatata 4380 gccaaattgt gggagaatgg gcataggagg acattcctca aagactacac agccgggatt 4440 aaaacggtga ttgaatacca aaagaagagc ggtgacgtta ctacctttat cggtaacaca 4500 atcgtaattg cagcttgttt gtgtagtatt ctccctctcg aaaagtgcta taaggctgcg 4560 ttctgtggtg atgattctat aatctattta ccgcggaaca ttctgtatcc ggatattcag 4620 caaactgcta gccatttatg gaattttgaa gccaaacttt tccggaaact tcatggttac 4680 ttttgtggaa ggtttatact caggtccaac gggcacattc gaatgattcc ggaccctctg 4740 aagattgtca caaaacttgg ttgcaagagc atcagggatc gtgcacatct ggaggagttc 4800 agaatttctc ttttcgatat ggcatctgag tacaagaata tgtttatgtt tgatttgctt 4860 gaggccgccg ttaaggaatc ttatccaagt gcggaaggct gctcgattgc tttttgtgca 4920 atttataaat atttgagtaa taaggtattg tttggtactt tgtttgaaga tgtctgaagt 4980 gtctaaagtt gaaagtttgc tcgccccttc gaagtttgtt aagatttcga tgagcgacaa 5040 atttaaatgg aagacgccta gtcgtatttg tacaatagtc cagagtgata cgattagtat 5100 gactggtaac ggtcgtcagt tgttctcttt cgatgttttg aaagattccc ttaagttcgc 5160 agaggaattc atttatatgg atcttttagg gatcacctta acgggacaat ggttgttacc 5220 caagggtaca ccaggtgcag ctgaggtgat tcttttggat tcgcggctta aaggaagagc 5280 gtctgtttta agtgttttta aatgcgttgc tgcggatcag gagtttcagt ttctactcaa 5340 accaggttat tcaatagctt gtgaggatgc taagaagtct cctttcgaat tggtttgtaa 5400 tgtgactgat cttcctgtta agcagggttt tgtaccttta agtgtcgaga ttgcgtgttt 5460 agtacaattt tctaattgtg tgttaactag gtctcttaca aggaagctag gtagtaaacc 5520 caatgaaaaa cagttcgctg ttgaagaagt cgatgagctt atgggttcaa tgaccacttt 5580 aaagcaaatc gaaggcttgc gtcgaactaa aaaagatgta gtagactcgg cggtcgtaca 5640 atcttacaag gtcggcaagg atattcggcc tcttccctct gaaaaagtcg gaagagcgaa 5700 ttctgggttt ggccctaaaa agaccaaaaa gaaggaaatt aaagtagatt taaataaggt 5760 tagatcgggg ttgagtgata tggaattttc ggatgaagca tcagtgaata atgatgctga 5820 ttctgtaatt gaccatggct tatcatactc cgagacctaa tcagttagtt tattttacca 5880 atgcttttgc cgagtatttt ggttttgtta atagtttgca aaaagcgcgt gtgaactcgt 5940 tccagacgca ggctgggcga gatcaattac gtgaggtttt agttaatagt caggtgtccg 6000 tggcctctcc gaccgtgcga tttcctgaaa atagttttta tgtgtctttt gtcgatgctt 6060 ctgtctcgac ggtgtataat gcattgctgc agtcaactga tactcgtaat agagttatcg 6120 aggtggaaaa ttcgtcgagt gtctctacga cggagcagat taatgcagtg cgccggacgg 6180 atgatgcgtc gaccgctata cataataatt tagatcagtt gctcaatttg cttgccgctg 6240 gtactggtgt actagacaga cagtcatttg agtcaacttc tggtcttacg tggacggcac 6300 aaggtgcctt gcgtgcgacc acttaggttc cgtctttgac ggtaggggcc tgccgaaaca 6360 ggtagtgttt aagcgtccac ttaaatcgaa cgctagaatt caaacgcagt cactctttgt 6420 gccgtaaagc gtttgaccgc gaagtcgcgg gttcgtgaat acaccacgaa tagtggggag 6480 cattaccccc ccgaatccca gggatatggg acct 6514 //