ID JN565944; SV 1; circular; genomic DNA; STD; VRL; 3048 BP. XX AC JN565944; XX DT 02-JAN-2012 (Rel. 111, Created) DT 16-MAR-2012 (Rel. 112, Last updated, Version 3) XX DE Parrot hepatitis B virus isolate PL, complete genome. XX KW . XX OS Parrot hepatitis B virus OC Viruses; Hepadnaviridae; Avihepadnavirus. XX RN [1] RP 1-3048 RX DOI; 10.1007/s00705-011-1197-3. RX PUBMED; 22183110. RA Piasecki T., Kurenbach B., Chrzastek K., Bednarek K., Kraberger S., RA Martin D.P., Varsani A.; RT "Molecular characterisation of an avihepadnavirus isolated from Psittacula RT krameri (ring-necked parrot)"; RL Arch. Virol. 157(3):585-590(2012). XX RN [2] RP 1-3048 RA Varsani A., Piasecki T., Kurenbach B., Chrzastek K., Bednarek K., RA Kraberger S., Martin D.P.; RT ; RL Submitted (08-AUG-2011) to the INSDC. RL School of Biological Sciences, University of Canterbury, Private Bag 4800, RL Christchurch 8140, New Zealand XX DR MD5; e7ad94991e3e4f50023c8fd0644d626c. DR EuropePMC; PMC3416299; 22553337. XX FH Key Location/Qualifiers FH FT source 1..3048 FT /organism="Parrot hepatitis B virus" FT /host="Psittacula krameri" FT /isolate="PL" FT /mol_type="genomic DNA" FT /country="Poland" FT /db_xref="taxon:1128118" FT CDS join(2545..3048,1..414) FT /codon_start=1 FT /product="precore/core protein" FT /note="preC/C" FT /db_xref="GOA:G9I483" FT /db_xref="InterPro:IPR002006" FT /db_xref="InterPro:IPR036459" FT /db_xref="UniProtKB/TrEMBL:G9I483" FT /protein_id="AEW50171.1" FT /translation="MWRLRLHPSPFGAVCQGIFTSCLLLSALTVPSVCTIVYDYCLYMD FT ANVSRALSNIYDLPDDFFPKIDDLVRDAKDALEPFWKTDSIKKHVIIATHFVDLIEDFW FT QTTQGMNHVAEALVSLIPPTTVAVPQGYLTTHEEAEEIPLDGLFNYQEERIASYQPDYP FT VPARIHTHLKVYTKINEQALDRARRLLWWHYNCLVWGEANVTNYISRLRTWLSTPEKYR FT GKDAPTIEAITRPIQVASGSRTKTQGTRKPRGLEPRRRKVKTTVVYGRRRSKSRERSSS FT SPQRAGSPIPRTSGGSRGPSTTRR" FT CDS join(2674..3048,1..414) FT /codon_start=1 FT /product="core protein" FT /db_xref="GOA:G9I484" FT /db_xref="InterPro:IPR002006" FT /db_xref="InterPro:IPR036459" FT /db_xref="UniProtKB/TrEMBL:G9I484" FT /protein_id="AEW50173.1" FT /translation="MDANVSRALSNIYDLPDDFFPKIDDLVRDAKDALEPFWKTDSIKK FT HVIIATHFVDLIEDFWQTTQGMNHVAEALVSLIPPTTVAVPQGYLTTHEEAEEIPLDGL FT FNYQEERIASYQPDYPVPARIHTHLKVYTKINEQALDRARRLLWWHYNCLVWGEANVTN FT YISRLRTWLSTPEKYRGKDAPTIEAITRPIQVASGSRTKTQGTRKPRGLEPRRRKVKTT FT VVYGRRRSKSRERSSSSPQRAGSPIPRTSGGSRGPSTTRR" FT CDS 170..2557 FT /codon_start=1 FT /product="polymerase" FT /db_xref="GOA:G9I480" FT /db_xref="InterPro:IPR000201" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001462" FT /db_xref="UniProtKB/TrEMBL:G9I480" FT /protein_id="AEW50169.1" FT /translation="MPQPLKQSLDQSKWLQVAEQKLRELENLVDLNLEEEKLKPQLSMG FT EDVQSPEKGVPLHPNVRAPLSRVLQGVQEDPPRLGDKSPASHKLGKLSGLYQMKGCEFN FT PEWKVPDITQTQFDLDIINECPSRNWKYLTPAKFWPKSISYYPREIGVKPKISDNQKQH FT EAIVGIYLNKLYEAGILYKRNSKHIVTFKGKPYPWETKYLVIQRQQYGPKSSKINGHSS FT SGRRGIIDPSNISATDKANSSSNSQWSVSINRTCYGTCAGSGRVKYFTQTRTLSGRNRA FT CLGSTQSQATISTSRDLDTGRRQTGLGNLRQIPGRTRGRIKGVREETRSHQASTTTTKT FT TTCPCVESDRERDSFRRVEYLVAAGSTSNQGAKGSQEEDVYYLRGNTTWPNRITGRIFL FT VDKNSRNTEEARLVVDFSQFSKGQNALRFPKYWSPNLSTLRRIRILPVGMHRISLDLSQ FT AFYHIPLNPASGSRLAISDGESVYYFRKTPMGVGISPFFLHLFSAAIGSEISRRFNIWT FT FTYMDDFLLCHPNARHLNAVSHAVCTFLQEFGIRINFDKMTPSPVTTIRFLGYEINEQY FT IQIEDSRWTELRTVIKKISVGKWYDWKCIQRLIGHIQFVLPFTKGNSEMLKPMYLAVKE FT QVNFSFSSRYRNLLYKLTMGVCKLTLNPKVSLPLPRVAADATLTHGAISHITGGTAVFT FT FSKVRDIRVQELLMSCLAMLMIKPRCLLSDSTFVCHKRYMTLPWNFAVLSKQLLGKVPI FT YYVPSKYNPADGPTRKKPPDWTALTYTPLSKTPYIPHRLCGG" FT CDS 693..1820 FT /codon_start=1 FT /product="large S protein" FT /note="PreS/S; envelope protein" FT /db_xref="GOA:G9I481" FT /db_xref="InterPro:IPR000349" FT /db_xref="UniProtKB/TrEMBL:G9I481" FT /protein_id="AEW50170.1" FT /translation="MKQASCISVILNTLLHLKESPILGRRNTLSSNDNNMGQSPAKSMA FT THRVEGGELLIHQISQPLIKPTPPQTLSGRFPSIEHVMEHVQAAEELNTLLKQGLYPEG FT TGRVLGVPNPKQPSAPRVTWTPEEDKQALETYAKYQAEREAALKEFEKKLAPIKPQQQQ FT QKPPPVPAWKVTEKEIPFVESSTWSPQEVPVIKVPKVPKKKMSTTFGGILLGLIGLLVG FT FFLLIKILETLRKLDLWWTSLSFPKDKMLCGFQSIGAQTSPHYVGSGSCPWGCTGFLWT FT CLRLFIIFLLILLVVAGLLYLTENLSTILGKLQWASVSALFSSISSLLPSDQKSLVVLI FT FGLLLIWMTSSSVTQTLVTLTQLATLSALFYKNSG" FT CDS 1305..1820 FT /codon_start=1 FT /product="S protein" FT /note="envelope protein" FT /db_xref="GOA:G9I482" FT /db_xref="InterPro:IPR000349" FT /db_xref="UniProtKB/TrEMBL:G9I482" FT /protein_id="AEW50172.1" FT /translation="MSTTFGGILLGLIGLLVGFFLLIKILETLRKLDLWWTSLSFPKDK FT MLCGFQSIGAQTSPHYVGSGSCPWGCTGFLWTCLRLFIIFLLILLVVAGLLYLTENLST FT ILGKLQWASVSALFSSISSLLPSDQKSLVVLIFGLLLIWMTSSSVTQTLVTLTQLATLS FT ALFYKNSG" XX SQ Sequence 3048 BP; 922 A; 650 C; 618 G; 858 T; 0 other; catacccatt taaaagttta tacaaaaatt aacgaacaag ctttggatcg tgctagaaga 60 ttgctttggt ggcattataa ttgtctggtg tggggagaag caaacgttac caactatatt 120 tctcgattaa gaacgtggtt atcaacacct gagaaatata gaggaaaaga tgccccaacc 180 attgaagcaa tcactagacc aatccaagtg gcttcaggta gcagaacaaa aactcaggga 240 actcgaaaac ctcgtggact tgaacctaga agaagaaaag ttaaaaccac agttgtctat 300 gggagaagac gttcaaagtc ccgagaaagg agttcctctt caccccaacg tgcgggctcc 360 cctatcccgc gtacttcagg gggttcaaga ggaccctcca cgactaggag ataaatctcc 420 tgcgtcgcat aagttgggga agttatcagg tttatatcaa atgaaaggat gtgaattcaa 480 tcctgaatgg aaagtaccag acatcacaca aacacaattt gatttggata tcattaatga 540 atgtccatct aggaattgga aatatttgac tccagccaaa ttttggccca agagcatttc 600 ctattatcct agagaaatag gggttaaacc caaaatatct gataaccaaa aacaacatga 660 agccattgta ggaatttatt taaataagct ctatgaagca ggcatcctgt ataagcgtaa 720 ttctaaacac attgttacat ttaaaggaaa gccctatcct tgggagacga aataccttgt 780 catccaacga caacaatatg ggccaaagtc cagcaaaatc aatggccact catcgagtgg 840 aaggagggga attattgatc catcaaatat ctcagccact gataaagcca actcctcctc 900 aaactctcag tggtcggttt ccatcaatag aacatgttat ggaacatgtg caggcagcgg 960 aagagttaaa tactttactc aaacaaggac tttatccgga aggaaccggg cgtgtcttgg 1020 gagtacccaa tcccaagcaa ccatcagcac ctcgcgtgac ctggacaccg gaagaagaca 1080 aacaggcctt ggaaacttac gccaaatacc aggccgaacg agaggccgca ttaaaggagt 1140 tcgagaagaa actcgctccc atcaagcctc aacaacaaca acaaaaacca ccacctgtcc 1200 ctgcgtggaa agtgaccgag aaagagattc ctttcgtcga gtcgagtact tggtcgccgc 1260 aggaagtacc agtaatcaag gtgccaaagg ttcccaagaa gaagatgtct actaccttcg 1320 ggggaatact acttggccta ataggattac tggtaggatt tttcttgttg ataaaaattc 1380 tagaaacact gaggaagcta gacttgtggt ggacttctct cagttttcca aaggacaaaa 1440 tgctttgcgg tttccaaagt attggagccc aaacctctcc acattacgtc ggatccggat 1500 cctgcccgtg gggatgcaca ggatttcttt ggacctgtct caggcttttt atcatattcc 1560 tcttaatcct gctagtggta gcaggcttgc tatatctgac ggagaatctg tctactattt 1620 taggaaaact ccaatgggcg tcggtatcag cccttttttc ctccatctct tctctgctgc 1680 catcggatca gaaatctctc gtcgttttaa tatttggact tttacttata tggatgactt 1740 cctcctctgt cacccaaacg ctcgtcacct taacgcagtt agccacgctg tctgcacttt 1800 tctacaagaa ttcgggataa gaataaattt tgataaaatg actccgtctc ccgtgacaac 1860 aattcgattt ctgggctatg aaataaatga acagtacatc caaattgaag actcaagatg 1920 gactgaatta aggactgtaa tcaaaaagat ttctgtagga aaatggtatg attggaaatg 1980 tattcaaaga cttataggac acattcaatt tgtattacca tttactaaag gaaattctga 2040 aatgttaaaa cctatgtatt tagcagtcaa ggaacaggtt aatttttctt tttcttctag 2100 gtataggaat ttgttgtata aattaactat gggtgtttgt aaattaactt tgaatccaaa 2160 ggtctcttta cctttgccac gcgtagccgc tgatgctacg ttaacgcatg gcgcaatatc 2220 ccatatcacc ggcgggaccg cagtgtttac tttttcaaag gtcagagata ttcgtgtaca 2280 ggaattgtta atgagttgct tagccatgtt aatgattaaa ccacgctgtt tgctttctga 2340 ctcaaccttt gtgtgtcaca agaggtacat gacgttgcca tggaattttg ctgtcctcag 2400 caaacaatta ctgggcaaag ttcctattta ctatgtacct agcaaatata atcctgctga 2460 cggcccaacc aggaagaaac ctcctgattg gacggccctt acatacaccc ctctctcgaa 2520 gactccatat ataccacata ggctatgtgg aggttaagat tacacccctc tccattcgga 2580 gctgtatgcc aaggtatctt tacgtcttgc ttgctgttgt ctgcattgac tgtaccttcg 2640 gtatgtacaa ttgtttatga ttattgctta tatatggatg ctaatgtttc tagagctctt 2700 agtaacatat atgatctgcc agatgatttc tttccaaaaa ttgatgatct tgtaagagat 2760 gctaaagatg ctttagaacc tttttggaaa actgattcaa taaagaaaca tgttatcatt 2820 gctacacatt ttgtggatct tattgaagat ttttggcaga ctacgcaggg tatgaatcat 2880 gtggctgagg ccttagtatc cttgattcct cctactactg tggcagttcc tcaaggatat 2940 ctaacgactc acgaagaagc ggaagagatt cctcttgatg gtttattcaa ttatcaagag 3000 gaacgtattg ctagctacca acctgattat cctgttcctg cacgtatt 3048 //