ID JN560178; SV 1; linear; genomic RNA; STD; VRL; 8877 BP. XX AC JN560178; XX DT 03-JAN-2013 (Rel. 115, Created) DT 11-JUN-2013 (Rel. 117, Last updated, Version 2) XX DE Tomato yellow ring virus isolate TYRV-t segment L, complete sequence. XX KW . XX OS Tomato yellow ring virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes; OC Bunyavirales; Tospoviridae; unclassified Tospoviridae. XX RN [1] RP 1-8877 RX DOI; 10.1007/s11262-013-0880-8. RX PUBMED; 23334441. RA Chen T.C., Li J.T., Fan Y.S., Yeh Y.C., Yeh S.D., Kormelink R.; RT "Molecular characterization of the full-length L and M RNAs of Tomato RT yellow ring virus, a member of the genus Tospovirus"; RL Virus Genes 46(3):487-495(2013). XX RN [2] RP 1-8877 RA Chen T.-C., Fan Y.-H., Yeh Y.-C., Li J.-T.; RT ; RL Submitted (04-AUG-2011) to the INSDC. RL Biotechnology, Asia University, 500, Lioufeng Rd., Wufeng, Taichung 41354, RL Taiwan XX DR MD5; d655184f5a13aa7351e77afacb65cc4c. DR EuropePMC; PMC4818514; 27038777. XX FH Key Location/Qualifiers FH FT source 1..8877 FT /organism="Tomato yellow ring virus" FT /segment="L" FT /host="tomato" FT /isolate="TYRV-t" FT /mol_type="genomic RNA" FT /country="Iran" FT /collected_by="Hassani-Mehraban" FT /collection_date="2002" FT /db_xref="taxon:304859" FT CDS 33..8654 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="L protein" FT /db_xref="GOA:K9L2Q0" FT /db_xref="InterPro:IPR007099" FT /db_xref="InterPro:IPR007322" FT /db_xref="InterPro:IPR015841" FT /db_xref="UniProtKB/TrEMBL:K9L2Q0" FT /protein_id="AEX09314.1" FT /translation="MNLQNVHSFLDITGQITVFLNDLREKLMILSNVIQTKYKDGSDAV FT SSGLKAIMSMSCVIDEIVDMKATYYQSTMSIDQKEMEKKIFIFIDKYKELELMRHDLFG FT VLASSKLHFAPKHRHDVVMKDCILSYLEYCSVKQDISNKITDLDSITSQLVFQHQTPDN FT YVIYKETTGEKACLMIYDWKVSVDTMTENKTSENYYTGIWKTFKDIKIDGEPFLSKFPI FT FVTIVVLQPMNFMPIVATTCRVLEEMRNSPYRTFVDRRNAALRTKLISSRDLRDLGGHD FT GSKLVGFYSECQAFKNLLMSNIGDYMNRTDEVFFSNWSFEYKDTTLKDNLMSQDVVEII FT KSLPNDTIKNDLMIHFIFGNYVFYYKTMSDLHRKDKFEGYKSNCKLLKVKPKKTEEELK FT VYLEDNEVLFESLYSKHMDKIKTDMIMKKSQEKEIKSIEESFNINAENYQAEYPGCFTN FT DLQQTKTNFSVCWSPSTEKLHVGEMNFNNSIIENFRKCFDDEETLIHNKSYGGKNGQGE FT FSNTLFRLVKACIKSLSCDTTGQSKIRAEDVVDIKDGSIKISRESKEKSWKEIGNIKTR FT NGNEFTIGEKANKEVKSDFFKGLTIMNIDMGKRKKNDHKLKLMEKLKESRVANEESQMK FT EGEYDVSSNMEVINMPLGSISHNKKLIRHDNPDVKYWCNSMIQSMYALHGFDTRGKESG FT KINSVYSEYCNDPGKVFSKGKLIETEMNISRNLHKVSQSLAVYSYSEDMMQIAKGLMVA FT DRFMRKTDFKILTCANTSMICLAFKGDGLNTGKSGVPYITLHKISELLQPYFVSLYTKE FT LVVSFKSGDHYVNIMRPQRLNQVRLLSLFKAPSKVPICFSQYCLLSTEVKRWISKKTID FT LLECPSNLLPFLKNILFSSVVIGTVTKLSRMGIFDFMRHAGFLPLSDYSNIKEYIAEKF FT DPDITNVVDCYFVSGIKNLLLKMEGINLSNSIKPLTIDQENDMSGGINDLNIICPITGS FT TLRTIECLYNNVYLAIYMMPKSLHTHIHNLTSLLNVPAEWEVKFRTKMGFGLDEEIVPK FT KEMFNDSGPFSIDGSLNVKTLFDYYLKTVDNVSSTRSNIESKEDFLSTPYKIKTLTSSK FT KCSKAEIIKNSEIKQCLSNCLGRDPEKINGKDEHILKGVLKCFVEDKDALRNFMTLEDL FT DESEYFHYFTMLTSGENKTLIKTSYDKFYSNSHPTTVETFIKVRYGHMSTTTVLKSKKV FT SEELYDLIKEYNKITNLDLDALENLGRGLSGSKMTFMQLLEFVLLKTRTNAGNTDFLVS FT VFEKMQRTKMDREIYLMSMKTKMMLYFIEHTYKHVAQSDPSEAISISGDYKIKTLASLS FT YDTITNYNTALQKGLECKMAFLSADQSKWSASDLTYKYILAVLMNPVLTTGEINMMCEC FT ILMYVKLKRVCIPTDVFLNLKRGQATYGSYGTAISSLTNNLETNTFPVSMNWLQGNLNY FT LSSVYHSCAMLGYEKALKTNQDFEFTVRWMVHSDDNATSVVVKGDMERFLSKFNCSNLS FT EFLFRSIQSHFKSYCITLNPKKSYASESEVEFISERIINGAVIPLYCRNLANCCTESSH FT NSYFDDLMSLSIHITMLLRKGCPNELITFAYSAIQCQALSIYSMLPGEENDIVSIGKEV FT GFPLTKEEIPTCAGGWMRAPVEMLSILGPSSNDQYIYYKILLEFFKQKDFSSLKAQVNS FT LGYVPLRINELNKRIARDALTKEDVKMICMVNLFKTSLMSEDSDSLSIGMKFQTMMTQI FT IKLPSYVSESSLMKNSSFQDFCKLFPNLKKNSDLLKSLKKNQIDEDGIDDLAEDDSMLS FT RIQMEELYKHMSKHPEALLIAPMNDKDYILTNLYMYSSISKRNQMSNQSTEKLALDRIL FT RSKAKTFVDPNSKQMMTYKENMLSKLKEIMDKSANDYKIISTISDMMVKDMNFEMIISL FT MENSVANASIPKANYNFRWFVTEKVPSIIEGSPGLIVMSAIYGMEYLVELGLKRLPLTE FT NSICILHDVFGNRKTFDDVKNYLTSKNSEMKTEEFILADDLKRGVLSLNYMIQSQNKLL FT SLNTCFSRKNFPFYSKYNLGKTFITNTLALWSTIYSRTTNINFYTNLNFVIDRNSRMIV FT SLQRDMSLEKLLDCCAYVSDRVQSLFPDMEIEDIRNILSKLNFNSINLLQKATSELKSV FT KRAISQIKTASHVTLSYRPQLMAMSKYAAWLYNFGYINEREFKFVIEQVRQSEVNYIKT FT DEQDTRGFYVSGISYKIGIKTLHNYAQLEMTNRDIAIHLNSPYEFIREEDNRMWDTHVK FT SVYKLLQKLLIDKQSVLKTFLNMKVDVMPNEFCIHESSQKNLLIYINETNRVVTLDKVK FT FKGKVKYNFSNNFTWSLMENNYNYMLRKAETGECFSELYKTIDSGSNLIENILKNLKSS FT LIFNSEMENMLSKAVEGIEDEENKDIFVDSLKQIYDIAYKGLKECKSSEEFETYLKENE FT FENLVEMQKEMLEVICQDLSDTDSRIQSVVDKLRVWSNNLSNFGDLCVMLKFSMVNDSK FT GIRTYKANGIDFHSLSASESIICSDYDVFEMLKLIKACEACHTSNSTLNLIAFRDIKNN FT KYVNPYRRRFGGSVYFYYPLKLNNDVMSKFYEHKTISLSDVEITESVRDILKQNGFTVT FT GSNVKLESDMLELNPVLVTDEHSTFDTVSRQMRLTKKKSSYLVPANTLLLGELMKFLML FT CIKGNEYDVQKMLSAHFDFTIERDDRMDSLIKSIMTLRASGYVQRYFTNTKEEEILLGA FT AASLENFMILSTPCGEFSEPFDVQKLIKNSLSEKNKDKKLKILLRIRSYISSKLDYLND FT QCIYKNTTSLEISDLIFSSINHIDREISELRSFDKTVYHDEFNEYLKDTEEANSD" XX SQ Sequence 8877 BP; 3272 A; 1385 C; 1654 G; 2566 T; 0 other; agagcaatcg agcaacgaaa ttaaaatcca caatgaatct tcaaaatgta cacagcttcc 60 tagatattac aggccaaatt actgtctttc taaatgattt aagagagaag cttatgattt 120 tatcaaatgt tatacaaaca aaatataagg atggatcaga tgctgtctct tcaggtctca 180 aagcaataat gagcatgtct tgtgtcattg atgagatagt tgatatgaaa gctacttatt 240 atcaaagcac aatgtctata gatcaaaagg aaatggaaaa gaaaatattt atcttcatcg 300 ataaatacaa agaacttgag ctaatgagac atgatctctt tggagttttg gcaagctcaa 360 aattacattt tgcaccaaaa cacaggcatg atgtggtaat gaaagactgc atcttaagct 420 atctggaata ctgctctgtg aagcaggata tcagtaacaa gataacagat ctggatagta 480 taacctctca gctggtgttt cagcaccaaa ctccagacaa ctatgtcatc tacaaagaaa 540 caacagggga gaaagcttgt ttaatgatat atgactggaa agtttctgtt gacactatga 600 cagaaaacaa gacatctgaa aattattaca caggtatatg gaaaacattc aaagatatca 660 aaattgatgg agaaccattt ttatctaaat tccccatatt tgtcaccata gtggtacttc 720 aacctatgaa tttcatgccc attgtagcaa caacttgcag agttttagaa gagatgagaa 780 attctcctta caggacattc gttgacagga gaaatgctgc attgagaact aaactgatct 840 cttccagaga tctgagagat ttagggggtc atgatggttc taagcttgtt ggattttatt 900 cagaatgcca agcatttaaa aatcttttga tgtctaacat aggagattac atgaatagaa 960 cagatgaagt gtttttcagt aactggtcat ttgaatacaa ggatactact ctaaaagaca 1020 atttaatgag ccaagatgtt gtagagatca taaaatcttt acctaatgat actataaaga 1080 atgatttgat gattcatttt atcttcggca attatgtctt ttactacaag actatgagtg 1140 atctgcatag aaaggataaa tttgagggat acaaatccaa ctgcaagtta ctcaaagtca 1200 aaccaaagaa aacagaggaa gaacttaaag tgtatttaga agacaatgaa gtattattcg 1260 aaagtctata ctcaaaacac atggataaga taaagacaga catgataatg aagaaaagcc 1320 aggaaaaaga gattaaatcg atagaagagt ccttcaatat aaatgcagaa aattatcaag 1380 ctgaatatcc aggctgtttt acaaatgatc ttcaacaaac caaaaccaat ttttctgttt 1440 gctggtctcc ttctactgag aaactacatg tcggagaaat gaattttaat aacagcatta 1500 ttgaaaactt cagaaaatgc tttgatgatg aagagactct catacataac aaaagctatg 1560 gagggaagaa tggtcaagga gagttttcta acacattgtt taggctagtg aaagcatgca 1620 taaaaagctt gagctgtgac accacaggac agagcaaaat tagagctgaa gatgttgttg 1680 atataaaaga tggtagtatc aaaatatcaa gagaaagtaa agaaaaaagt tggaaagaaa 1740 ttggaaacat taagaccaga aatgggaatg agtttacaat tggtgaaaaa gccaataaag 1800 aagtcaaatc agacttcttc aaaggtttga ccataatgaa cattgatatg gggaagagaa 1860 agaaaaatga tcataagtta aagcttatgg agaagttgaa agagtccaga gtggctaatg 1920 aagaatcaca gatgaaagaa ggtgaatacg atgtttcatc taacatggaa gttataaaca 1980 tgcctttggg ctcaatctcg cacaataaaa aactcataag acatgataat ccagacgtga 2040 aatattggtg taattcaatg atacaaagca tgtatgcatt acacgggttt gatacaagag 2100 gcaaagagtc agggaaaatt aattcggttt attcagaata ttgtaatgat cctgggaagg 2160 ttttttctaa agggaagtta attgagactg aaatgaacat ttcaagaaac ctccacaaag 2220 tttctcaatc tctggcagtg tattcataca gtgaagatat gatgcagata gcaaagggtt 2280 tgatggtggc agacagattc atgagaaaaa cagatttcaa aatcctgaca tgtgccaaca 2340 ccagcatgat ttgcttagca tttaaaggag atggcttaaa cacagggaaa tctggagtcc 2400 catacataac gttgcacaaa atttcagaac tactccaacc atattttgtt tcattatata 2460 caaaagagtt agtggtgtct tttaaatctg gcgaccatta tgtcaatatt atgagaccac 2520 agcgactaaa ccaggttaga ttgcttagcc tttttaaagc ccctagcaaa gtacctatct 2580 gtttttcaca gtactgtctt cttagcacag aagttaagag atggatttct aaaaaaacca 2640 tagatttgtt agaatgtcca tccaatctgc ttcccttttt gaaaaacata ttgttttcgt 2700 ctgttgtgat aggtacggta acaaagttaa gcagaatggg aatttttgat tttatgaggc 2760 atgcagggtt tctcccgctg tctgactact caaatataaa agagtatata gcagaaaagt 2820 ttgatccaga tataactaac gttgtggatt gctattttgt ctcaggcata aaaaaccttc 2880 ttttgaaaat ggaaggtata aacttgagta acagcataaa accgctgacc atagaccagg 2940 aaaatgacat gtctggaggt ataaatgatc taaatattat ctgccctata acaggatcaa 3000 ccctaagaac catcgagtgt ttgtacaata atgtgtattt ggctatatac atgatgccaa 3060 aatctctcca cactcacata cacaatttaa catcattgct gaacgtccct gcagaatggg 3120 aagttaaatt ccgaaccaaa atgggctttg ggctagatga ggagattgtg ccaaagaagg 3180 agatgttcaa tgattctggt cccttttcaa ttgatggatc cctaaacgtg aaaactcttt 3240 ttgattatta tctaaaaact gtagacaatg tgagctcaac acggtctaac atcgaatcta 3300 aagaagattt cctctctacc ccatataaaa tcaaaacttt gacatcttct aaaaagtgtt 3360 ctaaagctga aataataaaa aactctgaaa taaagcaatg cttatctaac tgtttaggca 3420 gagatccaga aaaaattaat gggaaagatg aacacatcct gaagggagtc ttaaaatgct 3480 ttgtagaaga caaagatgct ctcagaaact tcatgacact agaagatttg gatgaatctg 3540 aatatttcca ttatttcact atgctcacat ccggagaaaa taaaacattg ataaaaacta 3600 gttatgacaa gttttacagt aacagccacc ctacaacagt ggaaacattt attaaagtta 3660 gatatggtca catgtctaca actacagtgc tcaaatcaaa aaaggtaagt gaagaacttt 3720 atgacttgat aaaagaatac aataagatca ctaatctaga tctagatgca ttagaaaatt 3780 tgggtagagg tttgtcaggc agtaaaatga cttttatgca attgctggaa tttgtccttc 3840 ttaagaccag gacaaatgcc gggaacacag actttttagt ctctgttttt gaaaaaatgc 3900 agagaaccaa gatggatagg gaaatctatc taatgagcat gaaaaccaaa atgatgttat 3960 atttcataga acatacatac aaacatgtag cgcaatctga tccttctgag gccatatcta 4020 tatctggtga ttataaaata aaaacacttg cttcgttgtc ttatgacacg ataaccaact 4080 ataacacagc tttgcaaaag ggcttagaat gcaagatggc ttttctttct gctgaccagt 4140 ctaaatggtc tgcctctgat ttaacataca aatatattct ggcagtctta atgaatccag 4200 tgctcacaac aggagagatc aacatgatgt gtgaatgcat actaatgtat gttaaattaa 4260 aaagagtctg catacccaca gatgtcttcc tcaacctaaa aagagggcaa gccacatatg 4320 gctcctatgg aactgctatt tcgtctttaa caaacaattt agaaacaaat actttccctg 4380 tgtctatgaa ctggctccaa ggaaacttaa attatctatc ttcagtctac cattcatgtg 4440 ctatgctggg ttatgaaaaa gcattgaaaa ctaatcaaga ttttgagttc acagtgagat 4500 ggatggttca ttcagatgac aatgcaactt ctgttgtagt taaaggagat atggaaaggt 4560 ttttatcgaa gtttaactgc tctaacttat ctgaattcct gtttagaagc atccagtctc 4620 attttaagag ctactgtata actttaaatc ctaaaaagag ctatgcatct gaatctgaag 4680 tggagttcat atctgagaga ataataaatg gtgctgttat acctctgtac tgcaggaatt 4740 tagctaattg ttgcactgag tcatcgcaca atagctattt tgacgatttg atgtcattat 4800 ctatacacat tactatgttg ttgagaaagg gttgtccgaa tgaacttata acatttgcat 4860 attcagccat acaatgccaa gcacttagta tctattcaat gcttcctgga gaagagaatg 4920 atatcgtttc aatagggaaa gaggtgggat tccctttgac aaaggaagaa atacctacat 4980 gtgctggagg gtggatgaga gcaccagtgg aaatgttatc tattttaggt ccttcttcca 5040 atgatcaata tatttattac aaaatattac tagagttttt caaacagaaa gatttttcat 5100 cactcaaagc tcaagtgaat agcttgggtt atgtgccatt gagaatcaat gagctgaaca 5160 agagaatagc aagagatgca ctcaccaaag aagatgtcaa gatgatttgc atggtaaacc 5220 tatttaagac tagcttaatg tctgaagaca gtgatagttt aagcataggg atgaagttcc 5280 aaacaatgat gactcagata ataaagctac ctagttatgt cagtgagagt tcattgatga 5340 agaattctag cttccaagat ttttgcaaac tattccccaa tctaaagaag aattcggatt 5400 tactaaagtc cttaaaaaag aaccagattg acgaagatgg cattgacgat ttggctgaag 5460 acgattcaat gctttcaaga atccagatgg aagaattgta taaacatatg tcaaaacacc 5520 ctgaagccct tttgattgct cctatgaatg acaaagatta tatactcact aacctttaca 5580 tgtatagtag cataagcaaa aggaaccaga tgtctaatca gtctacagaa aagttggcat 5640 tggatagaat actaagatct aaagcaaaaa cttttgttga tcctaactct aaacagatga 5700 tgacctacaa agagaacatg ctatcaaaat tgaaagaaat tatggacaag tctgccaatg 5760 attacaaaat tatttctacc atatctgata tgatggtaaa ggacatgaat tttgagatga 5820 taatatcttt gatggaaaat tcagttgcaa atgcatcaat tcctaaagca aattacaact 5880 tcagatggtt cgtcacagaa aaagtgccta gtataataga gggatcgcct ggattgattg 5940 taatgtccgc aatatatgga atggaatatc tagtggaact gggattgaaa agattacctt 6000 taacagaaaa ctcgatctgt attttacacg atgtgttcgg taatagaaaa acgtttgatg 6060 atgtaaagaa ctatttgaca tctaagaatt cagagatgaa aacagaagaa ttcattctag 6120 ctgatgattt aaaaagaggg gttttgtctt taaattatat gatacaatct caaaacaagc 6180 tgctgtctct gaacacttgt ttctccagaa agaatttccc attttattca aaatacaacc 6240 tcgggaaaac ttttatcaca aatactctag cattgtggag cacaatatac agtagaacta 6300 caaatataaa cttctataca aatttaaatt ttgttattga caggaattca agaatgatag 6360 tatctttgca aagagacatg agtttagaaa aattgcttga ctgctgtgca tatgtttctg 6420 acagagtaca aagtttgttc cctgacatgg agattgaaga catcagaaat atcttatcca 6480 aactcaattt caattctatt aatttgcttc agaaagccac atcagagctt aaatctgtta 6540 aaagagctat atctcaaata aaaactgcaa gccatgtgac tctgtcttac agaccacagc 6600 ttatggctat gagcaagtat gcagcatggt tgtacaactt tggttatatc aatgaaagag 6660 aatttaaatt tgtgattgaa caagttagac aaagtgaagt aaactacatt aaaactgacg 6720 aacaggatac ccgagggttc tatgtctctg gtatctcata caaaataggg atcaagactt 6780 tacacaatta tgctcagttg gaaatgacaa acagagatat agcaattcat ttgaattcac 6840 catatgaatt tatcagagaa gaagataata gaatgtggga cacacatgta aaatctgttt 6900 acaagctttt acagaagctt ctgatcgata aacagagtgt tttaaagact tttttgaaca 6960 tgaaagttga tgtgatgccg aatgagtttt gcatacacga aagctctcaa aagaatttgt 7020 tgatatatat aaatgagact aatagagtag tcacattaga caaggttaaa ttcaaaggaa 7080 aggtaaaata caatttttcc aacaatttca catggtctct catggagaac aattataatt 7140 acatgctaag aaaagcagaa actggagagt gtttttcaga gttgtataaa acaatagata 7200 gtggaagcaa cttgatagaa aatatattga agaatcttaa gtctagccta attttcaatt 7260 cagaaatgga gaacatgctc tcgaaagccg ttgaaggaat agaagatgag gaaaacaaag 7320 atatttttgt agattctctc aaacaaattt acgatatagc ttacaaaggg ctgaaagagt 7380 gcaaatcttc agaagaattt gagacatatc tgaaagaaaa tgaatttgag aatttagtag 7440 aaatgcagaa agaaatgctg gaagtgatct gccaagacct ttctgacaca gattccagga 7500 tccaatcagt ggtagacaaa ctgagagtgt ggtcgaacaa tctgtcaaat tttggagatc 7560 tatgtgtgat gctgaaattt tctatggtaa atgattcaaa agggattaga acttacaaag 7620 caaatggcat tgatttccat tctctttctg ctagcgagtc tataatatgt tctgactatg 7680 atgtatttga aatgttaaaa cttataaaag cttgtgaagc ctgtcacacc agcaattcta 7740 ccttgaactt aatagctttt agagatatca aaaacaataa atatgttaat ccatacagaa 7800 ggaggtttgg agggagtgtg tacttttatt acccattgaa gctcaataat gatgtcatgt 7860 caaaatttta tgaacacaag acaatttcat tgagtgatgt agagataaca gaatctgtaa 7920 gagatattct gaaacagaac ggcttcacag taactggctc gaatgttaaa ttggaatcag 7980 acatgttaga gcttaaccct gttttggtca cagatgagca tagcaccttt gatactgtct 8040 caaggcaaat gagattgaca aaaaagaaaa gttcatatct agtgccagcc aacactctcc 8100 tacttgggga gttgatgaaa ttcctaatgc tatgtataaa agggaatgaa tacgatgtcc 8160 aaaaaatgct cagtgcccat tttgatttca caatagaaag ggatgataga atggacagtt 8220 taataaaatc tataatgaca ctgcgtgcta gtgggtatgt tcaaagatac ttcactaata 8280 ccaaagaaga ggaaatactc ttaggagcag ctgcaagctt agaaaacttc atgatattat 8340 caacaccatg tggagagttt tcagaaccct ttgatgtgca aaaactaata aagaactctt 8400 tgtccgagaa aaacaaagac aagaagttga aaatacttct taggataagg tcatacatat 8460 catctaaatt agattatcta aatgatcagt gtatatacaa aaacacaaca agtctagaga 8520 taagtgattt aatatttagt tctataaatc atatagatag agaaatttca gaactaaggt 8580 cttttgacaa aactgtttat catgatgaat tcaatgaata tctcaaggat actgaagaag 8640 caaattctga ttagagctta tggcaatagt aatagtatta cattgttaac atagttatag 8700 actaatgaca gacctggaaa atataaaaga atagtacatt tataaagttg ataagttgct 8760 tgaagatgaa agtcaataag caacaaaaca gtggagaagc ctaaattagt atttctgaag 8820 acatttttca tgattcagca tagctgaaga agttataatt tgttgctcga ttgctct 8877 //