ID JN560177; SV 1; linear; genomic RNA; STD; VRL; 4786 BP. XX AC JN560177; XX DT 03-JAN-2013 (Rel. 115, Created) DT 11-JUN-2013 (Rel. 117, Last updated, Version 2) XX DE Tomato yellow ring virus isolate TYRV-t segment M, complete sequence. XX KW . XX OS Tomato yellow ring virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes; OC Bunyavirales; Tospoviridae; unclassified Tospoviridae. XX RN [1] RP 1-4786 RX DOI; 10.1007/s11262-013-0880-8. RX PUBMED; 23334441. RA Chen T.C., Li J.T., Fan Y.S., Yeh Y.C., Yeh S.D., Kormelink R.; RT "Molecular characterization of the full-length L and M RNAs of Tomato RT yellow ring virus, a member of the genus Tospovirus"; RL Virus Genes 46(3):487-495(2013). XX RN [2] RP 1-4786 RA Chen T.-C., Fan Y.-H., Yeh Y.-C., Li J.-T.; RT ; RL Submitted (04-AUG-2011) to the INSDC. RL Biotechnology, Asia University, 500, Lioufeng Rd., Wufeng, Taichung 41354, RL Taiwan XX DR MD5; b2352c0ffdc2081c72d8ff65138c85ed. XX FH Key Location/Qualifiers FH FT source 1..4786 FT /organism="Tomato yellow ring virus" FT /segment="M" FT /host="tomato" FT /isolate="TYRV-t" FT /mol_type="genomic RNA" FT /country="Iran" FT /collected_by="Hassani-Mehraban" FT /collection_date="2002" FT /db_xref="taxon:304859" FT CDS 63..989 FT /codon_start=1 FT /product="NSm" FT /note="movement protein" FT /db_xref="InterPro:IPR000603" FT /db_xref="InterPro:IPR006889" FT /db_xref="UniProtKB/TrEMBL:K9L2G0" FT /protein_id="AEX09312.1" FT /translation="MSRITNVFENFMKNDNKELIPAVKTTDSENRLALSRKVTKKDVDA FT AMKNKASTFNGNQYISSSDSTVLGSYEDGKSIENSSDDILSRLIVEKSTHLSNWKDDSL FT VGNGDDKVSCTINIIPTWDSKRKYMHLSRLIVWVVPTIPDSKGFVKATIIDQNKMTPKE FT RLIIGKQGTLENPLCFVFHLNWSFNKDRNVPKRCMQLNLTSNEKYAKGVSFASVMYSWV FT KNFCDTAIASDSNTCDVIPINRAKAIRSAALIEACKLMIPKGTTGKAIKNQITSLQKIA FT EKVALEEDAEESTDVLEIEIDNLDDQF" FT CDS complement(1344..4736) FT /codon_start=1 FT /product="envelope glycoprotein" FT /db_xref="GOA:K9L2C2" FT /db_xref="InterPro:IPR005167" FT /db_xref="InterPro:IPR014414" FT /db_xref="UniProtKB/TrEMBL:K9L2C2" FT /protein_id="AEX09313.1" FT /translation="MNRHYLLLYCLGVYLMFTITEVLLMNHAEDHEDTKVELKKLRDRY FT KIDDPEDLIEDRVVDTGFSFPPLDPKVPERNTRDATTNVPSTANSQGIESLSCEDFEKA FT NCIIKGTSDFNAHYQIKSSNSVLACITDSEKIFDACFFDSDIKRRTFFKMPVVPVLKLE FT NKRVLEVGSKFFFVDSSNDPILSDPKSGMINPTVSRLSVRLSGDCIISQVSMSSPYMIK FT MKSTENIGFAVKNIKDPQAMNFQTVSGDRSVYFKIDELDGNHFFLCGDKSSFIKKVDVP FT VRNCVSKYADEPKKIFFCTNFSYFKWIFTFLMIAFPVTWMLWKTKKALSIWYDVIGILT FT YPILIVINYFWIYFPFKCRSCGNLSFLSHECSKLCVCNQSEPSKEHAKECCLFSKDTKE FT WKSLSLIDHFQFTVNTKISSEFLVFLTKMLIASILISYIPSSLALSIEKNVCVEKCFYS FT RDLEKLTTDKDGSAKNAVDTCECSIGDLITETVYRGGTPISRATTKNDCVSSSYACLTS FT LNQAKNLFACRNGCHALSTLEKIPKVKYSKGYKGVEYSGNLTILKIANRLRQGFVDSQS FT EAKILESKVSKELSYFNSLKIDDIPPESLMPRQSLVFSTEVDGKYRYMIEMDIKKETGS FT VYLLNDDSSHIPIEFMIYVKSVGVEYDIRYKYSTAKVDTTVTDYLSTCTGNCKDCQNSK FT APSGHNDFCIQPTSWWGCEELGCLAINEGAICGHCTNVFDLSTLVNVYQVVQSHVTAEI FT CIKSLNGYDCRKHTDRAPIQTEYYQLDMTVDLHNDYMSTDKLFAVTKQQKVLTGSISDL FT GDFSSGAFGHPQITINGTPLAVPATISRDQFTWSCSAVGSKSVNIKQCGLFSYNMIYAL FT TQSKDFSTIKEDKNKLYMTKDFLVGKLKVIIDMPKEMFKKPPSKPMLSETKITCSGCSK FT CAMGLECNMEYTSDTTFSSRIEMDGCSFKSDQIGSYVGPNKKTIKAYCSDSIKDKTIKM FT IPEDQEELSTELKIDQVDVVDQDTIISYDDKSAHDENIHHADTGIATLWDWVKAPFNWV FT ASFFGSFFDVVRVVLVISAVLVGLYIVNYIYKLSFSYYKEKRKRKMELDLEEVTESLLT FT KSKRDGEPRRRSPPKTFEFPLEF" XX SQ Sequence 4786 BP; 1562 A; 878 C; 842 G; 1504 T; 0 other; agagcaatca gtgcgtcaat taagaatcta aaacaacttc agccaattga atagtaacca 60 gtatgtctcg cataactaac gtgtttgaaa actttatgaa aaatgataac aaagaattaa 120 ttcctgctgt caagaccact gattcagaaa acagacttgc tttgagcaga aaagtgacaa 180 aaaaagatgt tgatgctgct atgaaaaaca aagcctcaac attcaatggc aatcagtata 240 tttcatcatc agattctaca gtgttggggt cgtatgaaga tggcaaatcc atcgaaaata 300 gttcggatga catcttatct aggcttatag tagaaaaaag cactcatttg agcaattgga 360 aagatgattc ccttgttggc aatggggatg ataaggttag ttgcactata aacataatcc 420 caacatggga tagcaagagg aagtacatgc acttgtcaag attgattgtc tgggtggtcc 480 ccacaatacc agattccaaa ggatttgtca aagcaactat catagaccaa aacaaaatga 540 cacctaaaga aagactgatt attggtaagc aaggaacact agaaaaccca ctgtgctttg 600 ttttccatct gaattggtca ttcaacaaag acagaaatgt cccaaaaaga tgcatgcagc 660 ttaatttaac aagcaatgag aaatacgcta aaggtgtttc ttttgcatca gtcatgtact 720 cctgggtaaa gaatttctgt gacacagcta tagcttcaga cagcaacacc tgtgatgtca 780 taccaatcaa cagagcaaaa gcaatcagat cagctgcctt gatcgaggca tgcaaactca 840 tgattcctaa aggaaccaca ggaaaagcca taaaaaacca aatcacatct ttacaaaaga 900 ttgccgagaa ggtggcacta gaagaagacg cagaagaaag caccgatgtc ttggagatcg 960 aaatagacaa tctcgatgat caattttaac taagatatta gtgtttaatg gatcttatgt 1020 gtgttttatt atatctgtgt gttttaagca aattataaat aatgaaataa aaacaacaaa 1080 agagaagaaa attatttata tatataagca tgtttgtgtt tgccttttac gcagataaat 1140 taaaccaaca aaaaaagaaa agaaaaagaa aagaaaagaa aagaaaaaac aaacaaaaaa 1200 caaaaaagaa aaagaaaaga aatgtgtata aataaggcca aggccaattt tggcctgttt 1260 aaggctctct ttttttgttt ttattgtttt atttattttt atttgtttat ttagtttatg 1320 ttacaaaaat tagcatttta cagctaaaac tccagtggga attcaaatgt ttttggtgga 1380 cttctccttc taggttctcc atctctctta gatttggtta aaagtgattc tgtaacttct 1440 tctagatcca attccatctt tctttttctt ttttctttat agtaactaaa tgacagttta 1500 taaatgtaat tgactatgta taaaccaaca agaacagctg aaataaccaa aactactcta 1560 actacatcaa agaagctgcc aaagaacgat gctacccagt tgaaaggagc tttcacccaa 1620 tcccacaatg ttgctattcc tgtatcggca tgatggatgt tttcgtcatg agcactttta 1680 tcatcatagc tgattatagt atcttgatct acgacatcaa cttgatctat ctttagttcc 1740 gttgataact cttcttggtc ttcaggaatc atcttgatgg ttttatcttt tatgctgtca 1800 gaacagtatg ctttgattgt tttcttgtta ggaccaacat aactgcctat ttggtctgat 1860 ttgaaagaac aaccatccat ctctattcga gaagagaatg tagtatcaga agtatactcc 1920 atattacact ctaaacccat agcacactta gaacatccag aacaggtgat ttttgtttca 1980 ctgagcatgg gcttgcttgg tggcttttta aacatctctt ttggcatgtc aatgatcacc 2040 ttcaatttgc ctacaagaaa atctttagtc atatacagtt tatttttatc ttcctttatg 2100 gtagaaaaat ctttagactg tgtcaatgca taaatcatgt tgtaactgaa tagcccacat 2160 tgcttgatat taaccgattt tgagccaact gcagaacagc tccatgtaaa ttgatctcta 2220 gatatggtag ctggcacagc cagtggtgtc ccgtttatag ttatctgagg atgtccaaaa 2280 gcacctgaag agaaatcacc taaatcagat atactccctg taagaacttt ctgttgttta 2340 gttacagcaa acagcttgtc tgtgctcata taatcattat gaagatctac agtcatgtct 2400 aactgataat attctgtttg tataggagct ctatctgtgt gctttctaca atcataacca 2460 ttaagagatt taatgcatat ttcagcagtg acatggcttt gaacaacttg gtaaacattg 2520 accaatgtgc tgagatcaaa aacgtttgtg cagtgaccgc agatcgcacc ttcgtttata 2580 gcaaggcaac ctaattcttc acaaccccac caagatgtcg gttgtataca aaagtcattg 2640 tgtcctgaag gagccttgga gttctggcaa tctttacaat taccagtgca agtggacaag 2700 taatctgtaa cagtggtgtc tacttttgct gtagagtatt tatatcgaat atcatattct 2760 acaccaacac ttttcacata aatcataaac tctataggta tgtgagagct atcatcattt 2820 aaaaggtaaa cagaacctgt ttctttcttt atatccattt ctatcatata cctatatttc 2880 ccatcaactt ctgtcgaaaa caccagggat tgtctaggca ttaagctttc tggaggaatg 2940 tcatctatct taaggctatt gaaatatgat aattctttag aaactttgga ttccagaatc 3000 ttagcctcgg attggctatc aacaaatccc tgcctgagcc tattagcgat ctttaaaata 3060 gttaggttgc ctgaatattc aaccccttta tagcctttgc tgtacttaac tttaggaatt 3120 ttctccaatg ttgacaaagc atgacaacca ttcctgcatg caaacaaatt tttagcctgg 3180 tttagactgg ttaaacatgc ataagatgat gaaacacaat cattttttgt ggtggctctt 3240 gatattgggg ttcctcctct gtaaacagtt tcagttatca aatctccaat tgagcattca 3300 catgtgtcaa cagcattttt tgctgaacca tccttatcag tagttagctt ctctagatcc 3360 cggctgtaaa agcatttttc cacacaaaca ttcttttcta tggagagtgc aaggctagac 3420 ggtatgtaag atattagaat gctagctatc agcatttttg taaggaagac aaggaactct 3480 gaactgatct tggtattgac agtgaactga aaatggtcta ttaatgatag acttttccat 3540 tctttggtgt ctttagaaaa tagacaacat tcttttgcat gctcctttga cggctcgctt 3600 tgattgcaaa cacaaagttt tgagcattca tgtgaaagaa aagataggtt accgcaggat 3660 ctacacttga atggaaagta gatccaaaaa taattgataa cgatgagtat aggataggtc 3720 aaaatcccta tgacgtcata ccatatagag agagcttttt ttgtcttcca aagcatccat 3780 gttacaggga aagctatcat caggaaagta aaaatccatt tgaagtaaga aaaattggtg 3840 caaaaaaaga ttttctttgg ttcatcagca tacttagaaa cacagttcct cacagggaca 3900 tcaactttct ttatgaagct tgatttgtct ccacagagaa agaagtgatt accatctagc 3960 tcatctattt tgaagtacac agatctatct ccagataccg tttggaaatt catagcttgg 4020 ggatctttta tgtttttcac tgcaaatcca atgttttctg tggatttcat cttaatcata 4080 taaggcgatg acattgagac ctggctaatg atgcaatcac cagaaagcct tacagaaagc 4140 ctggacactg taggattaat catgcccgat tttgggtcag aaagaatggg atcattcgac 4200 gaatctacaa aaaagaattt agaaccaact tctaaaaccc tcttgttttc taactttaaa 4260 acaggaacta caggcatttt aaagaaagtt ctccttttta tatcagaatc aaaaaagcaa 4320 gcatcaaaaa tcttttcaga atctgttatg caggcaagaa ctgagttaga actctttatc 4380 tgataatgag cattgaaatc acttgtgcct ttgatgatgc aattagcttt ctcaaaatct 4440 tcacaagaga gtgactcaat cccttgtgaa ttagcagttg acgggacatt tgtagtagca 4500 tccctagtat tcctttctgg cacctttggg tccaaaggtg ggaaagagaa tcctgtgtcc 4560 acaactctat cttcaatgag atcttctgga tcatcaattt tgtatctatc tctcagtttt 4620 ttcaactcta cttttgtgtc ctcatgatct tctgcatggt tcatgagaag cacttctgtt 4680 atagtaaaca tcaagtacac acctagacag tagagtagta gatagtgtcg gttcattata 4740 ggctgcttgt atggggaagt tttttaatta ttgcactgat tgctct 4786 //