ID JN558352; SV 1; circular; genomic DNA; STD; VRL; 2725 BP. XX AC JN558352; XX DT 02-JAN-2012 (Rel. 111, Created) DT 16-JAN-2012 (Rel. 111, Last updated, Version 2) XX DE Cotton leaf curl Multan virus isolate CLCuV segment A, complete sequence. XX KW . XX OS Cotton leaf curl Multan virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2725 RA Sinha V., Kumar A., Bhatnagar D., Khan J.A.; RT "Cotton leaf curl virus infecting papaya plant in North India"; RL Unpublished. XX RN [2] RP 1-2725 RA Sinha V., Kumar A., Bhatnagar D., Khan J.A.; RT ; RL Submitted (04-AUG-2011) to the INSDC. RL School of Biochemistry, Devi Ahilya University, Khandwa Road, Indore, M.P. RL 452017, India XX DR MD5; 31e3963e93434b478390f03ab5c007aa. XX FH Key Location/Qualifiers FH FT source 1..2725 FT /organism="Cotton leaf curl Multan virus" FT /segment="A" FT /host="papaya" FT /isolate="CLCuV" FT /mol_type="genomic DNA" FT /country="India" FT /isolation_source="leaf" FT /collection_date="Feb-2010" FT /db_xref="taxon:223252" FT gene 117..482 FT /gene="AV2" FT CDS 117..482 FT /codon_start=1 FT /gene="AV2" FT /product="pre-coat protein" FT /db_xref="GOA:G9I1Y9" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:G9I1Y9" FT /protein_id="AEW67324.1" FT /translation="MWDPLLNEFPDTVHGFRCMLSVKYLQVLSQDYSPDTLGYELIRDL FT ICILRSRNYVEASCRYRHFYARVESTPASELRQPIHQPCCCPHCPRHKTTGMDKQAYEQ FT EAQNVSDVQKSGCSKGL" FT gene 277..1047 FT /gene="AV1" FT CDS 277..1047 FT /codon_start=1 FT /gene="AV1" FT /product="Coat Protein" FT /db_xref="GOA:G9I1Z0" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:G9I1Z0" FT /protein_id="AEW67325.1" FT /translation="MSKRAADIVISTPASKVRRRLNFGSPYTNRVAAPIVRVTKQQAWT FT NRPMNRKPRMYRMYRSPDVPKGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGVGLTHR FT IGKRFCVKSVYVLGKIWMDENIKTRNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNSHRDRYQVLRKWHATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1050..1454) FT /gene="AC3" FT CDS complement(1050..1454) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:G9I1Z1" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:G9I1Z1" FT /protein_id="AEW67326.1" FT /translation="MDSRTGEPITAAQATNGVYIWEVPNPLYFKILSHDNRPFTTNMDI FT LTIRIHFNYNLRKALGVHKCFLTFRIWTTLHPPTGLFLRVFKTQVLKYLNNLGVISLNL FT VIKAVEHVLYNVITQTMYVDQYSDIKFKLY" FT gene complement(1147..1599) FT /gene="AC2" FT CDS complement(1147..1599) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:G9I1Z2" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:G9I1Z2" FT /protein_id="AEW67327.1" FT /translation="MRSSSHLKDPCTQVPIKVQHREAKRRNRRRRVDLECGCSYYLSIN FT CHSHGFTHRGTHHCSSSNEWRLYLGGSKSPLFQDPQPRQPSIHDEHGHTHDQDPFQLQP FT TESSGSAQVFSNLPNLDDLTPSDWSFLKGIQNPSPQISQQSRCNLT" FT gene complement(1496..2581) FT /gene="AC1" FT CDS complement(1496..2581) FT /codon_start=1 FT /gene="AC1" FT /product="replication initiator protein" FT /db_xref="GOA:G9I1Z3" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:G9I1Z3" FT /protein_id="AEW67328.1" FT /translation="MPRALKTNAKNYFLTYPKCSLTKEETLSQLQNLHTPVNKKYIKIC FT RELHENGEPHFHVLIQFEGKYQCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKAYIEK FT DGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQFHNL FT NANLDRIFQEPPAPYISPFSPSSFDQVPEELEVWAIDNVVDAAARPLRPRSIVIEGDSR FT KGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDWQS FT NTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNTALKNWAVKNAIFVTLEGPLYS FT GTNQSTAQRSEEAQQEEESRS" FT gene complement(2128..2430) FT /gene="AC4" FT CDS complement(2128..2430) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:G9I1Z4" FT /protein_id="AEW67329.1" FT /translation="MGNLIFTCSSSSRGSTNARITDSSTWYPQPDQHISIRTFRELNQA FT QMSRPTSRRTGTPSSGESFRSMEDQQEEDNRQPTTLTPQHLTQAVSQRLLESLRN" XX SQ Sequence 2725 BP; 689 A; 550 C; 650 G; 836 T; 0 other; accggatggc cgcgcgattt tttttgtggg cccccgattt atgagattgc tccctcaaag 60 ctaaataacg ctcccgcgca ctataagtac ttgcgcacta agtttcaaat tcaaacatgt 120 gggatccatt gttaaacgaa tttcctgata cggtgcacgg gtttcggtgt atgctttctg 180 tcaaatattt gcaagtttta tcgcaagatt attcaccgga taccctaggt tacgagttaa 240 tacgggattt aatctgtatt ctacgttccc gtaattatgt cgaagcgagc tgcagatatc 300 gtcatttcta cgcccgcgtc gaaagtacgc cggcgtctga acttcggcag cccatacacc 360 aaccgtgttg ctgcccccat tgtccgcgtc acaaaacaac aggcatggac aaacaggcct 420 atgaacagga agcccagaat gtatcggatg tacagaagtc cggatgttcc aaagggttgt 480 gaaggcccat gtaaggtaca gtcttttgag tccagacatg atgttgttca tattggtaag 540 gtaatgtgta tttctgatgt tactcgtgga gtcggtttga cccatcgtat tggtaaacgt 600 ttttgtgtca agtcagttta tgttttaggt aagatatgga tggatgaaaa tataaagacc 660 aggaatcaca cgaattcggt catgttcttt ttagtccgcg atcgacgacc tgttgacaaa 720 ccacaagatt ttggtgaggt attcaatatg tttgacaacg agcccagtac agcaactgtg 780 aagaatagtc atagggaccg ttatcaggtg ttgaggaaat ggcatgcaac cgttactggt 840 ggtcaatatg catcgaagga acaggctttg gtcaagaagt ttatcagagt taataattat 900 gttgtttaca accagcagga ggcaggaaaa tacgagaatc acaccgagaa tgcattgatg 960 ctttatatgg cttgtaccca tgctagtaac ccagtttatg ctacgcttaa gattcgtatt 1020 tatttttatg actctgtaac gaattgaaat taataaagtt tgaattttat atctgaatat 1080 tggtctacat acattgtttg agtaattaca ttgtacaata catgttcaac ggctttaata 1140 actaaattaa gtgagattac acctagattg ttgagatatt tgaggacttg ggttttgaat 1200 acccttaaga aaagaccagt cggagggtgt aaggtcgtcc agattcggaa ggttagaaaa 1260 cacttgtgca ctcccagagc tttccgtagg ttgtagttga aatggatcct gatcgtgagt 1320 atgtccatgt tcgtcgtgaa tggacggttg tcgtggctga ggatcttgaa atagagggga 1380 tttggaacct cccagatata gacgccattc gttgcttgag ctgcagtgat gggttcccct 1440 gtgcgtgaat ccatggctgt ggcagttgat tgacagataa taagaacacc cgcattcaag 1500 atctactctc ctcctcctgt tgcgcctctt cgcttctctg tgctgtactt tgattggtac 1560 ctgagtacag gggtccttca agtgtgacga agatcgcatt ctttactgcc cagttcttta 1620 gtgcggtgtt cttttcctcg tctaggaatt ctttataact gctgttggga ccaggattgc 1680 acaagaagat tgtcggtatc ccgcctttaa tttgaactgg cttcccgtat tttgtgttgg 1740 actgccagtc tctttgggcc cccatgaact ctttaaagtg tttgaggaaa tgcgggtcga 1800 cgtcatcaat gacgttgtac caggcgtcgt tactgtagac tttgggactc aagtccagat 1860 gtccacacaa atagttatgt ggtcccaatg acctagccca catcgttttc ccctttcgac 1920 tatctccctc aattactata ctccgaggtc taaggggccg cgcagcggca tcgacaacgt 1980 tatcgatggc ccaaacttca agttcttctg gaacttgatc gaaagaagaa ggagaaaaag 2040 gagaaatata gggagccggt ggctcctgaa agattctgtc tagatttgca tttaaattat 2100 gaaattgtag tacaaaatct ttaggagcta gttccttaat gactctaaga gcctctgact 2160 tactgcctgc gttaagtgct gcggcgtaag cgtcgttggc tgtctgttgt cctcctcttg 2220 ctgatcttcc atcgatctga aactctcccc actcgagggt gtccccgtcc ttctcgatgt 2280 aggccttgac atctgagctt gatttagctc cctgaatgtt cggatggaaa tgtgctgatc 2340 tggttgggga taccaggtcg aagaatctgt tattcgtgca ttggtacttc ccctcgaact 2400 ggatgagcac gtgaaaatga ggttccccat tttcgtgaag ctctctgcag atcttgatgt 2460 attttttgtt tactggggta tgtaggtttt gtaattggga gagggtttct tctttagtta 2520 gagagcattt gggataagtg aggaagtagt ttttggcgtt tgtttttaag gcacgtggca 2580 ttttggcaat cggtgtacac tctaattctc tggcaatcgg tgtaacgggg tgcaatatat 2640 aggtgtaccc caaatggcat ttacgtaatt tgggaaagta attcaaaatc ctcacgctcc 2700 aaaaagcggc catccgtata atatt 2725 //