ID JN555602; SV 2; linear; genomic RNA; STD; VRL; 6643 BP. XX AC JN555602; XX DT 02-JAN-2012 (Rel. 111, Created) DT 23-JUN-2016 (Rel. 129, Last updated, Version 7) XX DE Frangipani mosaic virus strain Fr-Ind-1, complete genome. XX KW . XX OS Frangipani mosaic virus OC Viruses; Riboviria; Virgaviridae; Tobamovirus. XX RN [1] RP 1-6643 RX DOI; 10.1007/s11262-015-1228-3. RX PUBMED; 26239043. RA Kumar A., Solanki V., Verma H.N., Mandal B.; RT "Characterisation and diagnosis of frangipani mosaic virus from India"; RL Virus Genes 51(2):310-314(2015). XX RN [2] RP 1-6643 RA Kumar A., Mandal B.; RT "The complete genome sequence and genome organization of Frangipani mosaic RT virus strain Fr-Ind-1"; RL Unpublished. XX RN [3] RP 1-6643 RA Kumar A., Mandal B.; RT ; RL Submitted (05-AUG-2011) to the INSDC. RL Plant Pathology, Indian Agricultural Research Institute, Pusa Campus, New RL Delhi, Delhi 110012, India XX RN [4] RC Sequence update by submitter RP 1-6643 RA Kumar A., Mandal B.; RT ; RL Submitted (24-DEC-2013) to the INSDC. RL Plant Pathology, Indian Agricultural Research Institute, Pusa Campus, New RL Delhi, Delhi 110012, India XX DR MD5; 083c4a912fa996793a2d571fa078a0ae. XX CC On Dec 24, 2013 this sequence version replaced gi:364783358. XX FH Key Location/Qualifiers FH FT source 1..6643 FT /organism="Frangipani mosaic virus" FT /host="Plumeria rubra f. acutifolia" FT /lab_host="Nicotiana benthamiana" FT /strain="Fr-Ind-1" FT /mol_type="genomic RNA" FT /country="India:IARI, New Delhi" FT /isolation_source="Frangipani leaf showing mosaic and vein FT banding symptoms" FT /collection_date="10-May-2010" FT /db_xref="taxon:99585" FT CDS 78..5030 FT /codon_start=1 FT /transl_except=(pos:3516..3518,aa:OTHER) FT /product="replicase large protein" FT /note="readthrough protein" FT /db_xref="GOA:G9I1R1" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:G9I1R1" FT /protein_id="AEW67306.2" FT /translation="MAHISDIATLSGAPAAAVDKVVSELACKKIYEDTVNTLQSLDKRP FT KIYFSRALTQEHVALVTRAYPEFDVQFTGTTNSVHNLAGGLRSLELEWMMTQIPYGYPT FT YDIGGNFSAHMLKGRSYVHCCNPMLDIRDIARVQGFHENIKRHISKHSVKPTAISSHDV FT PKHRALPEYQLDAFRTYHEHPEYITCNDRFQECKIPVEESNYAVSLHSLYDIDADELGP FT ALLRKNVQTMYAAFHMSEEIAMGYAEGTLNDINAVFSRQGEDIVFTFLEESTLAYKHKF FT SNLMAYTARTFFPASTRYVYFKEFLCSRVCTKFVKFCLVDTHCLNRSVFSVAPEIDTEM FT DDMWERSTLCCTLREKTPIFTDKALMSVWFPKGSKCVLLPIFEGFFEKSDHVTESWEMV FT DKNFVFTVLNHVQTYQAKQLTFQNVLSFCESIRSRVVVNGTSVRSEWDIPLELISKISL FT SLFLIAKFNNLKAEAVIKSFNFEKRNVLSLGYSAFKEFMQEHTEPLTCWLLKKGYMKSV FT EDRLEIRDIDLLMSFEDSIKLSYNGTSKPKLCNVSESLSASDKLFILASDISKRFPSVS FT FDQEKFIHFCNSLKVDLDVVSKVLAGLTTGDFGITLAGISASQCPESTLAATFAHVDDS FT RGDNLCSATSLALDRCKKDKEVYTIPKEHCIKGPNGEKGKRVWVEKPSIGLPLAGISGE FT ASMKFTLLDDDGVETDLSDLNGKMVSEFKNLKKKILLYSGSVREQQMKNAIDYYAAVVT FT ATLNNLQKIVHDYMPGQAKGFKTYGVYDCATKSWLLEPPTYGHAWGVADTTEGDKIVYL FT SADKEHQEKLICPSNWKRVAVNGDSMLFSSMKILQKLSNIEIRDPECKFVLVDGVPGCG FT KSAEIIERCDLSKDLVLCAGRSASEMLRGRLNKIGKKATNSNVRTIDSFLMNPIPLSYD FT KVWVDEGLMVHTGIISFIALFSKAKTCYVYGDTKQIPFLNRVMDFEYPERLKNLVVDEV FT ESRNVTHRCPMDVTLQLNEVYKRHVSTTSSVERSLHVENLIGNAVFQPERYKETWDKIL FT VFTQAEKQTLKKRGYKSVNTVHEVQGETFKDVALVRLDPTQLSLIEKGSPHILVALSRH FT THRLVYYTVKLDNLCTQIESLCSVPSFMLQTFRVDSSTKXQLMDLPVYEFRNLHKETAK FT SNSVSDLQYYYDCCLPGNSTVLNNFDATTIRLTDIALNSQDIRLTLSKLDPVPELVKES FT SRSYLQPVLRTAVEKPRTPGLLENWIAMIKRNFDCPELSGDVDIDAVAEKVVSRFFDVY FT VDKDRLEADSYMGSESLVCEWLRKQTPATLGQLENIKCMGAVNEYKHMIKRQPKAKLDN FT SILSEYPALQTIVYHSKDINAIFGPVFDDMTRRLLESIDSERFLFFTRKTPSDVQDFFS FT NLSSKQELDVYELDVSKYDKSQNEFHCAVEMKIWGRLGFDKYLKYVWEMGHKLTTITDY FT SAGIKTSVWYQRKSGDVTTFIGNTIIIAACLASCMPMEKSFKAAFCGDDSIVYMPKGTP FT CDNVHAGASLMWNFSAKLYRRSQGYFCGKYIVRHPGGCIVYPDPLKLISKLGNKSIKDW FT SHLEEFRVSLFDVFKPLSNNCYYMFLDDAIREVFPQACSCSFVLCALYKYLSDPVSFRS FT LFIEPEKNNGTS" FT CDS 78..3518 FT /codon_start=1 FT /product="replicase" FT /db_xref="GOA:G9I1R2" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:G9I1R2" FT /protein_id="AEW67307.2" FT /translation="MAHISDIATLSGAPAAAVDKVVSELACKKIYEDTVNTLQSLDKRP FT KIYFSRALTQEHVALVTRAYPEFDVQFTGTTNSVHNLAGGLRSLELEWMMTQIPYGYPT FT YDIGGNFSAHMLKGRSYVHCCNPMLDIRDIARVQGFHENIKRHISKHSVKPTAISSHDV FT PKHRALPEYQLDAFRTYHEHPEYITCNDRFQECKIPVEESNYAVSLHSLYDIDADELGP FT ALLRKNVQTMYAAFHMSEEIAMGYAEGTLNDINAVFSRQGEDIVFTFLEESTLAYKHKF FT SNLMAYTARTFFPASTRYVYFKEFLCSRVCTKFVKFCLVDTHCLNRSVFSVAPEIDTEM FT DDMWERSTLCCTLREKTPIFTDKALMSVWFPKGSKCVLLPIFEGFFEKSDHVTESWEMV FT DKNFVFTVLNHVQTYQAKQLTFQNVLSFCESIRSRVVVNGTSVRSEWDIPLELISKISL FT SLFLIAKFNNLKAEAVIKSFNFEKRNVLSLGYSAFKEFMQEHTEPLTCWLLKKGYMKSV FT EDRLEIRDIDLLMSFEDSIKLSYNGTSKPKLCNVSESLSASDKLFILASDISKRFPSVS FT FDQEKFIHFCNSLKVDLDVVSKVLAGLTTGDFGITLAGISASQCPESTLAATFAHVDDS FT RGDNLCSATSLALDRCKKDKEVYTIPKEHCIKGPNGEKGKRVWVEKPSIGLPLAGISGE FT ASMKFTLLDDDGVETDLSDLNGKMVSEFKNLKKKILLYSGSVREQQMKNAIDYYAAVVT FT ATLNNLQKIVHDYMPGQAKGFKTYGVYDCATKSWLLEPPTYGHAWGVADTTEGDKIVYL FT SADKEHQEKLICPSNWKRVAVNGDSMLFSSMKILQKLSNIEIRDPECKFVLVDGVPGCG FT KSAEIIERCDLSKDLVLCAGRSASEMLRGRLNKIGKKATNSNVRTIDSFLMNPIPLSYD FT KVWVDEGLMVHTGIISFIALFSKAKTCYVYGDTKQIPFLNRVMDFEYPERLKNLVVDEV FT ESRNVTHRCPMDVTLQLNEVYKRHVSTTSSVERSLHVENLIGNAVFQPERYKETWDKIL FT VFTQAEKQTLKKRGYKSVNTVHEVQGETFKDVALVRLDPTQLSLIEKGSPHILVALSRH FT THRLVYYTVKLDNLCTQIESLCSVPSFMLQTFRVDSSTK" FT CDS 5017..5787 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:G9I1R3" FT /db_xref="InterPro:IPR001022" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:G9I1R3" FT /protein_id="AEW67308.1" FT /translation="MALVELKEPKQLKVNDFVKMSFADKILPRSLTRLRTVSISETNVV FT KLSGLGSTVNLNILKGVVLNSESKYVTIRGVVISGVWMVPEGCGGGATVTLMDRRMKGF FT KNGLVAEFKTRASSRDFQFKFIPNYSMCVDDVKRAPWELFFKLVGVPIEDGYYPLAIEI FT ATLVEQSRTIINHGLRATILKRCDDISDLELPSVDLDESIELVSNSNIVSKRKTHKKGK FT KRKNTKTESESSEFARVPNFRGDDLSESGDNEDI" FT CDS 5845..6369 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:G9I1R4" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:G9I1R4" FT /protein_id="AEW67309.1" FT /translation="MSYTNISTTNIIYFARSYIPGVDFIDLIISGLGQSFQTQSARDEF FT RSQLIGSYKVVVSKTVRFPENTIYLWANNPTIRPLLHAVFQALDTRNRIIEVESTNAVN FT PTSSETREATRRVDDATVAVRSQLQLLFDALSGGSGLYDRKAFEDASGLVWEEAAAVGT FT ARTSGTGTTTA" XX SQ Sequence 6643 BP; 1999 A; 1128 C; 1506 G; 2010 T; 0 other; gtatcattta ccaacgatta caaacacaat cacaggtaat ttaataacaa tttacgacat 60 acatttacaa taacatcatg gcacacatca gtgatattgc tactttgtct ggggctccgg 120 ctgctgctgt tgacaaggtt gtcagtgaac tagcttgcaa aaagatttat gaagacactg 180 ttaatacttt gcagtcattg gataaacgtc ccaaaattta tttttcgaga gcactcacac 240 aggagcatgt cgcactggtt actagggctt accctgagtt cgatgtacaa tttaccggca 300 caaccaattc tgtccacaat ttggccggtg gattgcgatc attagagctt gaatggatga 360 tgactcagat cccttatggg tatcccactt atgatattgg gggaaatttt tcagcccata 420 tgctaaaggg tcgttcttat gtccattgct gtaaccccat gttggacatt agagatattg 480 ccagagttca aggtttccat gaaaacataa aaaggcatat ttctaaacat tcggttaaac 540 ctactgcaat ttcttcccat gacgttccga agcatcgtgc attaccggag taccagctag 600 acgctttcag aacttatcat gagcatcctg agtatattac atgcaatgat agatttcagg 660 agtgcaaaat tccagtcgaa gaaagtaact atgctgtttc actccattct ctctatgata 720 tcgatgctga tgaacttgga cctgcattac tgaggaaaaa tgtccaaact atgtatgcag 780 cgttccacat gagtgaagag atcgctatgg gttatgctga gggcactttg aatgatatca 840 atgcagtatt ttcgcggcaa ggcgaggaca tcgtgtttac ttttctagaa gaaagcacgc 900 tcgcgtataa acacaaattt tctaatttga tggcttatac agctcgtact ttctttcctg 960 ctagtactag atatgtttat tttaaagaat tcttgtgttc cagagtctgt acaaagtttg 1020 tgaagttttg tcttgtggac acgcactgtc tcaatcgaag cgttttttct gtcgctcccg 1080 aaattgacac cgaaatggac gatatgtggg aacgcagcac attatgctgc acgcttagag 1140 aaaagacacc gattttcaca gataaagctt taatgagtgt atggttccct aagggtagta 1200 agtgtgtttt acttcctatt tttgaaggtt tttttgaaaa atctgatcat gttactgaat 1260 cgtgggaaat ggtggacaag aatttcgttt tcacagtttt gaatcatgtc caaacctatc 1320 aggcgaaaca gttaacattt cagaatgttt tgtccttttg tgagtcaata agatcaaggg 1380 tagtagtcaa tggtactagt gtaagatcgg aatgggatat acctttagag ttaatatcaa 1440 aaatctcctt gtccttattt ttgatcgcta agtttaacaa cttaaaggct gaagcagtaa 1500 ttaaaagttt caatttcgaa aaacgtaatg tgttatcact aggatatagc gcattcaagg 1560 aatttatgca ggagcatacc gaacctctca cttgctggtt gttgaaaaag ggttatatga 1620 agtccgttga agatagactc gagatcagag atattgactt gttaatgtca tttgaagact 1680 cgataaaatt atcatacaat ggcacttcaa aacctaaatt atgcaatgtt agtgagagtt 1740 tgtcggcaag cgacaaatta tttatccttg cgtctgatat atccaagaga tttccatctg 1800 tttctttcga tcaagagaaa ttcattcatt tctgtaacag tcttaaagtt gatttagacg 1860 tagtgtcgaa agtactggct ggtcttacga ctggggattt cggtattact ttagcgggca 1920 tatcagcaag tcaatgtcct gaaagtactc ttgctgcgac ctttgcacat gttgatgatt 1980 ctaggggtga taacttatgt tctgcaacgt ctttggcatt agatagatgt aaaaaggata 2040 aagaagtata tactataccc aaggaacatt gtataaaggg tcctaatgga gaaaaaggaa 2100 aaagagtctg ggttgaaaaa ccctcaattg gtctaccact tgcaggaatt tctggtgaag 2160 caagcatgaa gtttactttg ttggatgatg atggagttga aactgacctc agtgatctga 2220 atggaaaaat ggtcagcgaa tttaaaaatc tcaaaaagaa aattttgttg tacagtggta 2280 gcgtgagaga acagcagatg aaaaatgcaa ttgactacta tgcagctgta gtgacggcaa 2340 ccttgaacaa tttgcaaaaa atagtacatg attacatgcc cggtcaggca aagggtttta 2400 aaacctatgg tgtgtatgat tgtgctacca aatcatggtt gctagaacca cccacttatg 2460 gccatgcttg gggtgttgct gacaccaccg aaggagacaa aattgtttac ctgtctgcgg 2520 ataaggaaca ccaggagaaa ttgatatgtc catcaaactg gaaacgtgtt gcagttaacg 2580 gggatagcat gctgttttct tctatgaaga ttcttcagaa gctatctaac attgagatta 2640 gagatccaga gtgcaaattt gtactcgttg atggcgttcc aggatgtgga aagagtgcag 2700 agataatcga aagatgtgat ctgtccaaag acttggtact ttgtgctgga aggagtgcat 2760 ctgagatgct caggggaaga ttgaataaaa tagggaaaaa ggctactaat tctaatgtaa 2820 gaactatcga ttcatttctc atgaatccta ttcctctatc ttatgacaag gtttgggtag 2880 atgagggatt gatggtgcat actggaatta ttagttttat cgctttgttc tcaaaggcaa 2940 aaacatgtta tgtttatggt gatacaaagc aaattccctt tctgaacagg gtcatggatt 3000 ttgagtatcc cgagcgtctc aagaatctgg tggttgatga ggtggaaagc aggaatgtaa 3060 cgcacagatg tcctatggat gtcacgttac aactgaatga agtttacaag aggcatgtgt 3120 caactacaag ttctgtggaa aggtcgctac atgttgaaaa tttgattgga aatgctgtgt 3180 tccagcctga aaggtataag gaaacatggg ataaaatctt agtattcacc caggctgaga 3240 aacaaacttt aaaaaagaga ggttacaagt ctgtgaacac tgtgcatgag gtacaaggcg 3300 aaacttttaa agatgttgca ttggtgaggt tggaccctac tcaattatct ttgattgaga 3360 aaggttcacc tcatattttg gtggcacttt caaggcacac tcacagattg gtatactata 3420 cagtgaaact tgataacttg tgcacacaga tagaatcact gtgtagcgta ccatctttta 3480 tgttacagac attcagagtc gattcttcga ccaaatagca attaatggac cttcccgtgt 3540 atgagtttcg caacttacac aaggaaactg caaagtccaa ttctgtttct gacttgcagt 3600 actattatga ttgttgtctg ccaggaaata gcactgtact taataatttt gatgcaacta 3660 caattcgact taccgatatc gctcttaatt ctcaggacat acgattaaca ctgtcaaagc 3720 tcgatcctgt tcctgagcta gtcaaagagt catctaggtc ttatttacag cccgtactca 3780 ggactgctgt agaaaaacct aggactccag gcctgctcga gaactggata gcaatgatta 3840 agcgtaattt tgattgtcca gaactaagtg gtgatgttga tatcgatgca gtagctgaga 3900 aagttgtttc caggttcttt gatgtatatg tggataaaga taggttggaa gcggactcat 3960 acatgggaag cgaatcgtta gtttgcgaat ggttgagaaa gcagactccg gctacactgg 4020 ggcaattgga aaatatcaaa tgcatgggcg ctgtgaatga gtataaacat atgattaaga 4080 ggcagcccaa agcaaagctt gataatagta ttttatcgga gtacccagct ttgcaaacaa 4140 ttgtttatca tagcaaggac attaatgcaa tcttcgggcc ggtttttgat gacatgacta 4200 gacgtctcct ggaaagcata gattctgaaa gatttctttt cttcacaagg aaaactccga 4260 gtgatgttca agatttcttt tcgaatctaa gttcaaaaca ggaattggat gtctatgaat 4320 tggatgtctc caagtatgac aaatcccaga atgaattcca ttgtgcagtt gaaatgaaga 4380 tctggggaag gttgggcttt gacaaatatc ttaaatatgt ttgggaaatg gggcacaaat 4440 tgaccactat taccgattat tcggctggta tcaaaacgtc agtttggtat cagagaaaaa 4500 gcggtgatgt gacaacattc atagggaata ctatcattat tgccgcgtgt ctggcgtcat 4560 gtatgcctat ggaaaaatca ttcaaagctg cgttttgtgg tgatgattct atagtataca 4620 tgccaaaggg tactccgtgc gataatgttc atgctggagc gagcttaatg tggaattttt 4680 cagccaagct atacagaagg tcccaaggat atttttgtgg taaatatata gtgagacacc 4740 ccggtggttg catagtatat cctgatcctt taaaattgat ttcaaaactg ggaaataaaa 4800 gtatcaaaga ttggagtcat ttagaagagt ttagagtgtc tctttttgat gtttttaaac 4860 ctttgtccaa taattgttat tatatgtttt tggatgacgc aattcgtgag gttttccctc 4920 aggcttgcag ttgttctttt gttttgtgtg ctttgtataa atatttgagt gatcctgttt 4980 cttttagatc tttgtttatt gagccggaaa agaataatgg cactagttga gctaaaggaa 5040 cctaaacaac ttaaggtcaa tgatttcgtc aaaatgtcct ttgcagacaa gattttgcca 5100 agatcattga caaggttgcg aacggtctct attagtgaaa cgaatgtcgt taaactttct 5160 ggtttagggt ctaccgtaaa tttaaatatt cttaaaggtg ttgtgctaaa ttcagagtcg 5220 aagtatgtca ctatcagggg tgtcgtgatt tctggagtgt ggatggttcc tgaaggttgc 5280 ggtggtggtg ctactgttac actgatggat aggaggatga aaggatttaa gaatggttta 5340 gttgctgaat ttaaaacgag agcctcctct agagacttcc agtttaagtt cataccaaac 5400 tattctatgt gtgtggatga tgttaaaaga gccccatggg aattgttctt taagctcgta 5460 ggcgtgccga tcgaagatgg ttactatcca ttagccatcg agatagccac acttgttgag 5520 cagtcgagga caattatcaa ccatggtctt agagcaacaa tattgaaaag gtgtgatgac 5580 atttctgatc ttgaacttcc ttctgtggat ttagatgagt ctatagaatt agtaagtaat 5640 tcgaatattg tttcaaaaag aaaaactcat aaaaaaggaa aaaagaggaa aaatacaaaa 5700 acagagtcag agtcttcgga atttgctaga gttccgaatt tcaggggtga tgatttgagt 5760 gaaagtggag ataatgaaga tatttagtgt tgatttgtta attgagtcgt agagtcttga 5820 cagacgatac gtattcgata aacaatgtcg tacactaata tatcaacaac gaatattata 5880 tatttcgctc ggtcatatat tcctggtgtc gattttatag atttaataat ttctggtttg 5940 ggtcagtctt ttcaaactca atctgctaga gatgagttta ggtcgcagtt gataggtagc 6000 tacaaggtag tggtatcgaa aaccgtgagg tttcccgaaa atactatata cttgtgggcg 6060 aataatccaa ccatacgtcc tttgttgcat gccgtgttcc aggcgttgga tactaggaac 6120 cgtatcattg aagtggagtc aactaatgcg gtgaatccaa cgagttctga gacaagggag 6180 gcaacaagga gagttgacga tgcgactgtg gccgtaagat cacaattgca gttgttattc 6240 gatgcacttt ctggaggttc tggtctttat gaccggaaag cttttgaaga tgcttcgggg 6300 ttggtatggg aagaggctgc tgcagttgga actgctagga cctctggaac gggtactact 6360 accgcgtaat aaatatataa taaaaacgtc atttgtagac gttaaaatta caaacgtggg 6420 ttcgacgata tgaactagtg tttttctgtc cacttaaatc gaacagaaca aacgtggtgc 6480 gtacgaaaac gcatagtgct taccgatcca cttaaataga atcggggaca acttccgggg 6540 tctgctgtgc agacggaaac ggaggccggc aagtgctggg tccatcatga cacgatggat 6600 aagagaggtg caattcctcc ccttaacccc cggtagcggc cca 6643 //