ID JN555601; SV 1; circular; genomic DNA; STD; VRL; 2754 BP. XX AC JN555601; XX DT 04-NOV-2012 (Rel. 114, Created) DT 06-DEC-2019 (Rel. 143, Last updated, Version 2) XX DE Chilli leaf curl Sri Lanka virus isolate CL-14, complete genome. XX KW . XX OS Chilli leaf curl Sri Lanka virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2754 RA Senanayake D.M., Mandal B., Jayasinghe J.E., Wasala S.K.; RT "Chilli Leaf Curl Sri Lanka Virus"; RL Unpublished. XX RN [2] RP 1-2754 RA Senanayake D.M., Mandal B., Jayasinghe J.E., Wasala S.K.; RT ; RL Submitted (04-AUG-2011) to the INSDC. RL Plant Pathology, Indian Agricultural Research Institute, Pusa Campus, New RL Delhi, Delhi 110012, India XX DR MD5; b271d12e54875105838758224e865623. XX FH Key Location/Qualifiers FH FT source 1..2754 FT /organism="Chilli leaf curl Sri Lanka virus" FT /host="chilli" FT /isolate="CL-14" FT /mol_type="genomic DNA" FT /country="Sri Lanka:Nochchiyagama" FT /collection_date="Nov-2009" FT /db_xref="taxon:2560381" FT gene 197..490 FT /gene="V2" FT CDS 197..490 FT /codon_start=1 FT /gene="V2" FT /product="V2 protein" FT /db_xref="GOA:K4F1H8" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:K4F1H8" FT /protein_id="AEY77836.1" FT /translation="MLAIKYLQLVENTYSPDSLGYDLIRELISVVRAKNYVQASGRYDH FT FRTRLEVSSTADLNQPIQPTCCCPHCPRHKGKGMGQQAHESEAHVLQNVQKP" FT gene 303..1076 FT /gene="V1" FT CDS 303..1073 FT /codon_start=1 FT /gene="V1" FT /product="V1 protein" FT /db_xref="GOA:K4F1W6" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:K4F1W6" FT /protein_id="AEY77833.1" FT /translation="MSKRPADMIISGPASKYRRLLTSTSPYSRRAAVRIVRATKGKEWA FT NRPMNRKPMFYRMYRSPDVPKGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGDVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT SENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1070..1474) FT /gene="C3" FT CDS complement(1070..1474) FT /codon_start=1 FT /gene="C3" FT /product="C3 protein" FT /db_xref="GOA:K4F967" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:K4F967" FT /protein_id="AEY77834.1" FT /translation="MDLRTGERITAAQATNGVSILQVPNPLYFKILSHDSRPFNSNTDL FT ITIRVQFNHNLRKALGIHKCFLTFRIWTTLQPQTGHFLRVFRTQVLKCINNFAVISLNN FT VIRAVDHVLWNVLTQTVYVQSSNIIKFNVY" FT gene complement(1215..1619) FT /gene="C2" FT CDS complement(1215..1619) FT /codon_start=1 FT /gene="C2" FT /product="C2 protein" FT /db_xref="GOA:K4F5F8" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:K4F5F8" FT /protein_id="AEY77835.1" FT /translation="MQSSSPSQAHYTQVPIKVLHRQAKRSIRRKRVDLDCGCSYYIHIN FT CRNHGFTHRGTHHCSSGNEWRQYLAGPKSPIFQDPQPRQQAIQLQHGPDNYQGPVQPQP FT SESVGDTQMFSNLPNLDDLTASDWSFLKGV" FT gene complement(1516..2640) FT /gene="C1" FT CDS complement(1516..2640) FT /codon_start=1 FT /gene="C1" FT /product="Rep protein" FT /db_xref="GOA:K4F1W7" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:K4F1W7" FT /protein_id="AEY77838.1" FT /translation="MEFGEPIVQFKMPKTRSFQVQAKNIFLTYPKCPIPKEQMLELIKG FT INCPSDKLFIRVAQEKHQDGSLHIHALIQFKGKAQFRNPRHFDVTHPNTSSQFHPNFQG FT AKSSSDVKSYIEKDGDYIDWGDFQLDGRSARGGQQTANDAAAEALNSGSADAALAIIRE FT KLPKDFIFQYHNLKSNLDRIFAPPREVYISPFSISSFDQVPDELEEWAAVNVVTAAARP FT IRPIGIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPRVYSNDAWYNVIDDVDPHYLKH FT FKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKHSALKHWALK FT NAIFVTLTGPLYSGTNQGSPQASQEVHQEEEGGP" FT gene complement(2157..2450) FT /gene="C4" FT CDS complement(2160..2450) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:K4F2I2" FT /protein_id="AEY77837.1" FT /translation="MGLCISMPSSSSRVKPSSETPDISMSLTLTPHPNSIQTSRELSPH FT PMSSPTSRRTVITSTGVIFSSMEDLLEEVNRQLMMLQQRPSIQDPLMPLWQ" XX SQ Sequence 2754 BP; 727 A; 580 C; 645 G; 802 T; 0 other; accggatggc cgcgcccctt tctgtcgctt tcatggtccc cccgtgtgtc ttttccccac 60 cacatatgtg cccccgtcaa agcttaatta ttcatgtggg cccctatata aacttggtga 120 ccaagtttta cattcattta caatgtagga tccacttgta aatgattttc ctgaaaccgt 180 acacgggttc aggtgtatgc ttgcaattaa atacttgcaa cttgtagaaa atacgtattc 240 ccctgattct ctgggatacg acttgatacg agaattaata tccgtagttc gtgccaaaaa 300 ttatgtccaa gcgtccggca gatatgatca tttcaggacc cgcctcgaag tatcgtcgac 360 tgctgacctc aaccagccca tacagccgac gtgctgctgt ccgcattgtc cgcgccacaa 420 agggaaagga atgggccaac aggcccatga atcggaagcc catgttctac agaatgtaca 480 gaagccctga tgttcccaag ggatgtgaag gcccatgtaa ggtccagtct ttcgagtcta 540 ggcatgacgt agttcatatt ggtaaggtta tgtgtattag tgatgttact aggggtacgg 600 gtctgaccca tagggtaggt aagcgtttct gcgttaagtc tgtctatgtt ctgggcaaga 660 tatggatgga tgagaacatc aaaaccaaga accacactaa cagtgttatg ttcttccttg 720 ttcgtgatcg tcgtccagtt gataaacctc aagattttgg tgatgtgttt aacatgttcg 780 acaacgagcc gagcactgca acggtcaaga atatgcacag ggatcgttac caggttctca 840 ggaagtggca tgcaaccgtg actggtggtc aatatgcgtc taaggagcag gctctcgtga 900 agaaatttgt tagggttaat aattatgttg tgtataacca gcaagaggct ggcaagtatg 960 agaatcacag tgagaatgcg ttgatgttgt atatggcatg tacgcatgcc tcaaaccccg 1020 tgtatgctac tctgaaaata cgaatctatt tctacgattc ggttacaaat taataaacat 1080 tgaattttat tatgtttgaa ctctgtacat agactgtttg cgttaataca ttccacaata 1140 catgatcgac tgccctaatt acattgttga ggctaattac agcaaaatta ttgatacatt 1200 ttaacacttg ggtcctaaac acccttaaga aatgaccagt ctgaggctgt aaggtcgtcc 1260 agattcggaa ggttagaaaa catttgtgta tccccaacgc tttccgaagg ttgtggttga 1320 actggaccct gatagttatc aggtccgtgt tggagttgaa tggcctgctg tcgtggctga 1380 ggatcttgaa atatagggga tttgggacct gcaagatact gacgccattc gttgcctgag 1440 ctgcagtgat gcgttcccct gtgcgtaaat ccatggttcc tgcagttgat atggatgtag 1500 taggaacaac cacagtcaag gtccaccctc ttcctcctga tggacctctt ggcttgcctg 1560 tggagaacct tgattggtac ctgagtatag tgggcctgtg agggtgacga agattgcatt 1620 cttgagtgcc caatgtttta gtgcggaatg cttttcttcg tccaggaact ctttatagct 1680 ggagttgggc cctggattgc agaggaagat agtgggaatg ccacctttaa tttgaactgg 1740 ctttccgtat ttggtgttgg actgccagtc cctttgggcc cccatgaact ctttaaagtg 1800 ttttaaataa tgcggatcca catcatcaat gacgttatac catgcgtcat ttgaatacac 1860 tcttgggctt aagtccaagt ggccacacaa ataattgtga gggccgaggg acctagccca 1920 cattgttttg ccggtccgac tatcaccctc aataacaatt cctatgggcc taataggccg 1980 cgcagcggca gtgacaacat taactgcagc ccattcttca agttcatcag gaacttgatc 2040 aaaagaagaa atagaaaaag gagaaatata aacctctctt ggaggtgcaa aaatcctatc 2100 taaattagac tttaaattat gatattgaaa aataaaatct ttagggagtt tctcccttat 2160 tattgccaaa gcggcatcag cggatcctga attgagggcc tctgctgcag catcattagc 2220 tgtctgttga cctcctctag cagatcttcc atcgagctga aaatcacccc agtcgatgta 2280 atcaccgtcc ttctcgatgt aggacttgac atcggatgag gacttagctc cctggaagtt 2340 tggatggaat tgggatgagg tgttagggtg agtgacatcg aaatgtctgg ggtttctgaa 2400 ctgggcttta cccttgaact ggatgagggc atggatatgc agagacccat cttggtgttt 2460 ttcctgagca acccgtataa atagtttatc agatggacag ttaatgccct taataagttc 2520 taacatttgt tctttgggta ttgggcattt ggggtatgtt aaaaaaatat ttttagcctg 2580 aacttgaaac gaccgtgttt taggcatttt gaattggaca attggctctc caaactccat 2640 gtgggaattg gaggctttgg aggctcattt ataccaagcc tccaaatggc agtatggtaa 2700 ttttttagaa atttcaatca acttcccgcc aaaagcggcc atccgtataa tatt 2754 //