ID JN555600; SV 1; circular; genomic DNA; STD; VRL; 2754 BP. XX AC JN555600; XX DT 04-NOV-2012 (Rel. 114, Created) DT 05-APR-2013 (Rel. 116, Last updated, Version 2) XX DE Chilli leaf curl virus isolate CL-15 from Sri Lanka, complete genome. XX KW . XX OS Chilli leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2754 RX PUBMED; 23090833. RA Senanayake D.M., Jayasinghe J.E., Shilpi S., Wasala S.K., Mandal B.; RT "A new begomovirus-betasatellite complex is associated with chilli leaf RT curl disease in Sri Lanka"; RL Virus Genes 46(1):128-139(2013). XX RN [2] RP 1-2754 RA Senanayake D.M., Mandal B., Jayasinghe J.E., Wasala S.K.; RT ; RL Submitted (04-AUG-2011) to the INSDC. RL Plant Pathology, Indian Agricultural Research Institute, Pusa Campus, New RL Delhi, Delhi 110012, India XX DR MD5; 68c75c3719a98d3d12f982b1ba223a96. XX FH Key Location/Qualifiers FH FT source 1..2754 FT /organism="Chilli leaf curl virus" FT /host="chilli" FT /isolate="CL-15" FT /mol_type="genomic DNA" FT /country="Sri Lanka:Nochchiyagama" FT /collection_date="Nov-2009" FT /db_xref="taxon:172278" FT gene 197..490 FT /gene="V2" FT CDS 197..490 FT /codon_start=1 FT /gene="V2" FT /product="pre-coat protein" FT /db_xref="GOA:K4F1W4" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:K4F1W4" FT /protein_id="AEY77828.1" FT /translation="MLAIKYLHLVENTYSPDSLGYDLIRELISVVRAKNYVQASSRYDH FT FRTRLEVSSLVDLNQPIQQACCCPHCPRHKGKGMGQQAHESEAHVLQNVQKP" FT gene 303..1076 FT /gene="V1" FT CDS 303..1073 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:K4F2H8" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:K4F2H8" FT /protein_id="AEY77827.1" FT /translation="MSKRPADMIISGPVSKYRRLLTSTSPYSKRAAVRIVRATKGKEWA FT NRPMNRKPMFYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGDVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT SENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1070..1474) FT /gene="C3" FT CDS complement(1070..1474) FT /codon_start=1 FT /gene="C3" FT /product="C3 protein" FT /db_xref="GOA:K4F965" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:K4F965" FT /protein_id="AEY77829.1" FT /translation="MDLRTGERITAAQATNGVSIWQVPNPLYFTILSHHKRPFNSNNDL FT LTVRVQFNHNLRKALGIHKCFLTFRIWTTLQPRTGHFLRVFRTQVMQCLNNFAVISLNN FT VIRAVDHVLWNVLRQTVYVQSSNIIKFNIY" FT gene complement(1215..1619) FT /gene="C2" FT CDS complement(1215..1619) FT /codon_start=1 FT /gene="C2" FT /product="C2 protein" FT /db_xref="GOA:K4F5F6" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:K4F5F6" FT /protein_id="AEY77830.1" FT /translation="MQSSSPSQAHSTPVPIKVLHRQYKRSIRRKRIDLDCGCSYYLNIN FT CRNYGFTHRGTHHCSSGNEWRQYLAGPKSPIFHNPQPPQTAVQLQQRPANCKGPVQPQP FT SESVGDTQMFSNLPNLDDLTASDWSFLKGI" FT gene complement(1516..2607) FT /gene="C1" FT CDS complement(1516..2607) FT /codon_start=1 FT /gene="C1" FT /product="C1 protein" FT /db_xref="GOA:K4F1H7" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:K4F1H7" FT /protein_id="AEY77831.1" FT /translation="MARTTSFCVNAKNIFLTYPKCPIPKEQMLQLILAISCPSDKLFIR FT ISQEKHQDGSLHIHALIQFKGKAKFRNPRHFDVTHPNTSSQFHPNFQGAKSSSDVKSYI FT EKDGDYIDWGDFQLDGRSARGGQQTANDAAAEALNSGSADAALAIIREKLPHDFIFKYH FT NLKSNLDRIFAPPREVYVSPFSLSSFDQVPDELEEWAAVNVVSAAARPLRPVSVVVGGD FT SRTGKTIWARSLGPHNYLCGHLDLSPKIYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLDEEKHSALKHWALKNAIFVTLTGPL FT YSGTHQGSPQAIQEEHQEEENRP" FT gene complement(2157..2450) FT /gene="C4" FT CDS complement(2160..2450) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:K4F2I0" FT /protein_id="AEY77832.1" FT /translation="MGLCISTPSSSSRVKPSSETPDISMSLTLTPHPNSIQTSRELSPH FT QMSSPTSRRTVITSTGVTFSSMEDLLEEVNRQLMMLQQRPSIQAPLMPLWQ" XX SQ Sequence 2754 BP; 739 A; 579 C; 652 G; 784 T; 0 other; accggatggc cgcgtgccct cctgtcgctt tcatgggccc cacgtgtgtc ttatccccac 60 cacatatatg tcatagttga agcttaatta tttctgtggg cccctatata tacttggtcc 120 ccaaggttta caatcattta caatgtagga cccactagta aatgattttc cagaaacagt 180 gcacgggttt aggtgtatgc ttgctataaa atacctgcac ttagtagaaa atacgtattc 240 cccggattca ttgggatacg acctgatacg tgaattaatt tccgtagtta gggcgaaaaa 300 ttatgtccaa gcgtccagca gatatgatca tttcaggacc cgtctcgaag tatcgtcgct 360 tgttgacctc aaccagccca tacagcaagc gtgctgctgt ccgcattgtc cgcgccacaa 420 agggaaagga atgggccaac aggcccatga atcggaagcc catgttctac agaatgtaca 480 gaagccctga tgttccgagg ggctgtgaag gcccatgtaa ggtccagtct tttgagtcta 540 gacacgatgt agttcatata gggaaggtca tgtgtatcag tgatgttact aggggtactg 600 gtctcaccca tagggtaggt aagcgtttct gcgttaagtc cgtttatgtt ctggggaaga 660 tatggatgga cgaaaacatc aaaaccaaaa accacactaa cagtgtcatg ttcttcctcg 720 ttcgtgatcg tcgtccggta gataagccgc aagattttgg cgatgtgttt aacatgttcg 780 acaacgagcc gagcacggcg actgtgaaga atatgcatag ggatcgttat caggttctcc 840 ggaagtggca tgcaacggtc actggtggac agtatgcgtc aaaggaacag gcgttagtca 900 agaagtttgt tagggttaat aattatgttg tgtataatca gcaagaggct ggcaagtatg 960 agaatcatag tgagaatgct ctgatgttgt atatggcatg tacgcatgcc tctaaccccg 1020 tgtatgcgac attgaaaata cgcatctatt tctacgattc agtgacaaat taataaatat 1080 tgaattttat tatgtttgaa ctctgtacat acactgtttg cctcaacaca ttccataata 1140 catgatcaac agctctaatt acattattta ggctaattac agcaaaatta ttaagacatt 1200 gcattacttg ggtcctaaat acccttaaga aatgaccagt ccgaggctgt aaggtcgtcc 1260 agattcggaa ggttagaaaa catttgtgta tccccaacgc tttccgaagg ttgtggttga 1320 actggaccct tacagttagc aggtcgttgt tggagttgaa cggccgtttg tggtggctga 1380 ggattgtgaa atatagggga tttgggacct gccaaatact gacgccattc gttgcctgag 1440 ctgcagtgat gcgttcccct gtgcgtaaat ccataattcc tgcagtttat attcaggtag 1500 tatgaacaac cacagtcaag gtctattctc ttcctcctga tgctcctctt gtattgcctg 1560 tggagaacct tgatgggtac cggagtagag tgggcctgtg agggtgacga agattgcatt 1620 cttgagtgcc caatgcttta gtgcggaatg cttttcttcg tccaggtact ctttatagct 1680 ggagttgggc cctggattgc agaggaagat agtgggaatg ccacctttaa tttgaactgg 1740 ctttccgtat ttggtgttgc tttgccagtc cctttgggcc cccatgaact ctttaaagtg 1800 ctttaaataa tgcgggtcaa cgtcatcaat gacgttatac catgcgtcat tggaataaat 1860 ctttgggctc aagtccaagt gtccacataa gtagttatga ggacccaagg acctggccca 1920 tattgtcttc cccgtacgac tatcaccccc aacaactaca cttacgggcc ttagtggccg 1980 cgcagcggca ctcacaacat taactgcagc ccattcttca agttcatcag gaacttgatc 2040 aaaagaagaa agagaaaaag gtgaaacata aacctctcgt ggaggtgcaa aaatcctatc 2100 taagttggac tttaaattat gatatttaaa aataaaatca tgagggagtt tctcccttat 2160 tattgccaga gcggcatcag cggagcctga attgagggcc tctgctgcag catcattagc 2220 tgtctgttga cctcctctag cagatcttcc atcgagctga aagtcacccc agtcgatgta 2280 atcaccgtcc ttctcgatgt aggacttgac atctgatgag gacttagctc cctggaagtt 2340 tggatggaat tgggatgagg tgttagggtg agtgacatcg aaatgtctgg ggtttctgaa 2400 cttggcttta cccttgaact ggatgagggc gtggatatgc agagacccat cttgatgctt 2460 ttcctgggat atccttataa ataatttgtc tgaagggcaa cttatagcca gaattaattg 2520 aagcatttgt tctttgggaa ttggacactt gggataagta agaaatatat ttttagcatt 2580 gacacaaaat gacgtcgttc ttgccatttt gaatcggtca attgacactc aaaactccat 2640 gtgggaatgg gggacaatgg ggacgaatat atagtatgtc cccaaatggc ataagggtaa 2700 ttaccgcgaa ctttccacca atttcccgcc aaaagcggcc atccgtataa tatt 2754 //