ID JN427015; SV 1; linear; genomic RNA; STD; VRL; 7488 BP. XX AC JN427015; XX DT 15-NOV-2011 (Rel. 110, Created) DT 05-APR-2012 (Rel. 112, Last updated, Version 3) XX DE Actinidia virus B isolate TP7-93B, complete genome. XX KW . XX OS Actinidia virus B OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Trivirinae; Vitivirus. XX RN [1] RP 1-7488 RX DOI; 10.1007/s00705-011-1219-1. RX PUBMED; 22274622. RA Blouin A.G., Chavan R.R., Pearson M.N., Macdiarmid R.M., Cohen D.; RT "Detection and characterisation of two novel vitiviruses infecting RT Actinidia"; RL Arch. Virol. 157(4):713-722(2012). XX RN [2] RP 1-7488 RA Blouin A.G., Cohen D.; RT ; RL Submitted (02-AUG-2011) to the INSDC. RL Bioprotection, The New Zealand Institute for Plant & Food Research Limited, RL 120 Mt Albert Road, Sandringham, Auckland 1025, New Zealand XX DR MD5; 838355f42667d337bdb7a5d0bb9ea523. XX FH Key Location/Qualifiers FH FT source 1..7488 FT /organism="Actinidia virus B" FT /host="Actinidia chinensis" FT /lab_host="Nicotiana occidentalis" FT /isolate="TP7-93B" FT /mol_type="genomic RNA" FT /country="New Zealand" FT /collection_date="2007" FT /db_xref="taxon:1112770" FT 5'UTR 1..70 FT gene 71..5194 FT /gene="ORF1" FT CDS 71..5194 FT /codon_start=1 FT /gene="ORF1" FT /product="putative replicase" FT /db_xref="GOA:G8H9D4" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR005123" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR027450" FT /db_xref="InterPro:IPR037151" FT /db_xref="UniProtKB/TrEMBL:G8H9D4" FT /protein_id="AET36890.1" FT /translation="MSISVSSQRMAAASLMQNGSTVEIESIKTLKTERLKKCETRSDGL FT FDYYVSDFLRDYLAKKGVHTSVHSFQAHAHPFSKMIENHLLYNIMSQYIEKTTLFMSFK FT GSKIKKLLLNHKSGADLKNLKCYNRLVHIKDHLRYTDPHKELDMAHLPELARLSETCET FT AVIHDEVQYWSLQDFQLVLGQMNKVKRLMYSIIYPAEIDQGYEHSLFPEAYHFERRGGY FT FIWLPDGQSDGAYKQPINPWLLSTSKTIDSRGRTWTIGKVTSFASHHLFVASLGSTITE FT DEYTYDDYTVIPRGALSSGRRDYSGMYLRSRYVQAVLLYLMALKKPDSSSAVAKMRQLT FT NGDENPAESLFMAQIARQLQDAKLYDSMGTFNLKEAVWNGFCGALGDSITYLIDKEQYK FT VSSMEKFILRCSSARITITRTFRDYQPRRTKLGPELGTSWTGEEDEELQEIYHVVVKEG FT DRERTPYSLKGDEILDNKERRSDLMIQCARMDLLENTKELPSINEPMVFSPIDGFRSMR FT RFMIREGPIRGFSGLAIGWENDPNIRLKEGRITHEQYENIISGTKQATKKQMGQITKCP FT CGAELKRTKVEGGYIRSLIPGWTDQLQGRKAAFYSRHSEEYSYPGGSHKTRGWPAEIER FT MRNELGLGEDFDHCLCQIYEKGAGIPYHADDETCYKEPSVVTVNLFGEADFKTKCTNEL FT SFRLTDGDVLTMGKGFQSNHKHSVQNTGPGRVSLTFRNSIISNQADEDDLSEYEETEAG FT FDETLVVLEKNVKNLCCLDRIAEHMGVKREVCASIIHSKMPRAIEEFKEGGMSISTFIH FT VVKQLDLACYIQNERGNIQVPGKFRELKVSATGEHMSAYLGPTATSTLATALDFNPDVS FT RLSIEVTQSRAIHLLESFREGFTGVNLNKYQKRPLGTDIDNTLIDVYGLFGFAGSGKSY FT YPQTLLRCCNMKDTLVIVPRKALKADWSEKVKDGAIVRTFESAFNGRKGYENIIIDEVG FT LLPPGYIDLVHANFQYDTMLLLGDPLQSEYYNKGDSLFLEPISESVFDRLMGKKNYLYK FT THRLPSNQKLFDVPSKGERSENYLKGAEGDANYDLIITASRAAKEKRGQKGSTIGESQG FT LSVRRVKLVIDRDWGLLNDKAVMVALTRARNTLSVEVDKSMKEHLKVHAKSSILKMFLR FT GQMIKRELIMEMMGTDNGDVELIEKETRFADSDDMEDKLSGDPYLKGLLRLYDDVEMEE FT EEVPDVSLPEPQKTHLPISTKENELAPSLLRAREHREARTPAGTTEQIDEMGYKMEPEN FT PMTHKALYLHHRNSDVATFFLSVKKRLRFMDREKNHRRFNKVKGFGKQLFKVLKETYNL FT RQPDKLPDLDRIEAEFARKRLNKSKNLIEKHSYRSDPDWPSHYLKIFLKQQVCTKMEKR FT GVDAKAGQTIACFCHAVLCKFGPLLRRTEKALRAQLGDNVLIYSQLNYTDLDKWCKNFV FT PSMLGTDSDYEAFDRSQDERILDFEMEVLKFFLWPEEVINEYKELKLMMGSSMGSLAVM FT RFSGEFGTFFFNTICNMAFTCLRYKINKDTPICYAGDDMYAPGHLIISKEHEGTLDQLS FT LKAKVRVSTEPLFCGWRMSPYGIVKDPNLLLDRWKIAKRGGNLDQCMVNYSLEACYGYR FT LGEYLFDINIDIDAQQELVREIIKIKHKLPKGIRKLFSSDPTECGSDGEELEFRVRNEG FT GIESPTETED" FT gene 5124..5819 FT /gene="ORF2" FT CDS 5124..5819 FT /codon_start=1 FT /gene="ORF2" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:G8H9D5" FT /protein_id="AET36891.1" FT /translation="MERSLSSELETKGVSKAQQKQKIELEVLSFLRGDEAVRVPRTPEN FT EESILHLVRLARSRGFINLKHFDKIRASTEPSRLKYAAKHIELVALRLGHNISDLIAEY FT SRPTPLSYIIGPPPGPIKEILTVPEFFKYLTEHLSEPPEEEYEIERKVYDRVDISFPGN FT LLCVYTRDINNQTTEQLLERKQGIEKVLNEFNLSRLLVYDLFINSAACDRKEHQNIRRT FT KGGGWEIRR" FT gene 5698..6570 FT /gene="ORF3" FT CDS 5698..6570 FT /codon_start=1 FT /gene="ORF3" FT /product="movement protein" FT /note="MP" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:G8H9D6" FT /protein_id="AET36892.1" FT /translation="MSSISRGSSSMTSSSTVPRAIAKSTKIFDVPKGEDGRSVARALNR FT NRVYKMDAFEKIFHQSTLKSCVHDELIVENGVVDQNIDLVDEKTIDGLNEEKQPYLHLG FT CVAIAVIPHGRAMKGTVQIKVEDQRFKEGHGTVCSFKCDLKDALSAYASFPGYFVSTTD FT VKNGYALNLKVKAEGMCMVEGVHPLSIQMHCIMKMCDANFEHRYALAKLKPGAYQELLN FT SQQVPGFEIPYKRQMNNETGGIKDTLVMPNVYDAIRKLHPNHVGGYIKDGQSEEGDRGV FT GADRGGPGT" FT gene 6488..7084 FT /gene="ORF4" FT CDS 6488..7084 FT /codon_start=1 FT /gene="ORF4" FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:G8H9D7" FT /db_xref="InterPro:IPR008879" FT /db_xref="UniProtKB/TrEMBL:G8H9D7" FT /protein_id="AET36893.1" FT /translation="MSGATSRTGNLRKEIEELVLTGVVLAPDAKTAGVDKGMYLRTLFG FT YIALNGTSKKTTHYDDVDIIGNNITETSIDSRGKINVATAVRQMLSFSRITPTGAAKGA FT TLRQMCEPFAEEARECLAILASKGIYSQLATKLSKLGQKEPQVMFDFNGGLDLGRMSAT FT EAATTQSLNSRLFRTEGAKAVFAAQSSVGEQAVEI" FT gene 7085..7405 FT /gene="ORF5" FT CDS 7085..7405 FT /codon_start=1 FT /gene="ORF5" FT /product="RNA-binding protein" FT /db_xref="UniProtKB/TrEMBL:G8H9D8" FT /protein_id="AET36894.1" FT /translation="MDDSTFLKGRSSFARRRRANKLGICKCGAICVKHEPGCRKEAISL FT HKIQRLEWVDRGRVTDSETLYPLLRYWISRVYPLCEHTLQIASNCYCVDCLCDRIDLLI FT DE" FT 3'UTR 7406..7488 XX SQ Sequence 7488 BP; 2449 A; 1584 C; 1897 G; 1558 T; 0 other; aataagttct aaacttactt tcaaatctcc gtaacgtacc tgcaaggata accccatttc 60 caaagcatct atgtcaatat ccgtgagctc ccaacgcatg gcagcggcct cgttgatgca 120 aaatggatct acggttgaaa ttgaaagcat aaaaactcta aaaacggaaa ggcttaaaaa 180 atgtgagacg cgcagcgacg ggctattcga ctattacgtg agtgacttcc ttcgagacta 240 cttagccaag aagggggtac acacaagtgt acacagcttc caagctcacg ctcacccttt 300 ttcgaagatg atcgagaacc atctactata taatataatg agccagtaca tagagaaaac 360 cacacttttc atgagtttca aaggctcaaa aataaagaaa ctcttgctga accacaagag 420 tggggctgat ctcaagaacc tcaaatgtta caatagattg gtccacatca aagaccacct 480 gagatataca gacccccaca aggaactaga catggcacat ctacctgagc tggcaagatt 540 aagcgagacc tgtgagacag cagtgataca tgacgaagta cagtactggt ctctacagga 600 tttccagcta gtactggggc aaatgaacaa agtgaaacga ctcatgtatt cgatcattta 660 cccagcagag atagaccaag gctacgagca ctcgttattc ccagaagctt accactttga 720 gagacgaggg ggatacttca tttggttacc agacggccaa tctgatgggg catacaaaca 780 accgatcaac ccgtggctac tgagcacctc aaaaacgatc gattcaagag gacgcacatg 840 gaccattgga aaggtaacaa gctttgcctc ccaccaccta ttcgtagcta gccttggaag 900 caccataacg gaggacgaat acacgtatga tgattacacg gtcataccaa gaggagcgtt 960 gagcagcggc agaagagatt actcgggaat gtacctgaga agcaggtacg tgcaggccgt 1020 gttactctat ctgatggccc taaagaaacc ggattcatcc tccgcagtag caaagatgag 1080 acaactcacc aatggcgacg agaatcccgc tgaatcctta ttcatggcgc agatagcaag 1140 acaattacag gacgcaaaac tgtacgacag tatggggacc tttaatctca aagaagcggt 1200 ctggaacggt ttttgcggtg ccttagggga cagcataacc tacctgatcg acaaggagca 1260 atacaaggtc tcaagcatgg agaaatttat cttacggtgc tcgagtgctc gtatcacaat 1320 caccagaacc ttcagagatt accaacccag gagaacgaag ctgggaccag agcttggaac 1380 tagctggacc ggagaggagg atgaggaatt gcaagagatc taccacgtgg tggtaaaaga 1440 gggagatcga gagaggaccc catactcgct aaagggggac gagatcctcg ataacaagga 1500 gaggagatca gatctaatga tacaatgcgc tagaatggac ctgctcgaga atactaaaga 1560 gctccccagt ataaatgaac caatggtatt cagcccaata gatgggttcc gatcaatgcg 1620 gagattcatg attagagagg gcccaatcag gggtttcagc gggctcgcga tagggtggga 1680 aaatgacccg aatatcagac taaaagaagg acgaattacc cacgagcaat acgaaaacat 1740 aataagtggg actaagcaag ccactaaaaa acaaatgggt caaatcacca aatgtccctg 1800 cggagctgaa cttaaaagga caaaggtaga agggggttat atccgatccc taatacctgg 1860 atggactgac caattacaag gaaggaaggc tgcattctac agcaggcata gcgaggaata 1920 ttcctatccc ggaggctccc acaaaacaag gggatggcca gcagaaattg agagaatgag 1980 aaacgaactc ggattagggg aggattttga ccattgccta tgccaaatat acgaaaaagg 2040 ggcggggata ccctatcacg ctgacgatga aacgtgttac aaggagccta gtgtggtaac 2100 ggtgaaccta tttggtgaag cggatttcaa gacaaagtgc acgaacgagc tatccttcag 2160 attgactgat ggtgacgtgc tgacaatggg aaaaggattt cagagcaacc acaagcactc 2220 cgtacagaac actggccccg gaagagtaag cctcactttc cgcaacagca tcatcagcaa 2280 ccaagcagac gaggacgatc tatctgaata tgaggaaaca gaggcaggct ttgatgaaac 2340 actggtggtg cttgagaaaa atgtgaaaaa tctatgttgt ttggatcgca tagcggagca 2400 catgggggtc aagagagagg tatgcgcaag tataatccat tcgaagatgc ccagggcaat 2460 agaggagttt aaagagggtg gcatgagtat aagcacattt atacatgtgg taaaacagct 2520 cgatctggcc tgttatatcc aaaacgaaag gggaaatatc caagtgccag ggaagttcag 2580 agagcttaaa gtaagcgcaa ctggagagca catgagtgct tacctaggac ctacagctac 2640 tagtacgctt gcaacagcac tggatttcaa cccagacgtg agtagattga gcatcgaggt 2700 gacccagagt agagccatcc accttcttga gtcattccga gagggcttca caggcgtgaa 2760 cctcaacaag taccaaaaac gccccctagg gaccgatatc gacaatactt taatagatgt 2820 gtacggtctc tttgggttcg cagggagcgg gaagagctac tacccacaga ccctcctcag 2880 gtgttgtaat atgaaggata cgcttgtcat cgtacctcga aaagcactaa aagctgactg 2940 gagcgagaaa gtaaaagatg gggccattgt gaggaccttc gagagtgctt tcaacgggag 3000 gaaagggtac gagaatatca taatagatga agtaggtctc ctaccacccg ggtacataga 3060 tctagtgcac gccaacttcc aatatgacac aatgctgttg ttaggggatc cactgcaaag 3120 cgagtactat aacaaaggag atagtttatt cttagaacca atcagtgaga gtgtgttcga 3180 tcgactgatg gggaagaaga attatctcta caagacgcac agattaccat caaaccagaa 3240 actattcgat gtacccagta aaggggagag atcagaaaac tacctcaaag gagcggaagg 3300 tgatgcaaat tatgacctga ttatcaccgc atctagagcg gcaaaagaaa agagaggcca 3360 aaaaggaagc accattggag aaagccaagg ccttagtgtc agaagggtaa aactggtcat 3420 agatagggac tggggccttt tgaacgacaa agctgtcatg gtggccctaa caagagcacg 3480 caacaccttg tccgttgagg tcgacaagag catgaaagag cacctaaagg tacacgccaa 3540 atcgtcaatc ctcaagatgt tcctaagagg tcaaatgatt aaaagggaac taatcatgga 3600 gatgatgggc accgacaatg gtgatgtgga gctgatcgaa aaagaaacaa ggttcgcaga 3660 tagcgatgac atggaggata agctaagtgg tgacccctac ctgaaaggtt tgttacggct 3720 ctacgatgac gtagagatgg aagaggagga ggtaccagat gtgagcctac cggaaccgca 3780 gaagacacac ctacccataa gcacaaaaga gaatgagctt gcaccaagct tgcttagggc 3840 cagagagcac agagaggcta ggaccccagc aggtaccaca gagcagatcg atgagatggg 3900 ttacaaaatg gaaccggaga acccaatgac ccacaaggct ctatacttac accatcgtaa 3960 ctctgacgtt gcgacgttct tcctatccgt taagaagagg ctacgcttca tggatcgaga 4020 gaaaaatcac agaagattca acaaggtgaa gggcttcggc aaacagcttt ttaaggtcct 4080 aaaggagaca tacaacttga gacaaccaga taagctcccg gaccttgaca ggatagaggc 4140 cgaattcgca agaaaaaggt tgaataaatc taagaatttg atagaaaaac attcatatag 4200 atctgaccct gattggccaa gccactacct caaaatcttc ctgaagcaac aagtatgcac 4260 gaaaatggag aagagagggg ttgacgcgaa agccggtcag accatcgcat gcttctgcca 4320 tgctgtgcta tgcaaattcg gaccactcct gaggcgcaca gagaaggctt taagggccca 4380 actgggtgat aacgtgctca tatactcaca attaaactac acagatctag ataaatggtg 4440 caaaaacttt gtaccaagta tgcttgggac agattctgat tatgaggcgt ttgacaggtc 4500 acaggacgaa aggatcctgg atttcgaaat ggaagtgtta aagttcttct tgtggccaga 4560 ggaggtgatt aatgaataca aagagctcaa attgatgatg ggtagctcca tgggatcact 4620 agctgtgatg agattctcgg gcgaattcgg aaccttcttc tttaacacca tctgtaacat 4680 ggccttcacg tgtctgcgtt acaagatcaa taaggacacc ccaatatgct atgctgggga 4740 tgacatgtat gcaccaggtc acctgatcat tagcaaagag catgagggaa ccctagacca 4800 gctatcacta aaagccaaag tgagggtgag tacagaaccc ctcttctgcg gttggagaat 4860 gagcccctat ggtatagtca aggacccgaa cctattgctg gacaggtgga agatagcaaa 4920 aagaggtggg aacttagatc agtgcatggt caactattca ctagaagcat gctatggata 4980 tagattaggt gaatatctgt ttgatattaa tattgacata gacgcacaac aagagttagt 5040 aagagagata ataaagataa aacacaagct cccaaaaggt atacgaaaat tgttttcctc 5100 agaccctaca gaatgcgggt cagatggaga ggagcttgag ttcagagtta gaaacgaagg 5160 gggtatcgaa agcccaacag aaacagaaga ttgagctcga agtactctca ttccttaggg 5220 gagacgaggc agtacgtgta cccaggacac cagagaacga ggagagcata ctccacctag 5280 tgaggttagc tagatctaga ggctttataa atttgaaaca ttttgataag ataagggcgt 5340 caactgaacc atcaaggctc aaatacgcag ctaagcacat cgagttagtt gccctaagac 5400 taggtcacaa catctcagac ctcatagctg aatactccag acccacaccg ctaagctaca 5460 ttatagggcc acccccggga ccaattaagg agatactgac tgtgccggag ttcttcaagt 5520 acctcacaga acatctatct gaaccgccgg aagaagaata cgagatcgaa aggaaagtgt 5580 acgatagggt ggatatcagt tttcctggta acctgttatg tgtgtataca cgtgatatca 5640 ataatcaaac aacagaacag ttactagagc gaaagcaagg gatagaaaag gtactcaatg 5700 agttcaatct ctcgaggctc ctcgtctatg acctcttcat caacagtgcc gcgtgcgatc 5760 gcaaagagca ccaaaatatt cgacgtacca aagggggagg atgggagatc cgtcgctagg 5820 gcactcaaca ggaaccgagt gtacaagatg gacgcattcg agaagatatt ccaccagtcc 5880 acgctaaaga gttgcgtgca tgatgagctg atagtagaaa acggtgtagt tgaccaaaac 5940 atcgacctag tggacgaaaa gaccattgat gggctaaatg aggaaaagca accctacctt 6000 catctcggct gtgtagcaat cgcagtgata cctcatggaa gagcgatgaa aggaactgtg 6060 cagattaaag tggaggatca acgcttcaaa gagggtcacg gaaccgtctg ctccttcaag 6120 tgcgacctca aggatgcgct aagtgcttat gctagcttcc ctggttactt tgtgagcaca 6180 acagatgtga agaacgggta cgcgctcaac ctaaaggtca aagcggaagg aatgtgcatg 6240 gtggaagggg tgcacccgct aagtatacag atgcattgca ttatgaagat gtgtgatgct 6300 aactttgaac acagatacgc cctcgcaaaa ctaaaaccag gagcctacca ggagctgctc 6360 aactcacaac aggtaccagg tttcgagatc ccgtacaaga ggcagatgaa caacgagacc 6420 ggtgggatta aggatacgtt ggttatgcca aacgtttatg atgcaataag aaaactacat 6480 ccaaatcatg tcgggggcta catcaaggac gggcaatctg aggaaggaga tcgaggagtt 6540 ggtgctgacc ggggtggtcc tggcacctga tgcgaaaaca gcgggggttg acaaaggcat 6600 gtacctgagg accctgttcg ggtacatagc gctaaacggg acttcaaaga aaacaaccca 6660 ttacgatgat gttgatataa tagggaacaa tattacagag actagtatag atagcagggg 6720 taaaataaat gtcgcaaccg cggtgaggca aatgctcagc ttctctagga taacacctac 6780 cggagcagca aaaggggcaa ctctgaggca aatgtgtgaa cctttcgcgg aagaagctag 6840 ggaatgttta gcaatattag ctagtaaagg catctactca caactcgcaa ccaaactctc 6900 caaattaggt caaaaggagc cacaagtaat gtttgatttc aatggaggac tcgatctagg 6960 tcgtatgtca gccactgaag cagcaactac gcagagtctt aacagtcgtc tatttcgcac 7020 agaaggtgca aaagctgtat tcgcagcgca gtcaagcgtt ggggaacaag ctgtggaaat 7080 atagatggat gactcaacgt ttctcaaggg tcggagttcg tttgcgagga gacgtagggc 7140 taataaacta ggtatatgta agtgtggggc gatatgcgtt aagcatgaac ccggttgtag 7200 gaaagaggca attagcctcc ataagatcca gcgattagag tgggttgata gaggcagagt 7260 aactgatagt gagacgctct atcccctact cagatactgg atctctaggg tttatccact 7320 atgcgagcac acactgcaga tagcgagcaa ttgctactgc gtggattgct tgtgtgatag 7380 gatcgaccta ctaatagacg aataaataaa cagcgtggtg tgagcgctat aatgaagtca 7440 cacctccgag agcacttaac tcaaggagag acaggcgtga ataaacac 7488 //