Dbfetch
ID JN419011; SV 1; circular; genomic DNA; STD; VRL; 2582 BP. XX AC JN419011; XX DT 20-MAR-2012 (Rel. 112, Created) DT 20-MAR-2012 (Rel. 112, Last updated, Version 1) XX DE Tomato crinkle leaf yellows virus isolate BR:Qui1:10 segment DNA-B, DE complete sequence. XX KW . XX OS Tomato crinkle leaf yellows virus OC Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. XX RN [1] RP 1-2582 RA Silva S.J.C., Castillo-Urquiza G.P., Hora B.T.Jr., Assuncao I.P., RA Lima G.S.A., Pio-Ribeiro G., Mizubuti E.S.G., Zerbini F.M.; RT "Species diversity, phylogeny and genetic variability of begomovirus RT populations infecting leguminous weeds in northeastern Brazil"; RL Plant Pathol. 0:0(2011). XX RN [2] RP 1-2582 RA Silva S.J.C., Castillo-Urquiza G.P., Hora B.T.Jr., Assuncao I.P., RA Lima G.S.A., Pio-Ribeiro G., Mizubuti E.S.G., Zerbini F.M.; RT ; RL Submitted (31-JUL-2011) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, Minas Gerais 36570-000, Brazil XX DR MD5; 7d589f2d4b3a6328f010993c918d6574. XX FH Key Location/Qualifiers FH FT source 1..2582 FT /organism="Tomato crinkle leaf yellows virus" FT /segment="DNA-B" FT /host="Macroptilium atropurpureum" FT /isolate="BR:Qui1:10" FT /mol_type="genomic DNA" FT /country="Brazil" FT /collection_date="25-Jun-2010" FT /db_xref="taxon:1129036" FT CDS 455..1225 FT /codon_start=1 FT /product="nuclear shuttle protein" FT /note="NSP" FT /db_xref="GOA:H8ZQR7" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR001530" FT /db_xref="UniProtKB/TrEMBL:H8ZQR7" FT /protein_id="AFD54567.1" FT /translation="MYFNKNRRGWTSTYRRNYARIPTFKRSYVFSRNDGKRRLGNPNKA FT QDDIKMSSHRIHENQYGPEFVLGHNTAISTFITYPSLGKTEPSRTRSYIKLKRLRFKGT FT VKVERVHTDVNMNGLPPKIEGVFSLVVVVDRKPHLSSSGSLYTFDELFGARIHSHGNLA FT ITPALQDRFYIRHVVKRVLSVEKDTTMVDLDGTTTLSSRRYNCWANFRDLDRESCNGVY FT ANISKNAILVYYCWMSDTVSKASTFVSFDLDYVG" FT CDS complement(1315..2196) FT /codon_start=1 FT /product="movement protein" FT /note="MP" FT /db_xref="GOA:H8ZQR8" FT /db_xref="InterPro:IPR000211" FT /db_xref="UniProtKB/TrEMBL:H8ZQR8" FT /protein_id="AFD54566.1" FT /translation="MSSQLVVPPNAFNYVESQRDEYQLSHDLTEIVLQFPSTASQISAK FT LSRSCMKIDHCVIEYRQQVPINATGSVIVEIHDKRMTDNESLQASWTFPIRCNIDLHYF FT SSSFFSLKDPIPWKLYYRVSDTNVHQRTHFAKFKGKLKLSTAKHSVDIPFRAPTVKILS FT KQFSDKDIDFAHVGYGTWERKLVRCASTSKFGLNGPIEIKPGESWASRSTIGLSNSCVD FT SERGNDLHPYRELNRLGTTILDPGESASIVAANRAQSNITLSLAQLNEIVRSTVQECIN FT TNCTPSEPKSLK" XX SQ Sequence 2582 BP; 751 A; 501 C; 546 G; 783 T; 1 other; accggatggc cgcgcgatcc cccccccctc gcgcaatcct ggccctccac gtgtacccct 60 gaatgtaatt tagcgagaat ttgaagtccg cgaatttagt tgagcgcttt ttttgagttc 120 cgctaacgga tggccgccac gtgcatcaat ctgagaccgt tcaattaaat acgataagcg 180 gaactctgac gaattgtacg atgtgttttt gaccgttgaa tatttttgaa attcgtccgt 240 tagattgcac atgatatttg atttattgtg aattgtgcta tcttaaaggg ttatttgtac 300 aacaacttga catgtgtgca atcgtacaat atatgctacg tggaccaatt aaatattgcc 360 tgggaaacca aaataacgca ttaatgcaac aagttccgaa tatataagac gtatgtaacc 420 aatattcagg cacgtccaat tgtttatttt gaacatgtat ttcaataaaa ataggcgtgg 480 ttggacgtcc acttatcgcc gtaattacgc aagaatacct acgtttaaaa ggtcctacgt 540 tttttcgcgt aacgatggga aacgtcgctt gggtaatcca aacaargccc aagacgatat 600 caagatgtcc tctcatcgga tccacgaaaa ccaatatggg cctgaatttg tattgggcca 660 caatacagcg atatccacat ttattacgta ccccagtctt ggtaagacgg agccaagtcg 720 tacaagatca tatattaagt tgaagcgact gcgttttaaa ggaacggtta aggttgaacg 780 ggttcatacc gatgtgaaca tgaatgggtt accacctaag attgaaggtg tattttcgtt 840 ggtcgttgtc gtcgatcgaa aaccacatct aagctcatct ggtagtctat acaccttcga 900 tgagttattt ggtgctagga tccacagtca tggcaatcta gctataactc ctgctttgca 960 agatcgtttc tacatacgcc atgtggtaaa acgagtattg tctgttgaga aggacacgac 1020 tatggtagat cttgatggga cgacaacgtt atctagtagg cgttataatt gctgggctaa 1080 ttttagagac cttgatcgag aatcatgtaa tggtgtatat gcaaacataa gcaagaacgc 1140 cattttagtt tattattgtt ggatgtcgga tactgtgtct aaagcatcca cgtttgtatc 1200 atttgatcta gattatgtgg gataaattca aagatcaatt tgcaaattat aatattgaat 1260 taaaatgtca taacattttt catagctaac cattaacgtc cagaaaatca taatttattt 1320 aagagacttt ggttcggaag gagtacaatt ggtgttaata cattcttgga ctgtagacct 1380 aactatctca tttaactggg ctaacgataa cgtaatgttc gactgagccc tgtttgccgc 1440 aacgatcgat gctgattcac ctgggtccaa tattgttgtg cccaatctgt taagctctct 1500 atatggatgt agatcgttgc ctctttcgga gtccacacat gaattgctga gaccaattgt 1560 acttctggaa gcccatgact ctccgggttt gatttcaatt gggccgttca gcccaaactt 1620 gctagtcgaa gcgcaccgga ctagtttcct ttcccatgtc ccgtaaccca catgggcgaa 1680 atcgatatcc ttatctgaga attgcttcga taagatttta actgttggtg cccggaaagg 1740 gatatccact gagtgtttcg ccgtggatag tttgagcttc cctttgaact tggcgaaatg 1800 tgtcctttga tgaacattcg tatcgctaac cctgtagtac aacttccacg gaatagggtc 1860 tttcagtgaa aagaatgacg acgagaaata atgtaagtct atgttacatc taattgggaa 1920 agtccatgac gcttgtaatg attcgttatc cgtcattctt ttgtcatgga tttctactat 1980 gaccgaccct gtagcgttaa ttggaacctg ctgcctgtat tcgataacgc aatggtcgat 2040 cttcatacag cttctactaa gtttcgcact aatttgcgac gccgttgatg gaaattgcag 2100 aacaatttca gtaagatcat gtgataattg atactcatca cgctgggact cgacataatt 2160 aaaagcattt ggaggaacta ctaactgaga actcattata tttgtaaaag gccgcgcagc 2220 gcagtcgata actgaaatga ataagcgaaa acgagatgaa caatttaata tgatatgtca 2280 ggagaaatgg tgttgaataa catgtaataa gagttaaatg tataatatat tgacgataat 2340 gagtaattgt gacaggttcg tatttataga caaccagtga taagatgttt tgaatatgaa 2400 acgacgaata ccactgtcgt ttttataacc gaatggcatt ctcgtaaata aaagggtgtc 2460 accaattggg gtctcgctca aactccgcta gtcaattggt gactggtgta caatatatag 2520 tagaaggctc tatagaactt tcaatctcgt tcgcacacgt ggcggccatc cgttataata 2580 tt 2582 //