ID JN416775; SV 1; linear; genomic RNA; STD; VRL; 2591 BP. XX AC JN416775; XX DT 28-SEP-2011 (Rel. 110, Created) DT 04-MAY-2012 (Rel. 112, Last updated, Version 3) XX DE Prunus necrotic ringspot virus isolate Pch12 segment RNA2, complete DE sequence. XX KW . XX OS Prunus necrotic ringspot virus OC Viruses; Riboviria; Bromoviridae; Ilarvirus. XX RN [1] RP 1-2591 RX PUBMED; 22327390. RA Cui H., Hong N., Wang G., Wang A.; RT "Molecular characterization of two prunus necrotic ringspot virus isolates RT from Canada"; RL Arch. Virol. 157(5):999-1001(2012). XX RN [2] RP 1-2591 RA Cui H., Hong N., Wang G., Wang A.; RT ; RL Submitted (02-AUG-2011) to the INSDC. RL Southern Crp Protection and Food Research Centre, Agriculture and Agri-Food RL Canada, 1391 Sandford Street, London, Ontario N5V 4T3, Canada XX DR MD5; 9b4b495e4a2aff0316b6e43b827223f1. XX FH Key Location/Qualifiers FH FT source 1..2591 FT /organism="Prunus necrotic ringspot virus" FT /segment="RNA2" FT /host="peach" FT /isolate="Pch12" FT /mol_type="genomic RNA" FT /country="Canada" FT /collected_by="Hongguang Cui" FT /collection_date="May-2011" FT /identified_by="Hongguang Cui" FT /db_xref="taxon:37733" FT 5'UTR 1..26 FT CDS 27..2426 FT /codon_start=1 FT /product="replicase P2" FT /db_xref="GOA:G5CZ68" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:G5CZ68" FT /protein_id="AEP04411.1" FT /translation="MNPLNQLLSHGCSAISSALHRDVAYTQISDECFDSHFTQISTEYF FT LTTSARKLFEAYMVTMFLKKHMSYVFEDFIGSEMGPYVQTRWRIVFDLDEVEEEYVYKP FT DFYHYDVYDYEMGVDIPASIMDDIPFCEDAEAVTCRNCGSFDEIETVYQAATSSDESCT FT NVCDVDAPHDTIKWSDEPDLMVDDPSKLHDLDDEVPPLQLETVGRVVQSVEPLVPDINS FT FETNQLHLVKEVVLDRFESILECHEKVLARNDWKSLAMYVPTGEIPSVSDILEIPVKHT FT QPEFIQMAIDEMLPGVSDLDDRFFQEIVETSDINLEIDRASIDMSVFNDWTPKSGRLNG FT LFQTGNISKRVPTFREASLAIKKRNLNVPDLQQVLHEDDEARLIANKFINTVIDPNKLA FT QFPGYISEGEMGYFNKYLSGKAVPDDAFVDPCALVSMDKYRHMIKTQLKPVEDTSQLFE FT RPLAATITYHDKGKVMSTSPIFLMMCNRLLLCLNDKISIPSGKHHQLFSLDPFAFEMTK FT EFKEIDFSKFDKSQQRLHHLIQFHIFTALGAPKDFLDMWFGSHEISHIRDGPCGIGFSV FT NYQRRTGDACTYLGNTIITLSALAYMYDLLDPNVTFVIASGDDSLIGSIKPLDRSEEFK FT FVTLFNFEAKFPHNQPFVCSKFLCLLPTVSGGKKVLAVPNALKLNIKLGVKDLAPCVFD FT AWYKSWLDLIWYFDNYLVVSTMKDYISHRYLRRQTCYQEGAMLAYRTIFSSKEKCLKSL FT FGITSKDLEAMLPMSKNGKGSNRAECSKNNKTSRPPKSTRCRNSAN" FT 3'UTR 2427..2591 XX SQ Sequence 2591 BP; 718 A; 473 C; 619 G; 781 T; 0 other; gtttttgtac tcgtggttga gttacaatga atcctctaaa tcagctattg tcacatgggt 60 gttctgctat ttcctcagct ttacatagag atgttgctta cacccagata tctgatgagt 120 gttttgattc tcatttcact cagatttcca ccgaatactt tcttactact tccgctagga 180 aattgtttga agcgtacatg gtgacgatgt ttcttaagaa gcatatgagt tatgtcttcg 240 aggactttat aggatccgag atgggtccgt acgtccagac cagatggcgg atcgtttttg 300 atctggacga ggtcgaagaa gaatatgtct acaaacccga cttctatcat tacgatgttt 360 atgattacga aatgggtgtg gatatacctg catcgataat ggacgatatt ccattctgtg 420 aagatgcaga agcagtgacg tgtcgcaatt gtggtagttt cgatgagata gaaacggtgt 480 accaagcagc gacgtcttct gacgagtcat gtaccaacgt ttgtgatgtt gatgcccctc 540 acgataccat caagtggtct gacgaacccg atttgatggt tgatgaccca tcgaagttgc 600 acgatttgga cgatgaagtt ccgccgttgc aattagagac tgttggtcgg gtagtgcagt 660 ccgtggagcc tttggtcccg gacattaact cgttcgagac gaatcagttg cacttagtga 720 aggaagtggt attggacaga tttgagtcca tacttgaatg tcacgaaaag gtattggcta 780 gaaacgattg gaagtctcta gctatgtatg taccgactgg tgagattcca tcagttagtg 840 acatattgga aattccggta aaacacacgc aaccggagtt cattcagatg gcaatagatg 900 agatgttgcc aggagtttca gatcttgatg ataggttttt ccaagaaata gttgaaacgt 960 ctgacattaa tctggagata gacagagcat ctatcgatat gtcagtgttc aacgactgga 1020 ctccgaagtc gggtaggctg aatggactgt tccaaacagg taatatctcg aaaagagtac 1080 cgactttccg cgaagcgtct ctcgctatta agaagcggaa tttgaatgtc cctgatttgc 1140 agcaagtttt gcatgaggac gatgaagcta gattaatagc taataagttc ataaacaccg 1200 ttatcgatcc gaataaattg gctcagtttc caggatacat atccgaaggt gaaatgggtt 1260 atttcaataa gtatctatca gggaaagctg tacccgatga tgcttttgtg gatccatgtg 1320 cgttggtctc gatggacaag tatcgacata tgattaagac acaacttaaa cctgtcgaag 1380 atacgtctca attgttcgag agacctttag cggcaactat tacttatcat gacaaaggaa 1440 aggttatgtc aacatcaccg atattcctga tgatgtgtaa tcgtttgctg ctgtgtttga 1500 acgataagat ttccattcct tcgggaaaac atcatcagtt gttctcgttg gatccctttg 1560 cgtttgaaat gacgaaagag tttaaagaga ttgatttttc gaaattcgat aagtctcagc 1620 aaaggttaca tcacctgatt caatttcaca ttttcaccgc tttaggtgct ccgaaagatt 1680 tcctcgatat gtggtttgga tcacacgaga tatcgcacat ccgtgatgga ccttgtggta 1740 tcggatttag tgtgaattac cagaggcgta caggagatgc atgtacgtat ttgggtaata 1800 ctattattac tttgtctgcc ctggcgtaca tgtatgactt gctggatccg aacgtgacgt 1860 ttgtcatagc ttcaggagac gatagtctta taggttcaat taaacctctg gaccgatctg 1920 aagagtttaa atttgtcacg ttgttcaatt ttgaagcgaa atttccacat aaccaacctt 1980 ttgtgtgcag taaattttta tgtttactgc ctactgtgag tgggggaaag aaggttctgg 2040 cagttccgaa tgctttaaag ttgaatataa aactaggtgt taaggatctg gcaccatgtg 2100 tttttgatgc ttggtataaa tcctggttgg atttaatttg gtacttcgac aattacctgg 2160 ttgtgtcgac tatgaaagac tatatcagcc ataggtattt aagaagacag acatgttacc 2220 aagaaggtgc gatgttggct tataggacga tattctcgag taaagagaaa tgtttgaagt 2280 ccttgtttgg tatcacttcc aaagatctgg aagcgatgtt gcccatgagt aagaatggga 2340 aaggctctaa tagagccgag tgttcaaaga ataacaaaac atctagacct ccgaagagta 2400 ctagatgtag gaattctgcg aactagaacg agttgaacgc gttcgaattt cctcgaatag 2460 agaagaatcg taccaccgtg tgggtttgcg attagttcct agagagttgc ttccggctct 2520 cgagttcata ggtacttacc tgctttgcag atgcctacga cgtgaagtcg tagatgcccc 2580 gatagggaag c 2591 //