ID JN416774; SV 1; linear; genomic RNA; STD; VRL; 3332 BP. XX AC JN416774; XX DT 28-SEP-2011 (Rel. 110, Created) DT 04-MAY-2012 (Rel. 112, Last updated, Version 3) XX DE Prunus necrotic ringspot virus isolate Pch12 segment RNA1, complete DE sequence. XX KW . XX OS Prunus necrotic ringspot virus OC Viruses; Riboviria; Bromoviridae; Ilarvirus. XX RN [1] RP 1-3332 RX PUBMED; 22327390. RA Cui H., Hong N., Wang G., Wang A.; RT "Molecular characterization of two prunus necrotic ringspot virus isolates RT from Canada"; RL Arch. Virol. 157(5):999-1001(2012). XX RN [2] RP 1-3332 RA Cui H., Hong N., Wang G., Wang A.; RT ; RL Submitted (02-AUG-2011) to the INSDC. RL Southern Crp Protection and Food Research Centre, Agriculture and Agri-Food RL Canada, 1391 Sandford Street, London, Ontario N5V 4T3, Canada XX DR MD5; 463d5c20c176eb3c060206b484d93f9c. XX FH Key Location/Qualifiers FH FT source 1..3332 FT /organism="Prunus necrotic ringspot virus" FT /segment="RNA1" FT /host="peach" FT /isolate="Pch12" FT /mol_type="genomic RNA" FT /country="Canada" FT /collected_by="Hongguang Cui" FT /collection_date="May-2011" FT /identified_by="Hongguang Cui" FT /db_xref="taxon:37733" FT 5'UTR 1..29 FT CDS 30..3167 FT /codon_start=1 FT /product="replicase P1" FT /db_xref="GOA:G5CZ67" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:G5CZ67" FT /protein_id="AEP04410.1" FT /translation="MDPESLSQLLVSTLQKQCADETSTVGKVFSERGVALVERSIPKAE FT GERLNISFALSAEQKSLLSRNFPGRDIHFAQRDSSSHSFAAAHRLLETDYIYKCFGTTE FT EAVIDLGGNFVSHIKQKRYNVHSCCPLLDDRDGARFTERLISLKTYLRTHKEERHEADY FT CECRFEECPRRADYVMAVHAVSDLPITDLCAALTRKGTKKMILSIMMDPNMLLRDVGEI FT PNFNVRWEIDRTEDIIRFDFIDAPCLGYQHKFSVLQQYLTTNAVIVGDKAAYRVERKSD FT FGGVFIVDITAVAGYKPGMVVGGTRSCAWSTLIRNKTVVHTVDGEDHWWYDVTRRSKIL FT VDTKVLTKVLEASFRQFKPNVEPESMIQNIATMLSSSTNYTVINGVTLQAGESLPYGDY FT VAIATTIYVRTKRMYDSIRTNIDRLNETRSVPIKDVAQGEVYGKLGNALGSLFAPTATT FT QVIAGPKGREDVYELHPKSWSDEVRNFFYCCVGRQGVGHTLLSDPDLFVPLEVVLQTKW FT TGGSVLTVKTLFDDVVKPEYDRVEEELQRVRDDRDKSEKLQKAILTVAKWIEAHPDGKL FT PKGLGEVAALVPDMVDLRESVVAVEPKAVVNKYASEIQEAITYYELEADISAKKLRSVG FT EHCNWSKKFISTIWAGDESRRVYIPQTDSWLGPPNVPKPEPTGQYERGMTADGYVLMAW FT SGSSGQKFDGPLQVDAVCRRELSRYPAIFFDKSCEFAANLRLLPALREALTVEAKFTRK FT LMDGVAGCGKTTKILNECKMCNDQPDLVLTSNRSSAMELREKLPGSQLLRSTRVRTSDS FT YLMNPKRPSSVRVIFDECFLQHAGCVYAAASLAGAEELILFGDTKQIPFVSRIPHFRLK FT DHLVSADEKVMSNLTYRCPADATMALSKWFYRRNVKTANTTLRSMSVKPIVSVSQIDRD FT FDLYMTHTQAEKHTLIASGVVPRDKVFTSAEAQGKTEGRAALVRLSRTSMSLFTGKDPL FT MGPCHSLVALSRFKRQFVYFTVADTDSDDLIAKAIRDVSNSSDDAVSSYIHRDHKI" FT 3'UTR 3168..3332 XX SQ Sequence 3332 BP; 901 A; 638 C; 883 G; 910 T; 0 other; gtttttagtt cgtggttgaa ctatttatta tggatccaga atctctatca cagttgcttg 60 tttctacctt acagaaacaa tgcgctgatg aaacctcgac agtggggaag gtattctccg 120 agagaggtgt agctctggtt gagcgatcta ttccgaaggc cgaaggtgaa cgacttaata 180 taagttttgc cctgagtgcc gagcagaagt cattgttgtc tcgaaatttt cctggtagag 240 acatacattt tgcacaacga gactcttcga gtcatagttt tgcagcggct cataggttgt 300 tagaaaccga ttatatttat aagtgcttcg gcacgactga agaggcggtg attgatcttg 360 ggggaaattt cgtttctcac ataaagcaga aaaggtataa tgtgcatagc tgttgtccgc 420 ttctagatga ccgcgatggt gccagattta ccgaacgttt gatctcattg aagacctact 480 tgcgaactca caaggaggaa agacacgagg cagactattg cgaatgccgc ttcgaggagt 540 gcccgagacg ggccgactat gtaatggccg tgcacgctgt tagcgacttg cctatcacag 600 atctttgtgc cgcattgact aggaaaggga caaagaagat gattttgtcc ataatgatgg 660 atccgaatat gttgttgagg gatgttggtg aaataccgaa cttcaacgtt cgttgggaga 720 tagacagaac cgaggatatc ataaggttcg attttatcga tgccccgtgt ttgggatacc 780 aacacaagtt ttctgtatta cagcaatatc tcaccacgaa tgctgttata gtgggagata 840 aagcagctta tcgcgttgag cgaaaaagcg atttcggcgg tgtgttcatt gtggatataa 900 cggccgttgc tgggtacaag ccgggcatgg tagtgggtgg tactagatct tgcgcgtggt 960 ctactctaat ccgaaacaaa accgttgttc atactgtcga cggtgaggat cattggtggt 1020 atgatgttac tcgcagatcg aagatccttg tggacactaa ggtattgacg aaagtgttgg 1080 aagcaagttt ccgtcaattt aaaccgaatg tggagcctga gtcgatgatt cagaacatcg 1140 cgacgatgtt gtcttcttcg acgaattaca ctgtgattaa cggtgttaca ctccaagcag 1200 gtgagagtct accttatggc gattatgtag ccatagccac cactatttac gtgaggacca 1260 agaggatgta tgattcgata agaaccaaca tcgatagatt aaacgaaacc cgatcagtcc 1320 cgataaagga cgtagcacag ggtgaagttt acggtaagtt gggtaatgct ttaggcagtt 1380 tgtttgcgcc gactgcgact acccaagtta ttgcaggtcc gaaaggtaga gaggatgttt 1440 atgagttgca tccgaagtct tggtctgacg aagttagaaa ttttttctat tgttgtgttg 1500 gtagacaagg agtcggacat actctactga gcgacccgga tttgttcgta ccactcgaag 1560 ttgttttaca gaccaagtgg actggtggtt cggtcttgac tgtaaaaact ctgtttgacg 1620 atgtagtcaa accagaatac gatagagtgg aagaggaact tcagcgcgtg cgagatgaca 1680 gagataagtc agagaaacta cagaaagcga tcttgaccgt cgcgaagtgg atagaagccc 1740 atcccgatgg aaagttaccc aagggtttag gcgaggtagc agcgctagtt ccagatatgg 1800 tagatttgcg tgagtccgtc gtagctgtcg aaccaaaggc cgttgtgaat aagtatgcat 1860 ctgaaattca agaagctatt acttattacg agctagaagc tgacatttcc gcgaagaaat 1920 tgaggtctgt gggtgaacac tgtaattggt cgaagaaatt tatttcgact atttgggcgg 1980 gcgatgagtc ccggcgtgtg tatattccac agaccgacag ttggttagga ccacccaatg 2040 ttccgaaacc agaaccgact ggtcaatacg aaagggggat gactgctgat gggtatgtgc 2100 tcatggcctg gagtggttcc agtggtcaaa aatttgacgg tccattacaa gtcgacgctg 2160 tgtgtcgtag agaattgtcg cgttaccccg cgatattttt cgataagtcg tgcgagttcg 2220 ccgccaactt aaggttgtta ccggcattac gagaagcact cactgtagag gcgaagttta 2280 cgcggaagtt gatggatggc gtagctggat gtggaaaaac cacgaagatc ctcaacgaat 2340 gtaagatgtg taacgatcag cctgatcttg ttttgactag caacaggtcc tcggcgatgg 2400 agctgaggga gaaactacca ggtagtcaat tattacgatc cactcgagtt aggacgtcag 2460 actcatattt gatgaatccg aagagacctt catcggttcg agtgattttt gacgagtgtt 2520 tcttacaaca cgctggttgc gtttacgcgg ctgctagtct agcaggagct gaggagttaa 2580 tattgtttgg tgatacgaaa caaattccct ttgtatcaag gattcctcat ttccgattaa 2640 aggaccattt agtgtcggct gacgaaaagg tgatgtcgaa tttgacttac cgatgtcctg 2700 ctgacgccac tatggctctt tcgaaatggt tttaccgaag gaacgtgaaa acagcaaaca 2760 ccacacttag gagtatgagt gttaagccga ttgtgtctgt cagtcaaatc gaccgggact 2820 ttgatttgta tatgacgcat acacaggcgg agaaacacac actgatagcc agtggtgtag 2880 ttccgagaga taaggttttc acttcagctg aagcacaagg gaaaaccgag ggtagagccg 2940 cgctagttcg attgtcaaga actagtatga gtctgtttac tggtaaggac ccgctgatgg 3000 gtccttgtca tagtttggta gctctgtctc gatttaagag acagtttgtt tacttcactg 3060 tggctgatac ggattcagac gatttgattg ctaaggcaat cagagatgtt agtaacagta 3120 gtgacgatgc agtcagtagt tacatacatc gagatcataa aatttagggt gagatgaaca 3180 cacccgattc ccagattatg gaagaaccgt accaccgtgt ggatttatcg gttatctctt 3240 ttgaagttgt ttccttactt cagtgttctg agagattacc tgcgtttgca gatgcctaca 3300 acgagaagtt gtagatgccc cgttagggaa gc 3332 //