ID JN416771; SV 1; linear; genomic RNA; STD; VRL; 3333 BP. XX AC JN416771; XX DT 28-SEP-2011 (Rel. 110, Created) DT 04-MAY-2012 (Rel. 112, Last updated, Version 3) XX DE Prunus necrotic ringspot virus isolate Chr3 segment RNA1, complete DE sequence. XX KW . XX OS Prunus necrotic ringspot virus OC Viruses; Riboviria; Bromoviridae; Ilarvirus. XX RN [1] RP 1-3333 RX PUBMED; 22327390. RA Cui H., Hong N., Wang G., Wang A.; RT "Molecular characterization of two prunus necrotic ringspot virus isolates RT from Canada"; RL Arch. Virol. 157(5):999-1001(2012). XX RN [2] RP 1-3333 RA Cui H., Hong N., Wang G., Wang A.; RT ; RL Submitted (02-AUG-2011) to the INSDC. RL Southern Crp Protection and Food Research Centre, Agriculture and Agri-Food RL Canada, 1391 Sandford Street, London, Ontario N5V 4T3, Canada XX DR MD5; cb3805f0730e3003bdb108741db110d4. XX FH Key Location/Qualifiers FH FT source 1..3333 FT /organism="Prunus necrotic ringspot virus" FT /segment="RNA1" FT /host="cherry" FT /isolate="Chr3" FT /mol_type="genomic RNA" FT /country="Canada" FT /collected_by="Hongguang Cui" FT /collection_date="May-2011" FT /identified_by="Hongguang Cui" FT /db_xref="taxon:37733" FT 5'UTR 1..30 FT CDS 31..3168 FT /codon_start=1 FT /product="replicase P1" FT /db_xref="GOA:G5CZ63" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:G5CZ63" FT /protein_id="AEP04406.1" FT /translation="MDPESLSQLLVSTLQKQCADETSTVGKVFSERGVALVERSIPKAE FT GERLNISFALSAEQKSLLSRNFPGRDIHFAQRDSSSHSFAAAHRLLETDYIYKCFGTTE FT EAVIDLGGNFVSHIKQKRYNVHSCCPLLDDRDGARFTERLISLKTYLRTHKEERHEADY FT CECRFEECPRRADYVMAVHAVSDLPITDLCAALTRKGTKKMILSIMMDPNMLLRDVGEI FT PNFNVRWEIDRTEDIIRFDFIDAPCLGYQHKFSVLQQYLTTNAVIVGDKAAYRVERKSD FT FGGVFIVDITAVAGYKPGMVVGGTRSCAWSTLIRNKTVVHTVDGEDHWWYDVTRRSKIL FT VDTKVLTKVLEASFRQFKPNAEPESMIQNIATMLSSSTNYTVINGVTLQAGESLPYGDY FT VAIATTIYVRTKRMYDSIRTNIDRLNETRSVPIKDVAQGEVYGKLGNALGSLFAPIATT FT QVIAGPKGREDVYELHPKSWSDEVRNFFYCCVGRQGVGHTLLSDPDLFVPLEVVLQAKW FT TGGSVLTVKTLFDDVVKPEYDRVEEELQRVRDDRDKSEKLQKAILTVAKWIEAHPDGKL FT PKGLGEVAALVPDMVDLRESVVAVEPKAVVNKYASEIQEAITYYELEADISAKKLRSVG FT EHCNWSKKFISTIWAGDESRRVYIPQTDSWLGPPNVPKPEPTGQYERGMTADGYVLMAW FT SGSSGQKFDGPLQVDAVCRRELSRYPAIFFDKSCEFAANLRLLPALREALTVEAKFTRR FT LMDGVAGCGKTTKILNECKMCNDQPDLVLTSNRSSAMELREKLPGSQLLRSTRVRTSDS FT YLMNPKRPSSVRVIFDECFLQHAGCVYAAASLAGAEELVLFGDTKQIPFVSRIPHFRLK FT DHLVSADEKVMSNLTYRCPADATMALSKWFYRRNVKTANTTLRSMSVKPIVSVSQIDRD FT FDLYMTHTQAEKHTLIASGVVPRDKVFTSAEAQGKTEGRAALVRLSRTSMSLFTGKDPL FT MGPCHSLVALSRFKRQFVYFTVADTDSDDLIAKAIRDVSNSSDDAVSSYIHRDHKI" FT 3'UTR 3169..3333 XX SQ Sequence 3333 BP; 905 A; 643 C; 880 G; 905 T; 0 other; gtttttagtt cgtggttgaa ctaatttatc atggaccctg aatctctatc acaattgctt 60 gtttctacct tacagaaaca atgcgctgat gaaacctcga cagtggggaa ggtattctcc 120 gagagaggtg tagctctggt tgagcgatct attccgaagg ccgaaggtga acgacttaat 180 ataagttttg ccctgagtgc cgagcagaag tcactgttgt ctcgaaattt tcccggtaga 240 gacatacact ttgcacaacg agactcttcg agtcatagtt ttgcagcagc tcataggttg 300 ttagaaaccg attatattta taagtgcttc ggcacgactg aagaagcggt gattgatctt 360 gggggaaatt tcgtttctca cataaagcag aaaaggtata atgtgcatag ctgttgtcca 420 cttctagatg accgcgatgg tgccagattt accgaacgtt tgatctcatt gaagacctac 480 ttgcgaactc acaaggagga aagacatgag gcagactatt gcgaatgccg cttcgaggag 540 tgcccgagac gggccgacta tgtgatggcc gtgcacgctg ttagcgactt gcctatcaca 600 gatctttgtg cggcattgac taggaaaggg acaaagaaga tgattttgtc cataatgatg 660 gatccgaata tgttgctgag ggacgttggt gaaataccga atttcaacgt tcgttgggag 720 atagacagaa ccgaggatat cataaggttc gattttatcg atgccccgtg tttgggatac 780 caacacaagt tttctgtatt acagcaatat ctcaccacga atgctgttat agtgggagat 840 aaagcagctt atcgcgttga gcgaaaaagc gatttcggcg gtgtattcat tgttgatata 900 acggccgttg ctgggtacaa gccgggcatg gtagtgggtg gtactagatc ttgcgcgtgg 960 tctactctaa tccgaaataa aaccgttgtt catactgtcg acggtgagga tcattggtgg 1020 tatgatgtta ctcgcagatc gaagatcctt gtggacacta aggtattgac gaaagtgttg 1080 gaagcaagtt tccgtcaatt taaaccgaat gcggagcctg agtcgatgat tcagaacatc 1140 gcgacgatgt tgtcttcttc gacgaattac actgtgatta acggtgtcac actccaagca 1200 ggtgagagtc taccttatgg cgattatgta gccatagcca ccactattta cgtgaggacc 1260 aagaggatgt atgattcgat aagaaccaac atcgatagat taaacgaaac ccgatcagtc 1320 ccgataaagg acgtagcaca gggtgaagtt tatggtaagt tgggtaatgc cttaggcagt 1380 ttgtttgcac cgattgcgac tacccaagtt attgcaggtc cgaaaggtag agaggatgtt 1440 tatgagttgc atccgaagtc gtggtctgac gaagttagaa atttcttcta ttgttgtgtt 1500 ggtagacaag gagtcggaca tactctactg agcgacccgg atttgttcgt accactcgaa 1560 gttgttttac aggccaagtg gactggtggt tcggtcctga ctgtaaaaac tctgtttgac 1620 gatgtagtca aaccagaata cgatagagtg gaagaggaac ttcagcgcgt gcgagatgac 1680 agagataagt cagagaaact acagaaagcg atcttgaccg tcgcgaagtg gatagaagcc 1740 catcccgatg gaaagttacc caagggttta ggcgaggtag cagcgctagt tccagatatg 1800 gtagatttgc gtgagtccgt cgtagctgtt gaaccaaagg ccgttgtgaa taagtatgca 1860 tctgaaattc aagaagctat tacttattac gagctagaag ctgacatttc cgcgaagaaa 1920 ttgaggtctg tgggtgaaca ctgtaattgg tcaaagaaat ttatttcgac tatttgggcg 1980 ggcgatgagt cccggcgtgt gtatattcca cagaccgaca gttggttagg accacccaat 2040 gttccgaaac cagaaccgac tggtcaatac gaaaggggaa tgaccgctga tgggtatgtg 2100 ctcatggcct ggagtggttc cagtggtcaa aaatttgacg gtccattaca agtcgacgct 2160 gtgtgtcgta gagaattgtc gcgttacccc gcgatatttt tcgataaatc gtgcgagttc 2220 gccgccaact taaggttgtt accggcatta cgagaggcac tcactgtaga ggcgaagttt 2280 acacggaggt tgatggatgg tgtagctgga tgtggaaaaa ccacgaagat cctcaacgaa 2340 tgtaagatgt gtaacgatca gcctgatctt gttttgacta gcaacaggtc ctcggcgatg 2400 gagttgaggg agaaactacc aggtagtcaa ttattacgat ccactcgagt taggacgtca 2460 gactcatatt tgatgaatcc gaagagacct tcatcggttc gagtgatttt tgacgagtgt 2520 ttcttacaac acgctggttg cgtttacgcg gctgctagtc tagcaggagc tgaggagtta 2580 gtattgtttg gtgatacgaa acaaattccc tttgtatcaa ggattcctca cttccgattg 2640 aaggaccatt tagtgtcggc tgacgaaaag gtgatgtcga atttgactta ccgatgtcct 2700 gctgacgcca ctatggctct ttcgaaatgg ttttaccgaa ggaacgtgaa gacagcaaac 2760 accacactta ggagtatgag tgttaaaccg attgtgtctg tcagtcaaat cgaccgggac 2820 tttgatttgt atatgacgca tacacaggcg gagaaacaca cactgatagc cagtggtgta 2880 gttccgagag ataaggtttt cacttcagct gaagcacaag ggaaaaccga gggtagagcc 2940 gcgctagttc gattgtcaag aactagtatg agtctgttta ctggtaagga cccgttgatg 3000 ggtccttgtc atagtttggt agctctgtct cgatttaaga gacagtttgt ttacttcact 3060 gtggctgata cggattcaga cgatttgatt gctaaggcaa tcagagatgt tagtaacagt 3120 agtgacgatg cagtcagtag ttacatacat cgagatcata aaatttaggg tgagatgaac 3180 acacccgatt cccagattat ggaagaaccg taccaccgtg tggatttatc ggttatctct 3240 tttgaagtcg tttccttact tcagtgttct gagagattac ctgcgtttgc agatgcctac 3300 aacgagaagt tgtagatgcc ccgttaggga agc 3333 //