ID JN411687; SV 1; circular; genomic DNA; STD; VRL; 2621 BP. XX AC JN411687; XX DT 18-OCT-2011 (Rel. 110, Created) DT 02-MAY-2018 (Rel. 136, Last updated, Version 3) XX DE Sida yellow mottle virus strain Cuba:Sancti Spiritus159-1:2009 segment DE DNA-A, complete sequence. XX KW . XX OS Sida yellow mottle virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2621 RX DOI; 10.1007/s00705-011-1123-8. RX PUBMED; 21964921. RA Fiallo-Olive E., Navas-Castillo J., Moriones E., Martinez-Zubiaur Y.; RT "Begomoviruses infecting weeds in Cuba: increased host range and a novel RT virus infecting Sida rhombifolia"; RL Arch. Virol. 157(1):141-146(2012). XX RN [2] RP 1-2621 RA Fiallo-Olive E., Navas-Castillo J., Moriones E., Martinez-Zubiaur Y.; RT ; RL Submitted (31-JUL-2011) to the INSDC. RL Fruticultura Subtropical y Fitopatologia, Instituto de Hortofruticultura RL Subtropical y Mediterranea 'La Mayora', Estacion Experimental La Mayora, RL Algarrobo-Costa, Malaga 29750, Spain XX DR MD5; f93ccd34e26f3da566a0da8944dfe5c7. XX FH Key Location/Qualifiers FH FT source 1..2621 FT /organism="Sida yellow mottle virus" FT /segment="DNA-A" FT /host="Sida rhombifolia" FT /strain="Cuba:Sancti Spiritus159-1:2009" FT /isolate="159-1" FT /mol_type="genomic DNA" FT /country="Cuba" FT /collected_by="E. Fiallo-Olive" FT /collection_date="May-2009" FT /db_xref="taxon:1093958" FT gene 196..951 FT /gene="AV1" FT CDS 196..951 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:G5CV21" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:G5CV21" FT /protein_id="AEQ38975.1" FT /translation="MPKRDLPWRSMAGTSKVSRNANYSPRAGSGPRGNKASEWVNRPMY FT RKPRIYRTLRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV FT KNDLRDRYQVMHKFYGKVTGGQYASNEQAIVKRFWKVNNYVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSIMN" FT gene complement(948..1346) FT /gene="AC3" FT CDS complement(948..1346) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancement protein" FT /db_xref="GOA:G5CV22" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:G5CV22" FT /protein_id="AEQ38976.1" FT /translation="MDSRTGEFITARQAENGVYIWEIENPLYFKMYRVEDPLYTRTRVY FT HVQIRFNHNLRRALHLHKAYLNFQVWTTSMTASGSTYLARFRHLVNMYLDQLGVISLNN FT VIRAVRFATDRSYVNHVLENHSIKFKFY" FT gene complement(1093..1482) FT /gene="AC2" FT CDS complement(1093..1482) FT /codon_start=1 FT /gene="AC2" FT /product="transactivator protein" FT /db_xref="GOA:G5CV23" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:G5CV23" FT /protein_id="AEQ38977.1" FT /translation="MRSSSPSQPPSIKIAHRQAKKRAIRRRRIDLQCGCSIYFHIDCTG FT HGFTHRGIHHCTSGGEWRVYLGDRKSPVFQDVQSRGPVVHQNEGVSRTDTVQSQPEESV FT ASPQSLPELPSLDDIDDSFWVNLFS" FT gene complement(1394..2479) FT /gene="AC1" FT CDS complement(1394..2479) FT /codon_start=1 FT /gene="AC1" FT /product="replication associated protein" FT /db_xref="GOA:G5CV24" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:G5CV24" FT /protein_id="AEQ38978.1" FT /translation="MPSVKRFKVSAKNYFLTYPQCSLSKEEALSQLQNLATPVNKKFIK FT ICRELHENGEPHLHVLVQFEGKYQCKNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYI FT DKDGDTLEWGEFQIDGRSARGGCQSTNDTYAKALNASSVEEALQIIKEEQPQHFFLQHH FT NLVANAHRIFQKAPEPWVPPFQLSSFTNVPDEMQEWADEYFGRGSAARPDRPLSLIVEG FT DSRTGKTMWARALGPHNYLSGHLDFNGRVYSNAVEYNVIDDVAPQYLKLKHWKELLGAQ FT KDWQSNCKYGKPVQIKGGIPAIVLCNPGEGSSYKEFLDKEENAGLRNWTIKNAIFITLT FT AALYQDSTQTGQEKGDQEAQD" FT gene complement(2065..2322) FT /gene="AC4" FT CDS complement(2065..2322) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:G5CV25" FT /protein_id="AEQ38979.1" FT /translation="MGSLISMCLYNSRENTSARITDSSIWSPQPGQHISIRTYRELNLA FT PTSSPTSTRTEIHWNGGNSRSTVEVLEEAANRLTTRMPRH" XX SQ Sequence 2621 BP; 641 A; 605 C; 628 G; 747 T; 0 other; accggatggc cgcgcgcccc ccctggtgcc gtacactctc gcgcgatctt taatttaaat 60 taaagcgtac tgctttgtgt ttgtccaatc atgttgcgtc tgacgagcct agatatttgc 120 aacaacttgg gccctaagtt gttgggtgtc cgttataaat taaagatgac tttggcccac 180 aatctttaac tcaaaatgcc taagcgcgat ctgccatggc gctcgatggc gggaacctca 240 aaggttagcc gcaatgctaa ctattctcct cgtgcaggta gtgggccaag aggaaacaag 300 gcctctgaat gggtgaacag gccaatgtac aggaagccca ggatctaccg gacgctgagg 360 acccccgatg tgcccagagg ctgtgaaggc ccatgtaagg tccagtccta tgaacagcgc 420 catgacatct cacatgtcgg gaaggtcatg tgcatctcgg atgtgacacg tggtaatggc 480 atcacccatc gtgtgggtaa gcgtttctgt gttaagtctg tgtatatctt agggaagatc 540 tggatggacg agaacatcaa gctcaagaac cacacgaaca gtgtcatgtt ctggttggtc 600 agagaccgta gaccgtatgg cacgcctatg gattttggtc aggtgtttaa catgttcgac 660 aacgagccaa gcactgccac ggtgaagaac gatctccgcg atcgttacca ggttatgcac 720 aagttctatg gcaaggtgac tggtggacag tatgccagca acgagcaggc tatagtcaag 780 aggttctgga aggtcaacaa ttatgtggtg tacaaccacc aagaggctgg caagtacgag 840 aatcacacgg agaacgccct gttattgtat atggcatgta ctcatgcatc taaccctgtg 900 tatgcaactc tgaagattcg gatctatttt tacgattcga ttatgaatta ataaaatttg 960 aattttattg aatgattttc cagtacatga tttacatacg atctgtctgt cgcgaatcga 1020 acagctctga ttacattgtt taacgaaatg acgcctaact gatctaaata catgttgact 1080 aaatgcctaa atctagctaa ataagttgac ccagaagctg tcatcgatgt cgtccagact 1140 tggaagttca ggtaggcttt gtggagatgc aacgctctcc tcaggttgtg attgaaccgt 1200 atctgtacgt gatacaccct cgttctggtg tacaacgggt cctctactct gtacatcttg 1260 aaatacaggg gattttcgat ctcccagata tacacgccat tctccgcctg acgtgcagtg 1320 atgaattccc ctgtgcgtga atccatgtcc cgtacagtct atgtggaagt agatggagca 1380 cccgcactgg agatcaatcc tgcgcctcct gatcgccctt ttcttggcct gtctgtgtgc 1440 tatcttgata gagggcggct gtgagggtga tgaagatcgc attcttgata gtccagtttc 1500 ttagtcctgc attttcctct ttgtccagga actctttata gctggaaccc tcaccaggat 1560 tgcaaagcac gattgctggg attccacctt taatttgaac aggcttaccg tatttgcaat 1620 ttgactgcca atctttttgg gcccccagca attctttcca gtgctttagc tttagatatt 1680 gcggtgcgac gtcatcaatg acgttatact ccaccgcgtt tgaatagact cgaccattga 1740 agtccaggtg tccactgaga tagttatgtg ggcctaacgc acgtgcccac atcgtcttcc 1800 ctgttcttga atcaccttct actatgagac ttaatggtct atctggccgc gcagcggaac 1860 ccctaccaaa atactcatcg gcccattctt gcatctcgtc cggaacgtta gtgaatgagg 1920 agagttgaaa cggaggtacc cacggttccg gagccttctg aaatatccga tgagcattgg 1980 caactaaatt gtgatgttga aggaagaaat gttgaggctg ctcttccttg attatttgca 2040 gcgcctcttc tacagaagag gcattcaatg ccttggcata cgtgtcgtta gtcgattggc 2100 agcctcctct agcacttcta ccgtcgatct ggaattcccc ccattccagt gtatctccgt 2160 ccttgtcgat gtaggacttg acgtcggagc tagatttagc tccctgtatg ttcggatgga 2220 aatgtgctga cctggttggg gagaccagat cgaagaatct gttattcttg cactggtatt 2280 ttccctcgaa ttgtacaagc acatggagat gaggctcccc attctcatga agctctctgc 2340 aaattttgat gaacttcttg ttaactggag ttgctaggtt ttgtaattgg gaaagtgcct 2400 cttcttttga cagagagcac tgtggataag tgaggaaata gtttttggct gagactttaa 2460 aacgcttaac cgatggcatt tttgtaataa gaaggggtac cccaattgga gtctctccaa 2520 acttgctcta tcaattgggg tttggggtct catttatact agaggtttct atagaactct 2580 caatctcgtt cgcacacgtg gcggccatcc gatataatat t 2621 //