ID   JN408721; SV 1; linear; genomic DNA; STD; VRL; 1103 BP.
XX
AC   JN408721;
XX
DT   21-DEC-2011 (Rel. 111, Created)
DT   21-DEC-2011 (Rel. 111, Last updated, Version 1)
XX
DE   Squash yellow mild mottle virus isolate 07-3143 coat protein (AV1) gene,
DE   partial cds; replication enhancer protein (AC3) and transcriptional
DE   activator protein (AC2) genes, complete cds; and replication associated
DE   protein (AC1) gene, partial cds.
XX
KW   .
XX
OS   Squash yellow mild mottle virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-1103
RA   Castro R., Hammond R., Rojas M., Gilbertson R., Hernandez E., Mora F.,
RA   Ramirez P.;
RT   "Distribution and incidence of viruses transmitted by whiteflies
RT   (Hemiptera: Aleyrodidae) in vegetables of economic importance, Cartago,
RT   Costa Rica";
RL   Unpublished.
XX
RN   [2]
RP   1-1103
RA   Castro R.;
RT   ;
RL   Submitted (28-JUL-2011) to the INSDC.
RL   Centro de Investigacion en Biologia Celular y Molecular, Universidad de
RL   Costa Rica, Ciudad de la investigacion, San Pedro de Montes de Oca, San
RL   Jose 11501-2060, Costa Rica
XX
DR   MD5; a93e8f446aea9210dac8b1c366465cc7.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1103
FT                   /organism="Squash yellow mild mottle virus"
FT                   /host="Cucurbita moschata"
FT                   /isolate="07-3143"
FT                   /mol_type="genomic DNA"
FT                   /country="Costa Rica:Cartago Province"
FT                   /collection_date="2007"
FT                   /PCR_primers="fwd_name: pav1v722, fwd_seq:
FT                   atatctgcagggnaarathtggatgga, rev_name: pac1c1960, rev_seq:
FT                   tggactgcagacnggnaaracnatgtgggc"
FT                   /db_xref="taxon:1051966"
FT   gene            <1..324
FT                   /gene="AV1"
FT   CDS             <1..324
FT                   /codon_start=1
FT                   /gene="AV1"
FT                   /product="coat protein"
FT                   /db_xref="GOA:G9HWP7"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:G9HWP7"
FT                   /protein_id="AEW22964.1"
FT                   /translation="MDFGQVFNMFDNEPSTATIKNDLRDRFQVLHRFYAKVTGGQYASN
FT                   EQALVRRFWKVNNHVVYNHQEAGKYDNHTENALLLYMACTHASNPVYATLKIRIYFYDS
FT                   ITN"
FT   gene            complement(321..725)
FT                   /gene="AC3"
FT   CDS             complement(321..725)
FT                   /codon_start=1
FT                   /gene="AC3"
FT                   /product="replication enhancer protein"
FT                   /db_xref="GOA:G9HWP8"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:G9HWP8"
FT                   /protein_id="AEW22967.1"
FT                   /translation="MVMDLRTWEDITVYQAENSVFIWEVPNPLYFKIYNVEDPLYTHTR
FT                   IYHIQIRFNHNLRRALNLHKAYLNFQVWTESIRASGTTYLNRFRHLVMLYLDRLGVVGL
FT                   NNVIRAVSWATDRSYVTGVIEDHKIKFNIY"
FT   gene            complement(466..861)
FT                   /gene="AC2"
FT   CDS             complement(466..861)
FT                   /codon_start=1
FT                   /gene="AC2"
FT                   /product="transcriptional activator protein"
FT                   /db_xref="GOA:G9I609"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:G9I609"
FT                   /protein_id="AEW22966.1"
FT                   /translation="MPNSYSSTAPSIKAQHKIAKTRAIRRRRIDLNCGCSIFLHLSCQK
FT                   NGNGFTHLGRHHCVSGGEFRFYLGSSKSPLFQDIQRGGSTLYAHQNIPHTNPVQPQPEE
FT                   STKSSQSVPKFPSMDGIDSSFWDDLFK"
FT   gene            complement(803..>1103)
FT                   /gene="AC1"
FT   CDS             complement(803..>1103)
FT                   /codon_start=2
FT                   /gene="AC1"
FT                   /product="replication associated protein"
FT                   /db_xref="UniProtKB/TrEMBL:G9HWQ0"
FT                   /protein_id="AEW22965.1"
FT                   /translation="SNDVKYNVIDEVCSHYLKLKHWKELIGAQRDWQSNCKYGKPVQIK
FT                   GGIPSIVLCNPGEGASYKDFLDKAENASLREWTLKNAKFIFLNCPLYQSTTQDR"
XX
SQ   Sequence 1103 BP; 302 A; 233 C; 235 G; 333 T; 0 other;
     atggatttcg gccaagtatt caacatgttc gacaacgagc ctagtactgc cactatcaag        60
     aacgatctcc gcgaccgttt ccaagtactt caccggttct atgcgaaagt taccggtgga       120
     caatacgcta gcaacgaaca agcattggta cggcgctttt ggaaggtgaa caaccatgtt       180
     gtgtacaacc accaagaagc agggaagtat gataaccata ccgagaacgc gttgttattg       240
     tatatggcat gtactcatgc ttctaaccct gtgtatgcga cattgaagat tcggatatat       300
     ttttatgatt cgataaccaa ttaataaata ttgaacttta ttttatgatc ttcaatgaca       360
     ccagttacat atgatcgatc tgtcgcccac gaaacagctc gtatgacgtt atttagacca       420
     acaacgccta atctatctaa atacaacata actaaatgcc taaatctatt taaataagtc       480
     gtcccagaag ctcgaatcga ttccgtccat acttggaaat ttaggtacgc tttgtgaaga       540
     tttagtgctc tcctcaggtt gtggttgaac cggatttgta tgtggtatat tctggtgtgc       600
     gtatagagtg gatcctccac gttgtatatc ttgaaataga ggggatttgg aacttcccag       660
     ataaaaacgg aattctccgc ctgatacaca gtgatgtctt cccaagtgcg taaatccatt       720
     accattcttt tgacaactga gatggaggaa tatggaacag ccgcagttca agtcgatgcg       780
     tcgtcgacgg atagctcttg ttttagcgat cttgtgttgt gctttgatag agggggcagt       840
     tgaggaatat gaatttggca tttttgagtg tccactctct aagtgatgca ttttcagctt       900
     tgtcgaggaa atctttatag ctggccccct ctccaggatt gcacagcacg attgatggga       960
     taccgccttt aatttgaacc ggctttccat atttacagtt ggactgccag tccctctggg      1020
     ccccgatcaa ttctttccag tgctttagct ttaaataatg tgagcaaacc tcatcaatga      1080
     cgttatactt gacgtcattc gag                                              1103
//