ID   JN408720; SV 1; linear; genomic DNA; STD; VRL; 1169 BP.
XX
AC   JN408720;
XX
DT   21-DEC-2011 (Rel. 111, Created)
DT   21-DEC-2011 (Rel. 111, Last updated, Version 1)
XX
DE   Tomato leaf curl Sinaloa virus isolate 07-3223 coat protein (AV1) gene,
DE   partial cds; replication enhancer protein (AC3) and transcriptional
DE   activator protein (AC2) genes, complete cds; and replication associated
DE   protein (AC1) gene, partial cds.
XX
KW   .
XX
OS   Tomato leaf curl Sinaloa virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-1169
RA   Castro R., Hammond R., Rojas M., Gilbertson R., Hernandez E., Mora F.,
RA   Ramirez P.;
RT   "Distribution and incidence of viruses transmitted by whiteflies
RT   (Hemiptera: Aleyrodidae) in vegetables of economic importance, Cartago,
RT   Costa Rica";
RL   Unpublished.
XX
RN   [2]
RP   1-1169
RA   Castro R.;
RT   ;
RL   Submitted (28-JUL-2011) to the INSDC.
RL   Centro de Investigacion en Biologia Celular y Molecular, Universidad de
RL   Costa Rica, Ciudad de la investigacion, San Pedro de Montes de Oca, San
RL   Jose 11501-2060, Costa Rica
XX
DR   MD5; b4a98266561046f47ec95fb0529245e3.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1169
FT                   /organism="Tomato leaf curl Sinaloa virus"
FT                   /host="Solanum lycopersicum"
FT                   /isolate="07-3223"
FT                   /mol_type="genomic DNA"
FT                   /country="Costa Rica:Cartago Province"
FT                   /collection_date="2007"
FT                   /PCR_primers="fwd_name: pav1v722, fwd_seq:
FT                   atatctgcagggnaarathtggatgga, rev_name: pac1c1960, rev_seq:
FT                   tggactgcagacnggnaaracnatgtgggc"
FT                   /db_xref="taxon:71186"
FT   gene            <1..383
FT                   /gene="AV1"
FT   CDS             <1..383
FT                   /codon_start=3
FT                   /gene="AV1"
FT                   /product="coat protein"
FT                   /db_xref="GOA:G9HWP3"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:G9HWP3"
FT                   /protein_id="AEW22960.1"
FT                   /translation="CANSVMFWLVRDRRPYGIPMDFGQVFNMFDNEPSTATIKNDLRDR
FT                   FQVMHRFYSKVTGGQYASNEQAIVRRFWKVNNHVVYNHQEAGKYDNHTENALLLYMACT
FT                   HASNPVYATLKIRIYFYDSIAN"
FT   gene            complement(380..778)
FT                   /gene="AC3"
FT   CDS             complement(380..778)
FT                   /codon_start=1
FT                   /gene="AC3"
FT                   /product="replication enhancer protein"
FT                   /db_xref="GOA:Q5TJJ6"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:Q5TJJ6"
FT                   /protein_id="AEW22963.1"
FT                   /translation="MDSRTGALITAPQAENGVYIWEIENPLYFKMYREEDIVYTRTRVY
FT                   HVQIRFNHNLRRVLHLHKAYLNFQIWTTLITASGSNYLARFRHLVNMYLDQLGVISINN
FT                   VIRAVRFATDRSYVNYVLEDHSIKIKLY"
FT   gene            complement(525..914)
FT                   /gene="AC2"
FT   CDS             complement(525..914)
FT                   /codon_start=1
FT                   /gene="AC2"
FT                   /product="transcriptional activator protein"
FT                   /db_xref="GOA:G9HWP5"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:G9HWP5"
FT                   /protein_id="AEW22962.1"
FT                   /translation="MQLSSPSNPPSIKRAHRQAKKRSIRRRRIDLECGCTIYLHIDCTG
FT                   HGFTHRGAHHCTSSREWRLYLGDRKSPLFQDVPRRGHSVHEDQGIPCTDTVQPQPEESV
FT                   ASPQSIPELPNLDDIDNSFWVELFS"
FT   gene            complement(841..>1169)
FT                   /gene="AC1"
FT   CDS             complement(841..>1169)
FT                   /codon_start=3
FT                   /gene="AC1"
FT                   /product="replication associated protein"
FT                   /db_xref="UniProtKB/TrEMBL:G9HWP6"
FT                   /protein_id="AEW22961.1"
FT                   /translation="HRVFSNEVEYNVIDDVTPQYLKLKHWKELLGAQKDWQSNCKYGKP
FT                   VQIKGGIPSIVLCNPGEGASYKDYLNKEENTSLKNSTLKNATFVTLQSALYQESTQAGQ
FT                   EEEH"
XX
SQ   Sequence 1169 BP; 293 A; 240 C; 258 G; 378 T; 0 other;
     gctgcgcgaa cagtgttatg ttttggttgg tcagggaccg taggccttat ggtattccta        60
     tggatttcgg acaagtgttt aacatgttcg ataacgaacc cagtaccgcg acgatcaaga       120
     acgatcttag agatcggttt caggtcatgc acaggtttta ttctaaggtt acaggtggac       180
     agtatgctag caatgagcaa gctatagtta ggcgtttttg gaaggtcaac aatcatgtgg       240
     tctacaatca tcaagaggca ggaaaatatg acaaccatac tgagaacgcc ctgttattgt       300
     atatggcatg tactcatgct tctaaccccg tgtatgcaac attgaaaatt cggatctatt       360
     tttatgattc gattgctaat taataaagtt ttatttttat tgaatgatct tcaagtacat       420
     aatttacata tgatctgtct gttgcaaaac gaacagctct gattacattg tttatcgaaa       480
     tcacacctaa ctgatctaaa tacatattaa ctaaatgtct aaacctagct aaataattcg       540
     acccagaagc tgttatcaat gtcgtccaga tttggaagtt caggtatgct ttgtggagat       600
     gcaacactct cctcaggttg tggttgaacc gtatctgtac atggtatacc ctggtcctcg       660
     tgtacactat gtcctcttct cggtacatct tgaaatagag gggattttct atctcccaga       720
     tataaacgcc attctctgct tgaggtgcag tgatgagcgc cccggtgcgt gaatccatgt       780
     cccgtgcagt ctatgtggag gtagatggtg cacccgcact ctagatcaat ccgccttctt       840
     ctaatgctcc tcttcttggc ctgcctgtgt gctctcttga tagagggcgg attggagggt       900
     gacgaaagtt gcattcttga gtgtcgagtt tttgagtgat gtgttttctt ctttgtttag       960
     gtaatcttta tagctggcac cctcaccagg attgcaaagc acgattgatg ggatcccacc      1020
     tttaatttga actggcttgc catacttgca atttgactgc cagtctttct gggcccccag      1080
     aagttctttc cagtgcttta gctttagata ttgcggtgtg acgtcgtcaa tgacgttata      1140
     ttccacttca ttagagaaca ctctgtgat                                        1169
//