ID   JN408719; SV 1; linear; genomic DNA; STD; VRL; 1074 BP.
XX
AC   JN408719;
XX
DT   21-DEC-2011 (Rel. 111, Created)
DT   21-DEC-2011 (Rel. 111, Last updated, Version 1)
XX
DE   Squash yellow mild mottle virus isolate 07-3142 coat protein (AV1) gene,
DE   partial cds; replication enhancer protein (AC3) and transcriptional
DE   activator protein (AC2) genes, complete cds; and replication associated
DE   protein (AC1) gene, partial cds.
XX
KW   .
XX
OS   Squash yellow mild mottle virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-1074
RA   Castro R., Hammond R., Rojas M., Gilbertson R., Hernandez E., Mora F.,
RA   Ramirez P.;
RT   "Distribution and incidence of viruses transmitted by whiteflies
RT   (Hemiptera: Aleyrodidae) in vegetables of economic importance, Cartago,
RT   Costa Rica";
RL   Unpublished.
XX
RN   [2]
RP   1-1074
RA   Castro R.;
RT   ;
RL   Submitted (28-JUL-2011) to the INSDC.
RL   Centro de Investigacion en Biologia Celular y Molecular, Universidad de
RL   Costa Rica, Ciudad de la investigacion, San Pedro de Montes de Oca, San
RL   Jose 11501-2060, Costa Rica
XX
DR   MD5; db1a10507427dfcaad3527f781b0f077.
DR   EuropePMC; PMC4174809; 25288955.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1074
FT                   /organism="Squash yellow mild mottle virus"
FT                   /host="Cucurbita moschata"
FT                   /isolate="07-3142"
FT                   /mol_type="genomic DNA"
FT                   /country="Costa Rica:Cartago Province"
FT                   /collection_date="2007"
FT                   /PCR_primers="fwd_name: pav1v722, fwd_seq:
FT                   atatctgcagggnaarathtggatgga, rev_name: pac1c1960, rev_seq:
FT                   tggactgcagacnggnaaracnatgtgggc"
FT                   /db_xref="taxon:1051966"
FT   gene            <1..337
FT                   /gene="AV1"
FT   CDS             <1..337
FT                   /codon_start=2
FT                   /gene="AV1"
FT                   /product="coat protein"
FT                   /db_xref="GOA:G9HWN9"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:G9HWN9"
FT                   /protein_id="AEW22956.1"
FT                   /translation="YGIPMDFGQVFNMFDNEPSTATIKNDLRDRFQVLHRFYAKVTGGQ
FT                   YASNEQALVRRFWKVNNHVVYNHQEAGKYDNHTENALLLYMACTHASNPVYATLKIRIY
FT                   FYDSITN"
FT   gene            complement(334..738)
FT                   /gene="AC3"
FT   CDS             complement(334..738)
FT                   /codon_start=1
FT                   /gene="AC3"
FT                   /product="replication enhancer protein"
FT                   /db_xref="GOA:G9HWP0"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:G9HWP0"
FT                   /protein_id="AEW22959.1"
FT                   /translation="MVMDLRTWEDITVYQAENSVFIWEVPNSLYFKIYNVEDPIYTHTR
FT                   IYHIQIRFNHNLRRALNLHKAYLNFQVWTESIRASGTTYLNRFRHLVMLYLDRLSVVGL
FT                   NNVIRAVSWATDRSYVTGVIEDHKIKFNVY"
FT   gene            complement(479..874)
FT                   /gene="AC2"
FT   CDS             complement(479..874)
FT                   /codon_start=1
FT                   /gene="AC2"
FT                   /product="transcriptional activator protein"
FT                   /db_xref="GOA:G9HWP1"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:G9HWP1"
FT                   /protein_id="AEW22958.1"
FT                   /translation="MPNSYSSTAPSMKAQHKIAKTRAIRRRRIDLNCGCSIFLHLSCQK
FT                   NGNGFTHLGRHHCVSGGEFRFYLGSSKFPLFQDIQRGGSNLYAHQNIPHTNPVQPQPEE
FT                   STKSSQSVPKFPSMDGIDSSFWDDLFK"
FT   gene            complement(816..>1074)
FT                   /gene="AC1"
FT   CDS             complement(816..>1074)
FT                   /codon_start=2
FT                   /gene="AC1"
FT                   /product="replication associated protein"
FT                   /db_xref="UniProtKB/TrEMBL:G9HWP2"
FT                   /protein_id="AEW22957.1"
FT                   /translation="HYLKLKHWKELIGAQRDWQSNCKYGKPVQIKGGIPSIVLCNPGEG
FT                   ASYKDFLDKAENAALREWTLKNAKFIFLNCPLYESTTQDR"
XX
SQ   Sequence 1074 BP; 292 A; 228 C; 225 G; 329 T; 0 other;
     atatggaatt cctatggatt tcggccaagt attcaacatg ttcgacaacg agcctagtac        60
     tgccactatc aagaacgatc tccgcgaccg tttccaagta cttcaccggt tctatgcgaa       120
     agttaccggt ggacaatacg ctagcaacga acaagcattg gtacggcgct tttggaaggt       180
     gaacaaccat gttgtttata accaccaaga agcagggaag tatgataacc ataccgagaa       240
     cgcgttgtta ttgtatatgg catgtactca tgcctctaac cctgtgtatg cgacattgaa       300
     gattcggatc tatttttatg attcgataac caattaataa acattgaact ttattttatg       360
     atcttcaatg acaccagtta catatgatcg atctgtcgcc cacgaaacag ctcgtatgac       420
     gttatttaga ccaacaacgc ttaatctatc taaatacaac ataactaaat gcctaaatct       480
     atttaaataa gtcgtcccag aagctcgaat cgattccgtc catacttgga aatttaggta       540
     cgctttgtga agatttagtg ctctcctcag gttgtggttg aaccggattt gtatgtggta       600
     tattctggtg tgcgtataga ttggatcctc cacgttgtat atcttgaaat agagggaatt       660
     tggaacttcc cagataaaaa cggaattctc cgcctgatac acagtgatgt cttcccaagt       720
     gcgtaaatcc attaccattc ttttgacaac tgagatggag gaatatggaa cagccgcagt       780
     tcaagtcgat gcgtcgtcga cggatagctc ttgttttagc gatcttgtgt tgtgctttca       840
     tagagggggc agttgaggaa tatgaatttg gcatttttga gtgtccactc tctaagtgct       900
     gcattttcag ctttgtcgag gaaatcttta tagctggccc cctctccagg attgcacagc       960
     acgattgatg ggataccgcc tttaatttga accggctttc catatttaca gttggactgc      1020
     cagtccctct gggccccgat caattctttc cagtgcttta gctttaaata atgt            1074
//