ID   JN408718; SV 1; linear; genomic DNA; STD; VRL; 1167 BP.
XX
AC   JN408718;
XX
DT   21-DEC-2011 (Rel. 111, Created)
DT   21-DEC-2011 (Rel. 111, Last updated, Version 1)
XX
DE   Tomato leaf curl Sinaloa virus isolate 07-3254 coat protein (AV1) gene,
DE   partial cds; replication enhancer protein (AC3) and transcriptional
DE   activator protein (AC2) genes, complete cds; and replication associated
DE   protein (AC1) gene, partial cds.
XX
KW   .
XX
OS   Tomato leaf curl Sinaloa virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-1167
RA   Castro R., Hammond R., Rojas M., Gilbertson R., Hernandez E., Mora F.,
RA   Ramirez P.;
RT   "Distribution and incidence of viruses transmitted by whiteflies
RT   (Hemiptera: Aleyrodidae) in vegetables of economic importance, Cartago,
RT   Costa Rica";
RL   Unpublished.
XX
RN   [2]
RP   1-1167
RA   Castro R.;
RT   ;
RL   Submitted (28-JUL-2011) to the INSDC.
RL   Centro de Investigacion en Biologia Celular y Molecular, Universidad de
RL   Costa Rica, Ciudad de la investigacion, San Pedro de Montes de Oca, San
RL   Jose 11501-2060, Costa Rica
XX
DR   MD5; b2c590900811905ca7f04cf12f591717.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1167
FT                   /organism="Tomato leaf curl Sinaloa virus"
FT                   /host="Solanum lycopersicum"
FT                   /isolate="07-3254"
FT                   /mol_type="genomic DNA"
FT                   /country="Costa Rica:Cartago Province"
FT                   /collection_date="2007"
FT                   /PCR_primers="fwd_name: pav1v722, fwd_seq:
FT                   atatctgcagggnaarathtggatgga, rev_name: pac1c1960, rev_seq:
FT                   tggactgcagacnggnaaracnatgtgggc"
FT                   /db_xref="taxon:71186"
FT   gene            <1..373
FT                   /gene="AV1"
FT   CDS             <1..373
FT                   /codon_start=2
FT                   /gene="AV1"
FT                   /product="coat protein"
FT                   /db_xref="GOA:G9HWN5"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:G9HWN5"
FT                   /protein_id="AEW22952.1"
FT                   /translation="SVMFWLVRDRRPYGIPMDFGQVFNMFDNEPSTATIKNDLRDRFQV
FT                   MHRFYSKVTGGQYASNEQAIVRRFWKVNNHVVYNHQEAGKYDNHTENALLLYMACTHAS
FT                   NPVYATLKIRIYFYDSIAN"
FT   gene            complement(370..768)
FT                   /gene="AC3"
FT   CDS             complement(370..768)
FT                   /codon_start=1
FT                   /gene="AC3"
FT                   /product="replication enhancer protein"
FT                   /db_xref="GOA:Q5TJJ6"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:Q5TJJ6"
FT                   /protein_id="AEW22954.1"
FT                   /translation="MDSRTGALITAPQAENGVYIWEIENPLYFKMYREEDIVYTRTRVY
FT                   HVQIRFNHNLRRVLHLHKAYLNFQIWTTLITASGSNYLARFRHLVNMYLDQLGVISINN
FT                   VIRAVRFATDRSYVNYVLEDHSIKIKLY"
FT   gene            complement(515..904)
FT                   /gene="AC2"
FT   CDS             complement(515..904)
FT                   /codon_start=1
FT                   /gene="AC2"
FT                   /product="transcriptional activator protein"
FT                   /db_xref="GOA:G9HWN7"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:G9HWN7"
FT                   /protein_id="AEW22953.1"
FT                   /translation="MQYSSPSNPPSIKTAHRQAKKRSIRRRRIDLECGCTIYLHIDCTG
FT                   HGFTHRGAHHCTSSREWRLYLGDRKSPLFQDVPRRGHSVHEDQGIPCTNTVQPQPEESV
FT                   ASPQSIPELPNLDDIDNSFWVELFS"
FT   gene            complement(831..>1167)
FT                   /gene="AC1"
FT   CDS             complement(831..>1167)
FT                   /codon_start=2
FT                   /gene="AC1"
FT                   /product="replication associated protein"
FT                   /db_xref="UniProtKB/TrEMBL:G9HWN8"
FT                   /protein_id="AEW22955.1"
FT                   /translation="DFNSRVFSNEVEYNVIDDVTPQYLKLKHWKELLGAQKDWQSNCKY
FT                   GKPVQIKGGIPSIVLCNPGEGASYKDYLNKEENTSLKNWTLKNAIFVTLQSALYQDSTQ
FT                   AGQEEEH"
XX
SQ   Sequence 1167 BP; 295 A; 239 C; 255 G; 378 T; 0 other;
     cagtgttatg ttttggttgg tcagggaccg taggccttat ggtattccta tggatttcgg        60
     acaagtgttt aacatgttcg ataacgaacc cagtaccgcg acgatcaaga acgatcttag       120
     agatcggttt caggtcatgc acaggtttta ttctaaggtt acaggtggac agtatgctag       180
     caatgagcaa gctatagtga ggcgtttttg gaaggtcaac aatcatgtgg tctacaatca       240
     tcaagaggca ggaaaatatg acaaccatac tgagaacgcc ctgttattgt atatggcatg       300
     tactcatgct tctaaccccg tgtatgcaac attgaaaatt cggatctatt tttatgattc       360
     gattgctaat taataaagtt ttatttttat tgaatgatct tcaagtacat aatttacata       420
     tgatctgtct gttgcaaaac gaacagctct gattacattg tttatcgaaa tcacacctaa       480
     ctgatctaaa tacatattaa ctaaatgtct aaacctagct aaataattcg acccagaagc       540
     tgttatcaat gtcgtccaga tttggaagtt caggtatgct ttgtggagat gcaacactct       600
     cctcaggttg tggttgaacc gtatttgtac atggtatacc ctggtcctcg tgtacactat       660
     gtcctcttct cggtacatct tgaaatagag gggattttct atctcccaga tataaacgcc       720
     attctctgct tgaggtgcag tgatgagcgc cccggtgcgt gaatccatgt cccgtgcagt       780
     ctatgtggag gtagatggtg cacccgcatt ctagatcaat ccgccttctt ctaatgctcc       840
     tcttcttggc ctgcctgtgt gctgtcttga tagagggcgg attggagggt gacgaatatt       900
     gcattcttga gtgtccaatt tttgagtgat gtgttttctt ctttgtttag gtaatcttta       960
     tagctggcac cctcaccagg attgcaaagc acgattgatg ggatcccacc tttaatttga      1020
     actggcttgc catacttgca atttgactgc cagtccttct gggcccccag aagttctttc      1080
     cagtgcttta gctttagata ttgcggtgtg acgtcgtcaa tgacgttata ctccacttca      1140
     ttagagaaca ctctggaatt gaagtcc                                          1167
//