ID JN391187; SV 1; linear; genomic RNA; STD; VRL; 7611 BP. XX AC JN391187; XX DT 25-MAR-2012 (Rel. 112, Created) DT 05-JUN-2012 (Rel. 113, Last updated, Version 2) XX DE Tianjin totivirus, complete genome. XX KW . XX OS Tianjin totivirus OC Viruses; Riboviria; Totiviridae. XX RN [1] RP 1-7611 RX PUBMED; 22421961. RA Yang X., Zhang Y., Ge X., Yuan J., Shi Z.; RT "A novel totivirus-like virus isolated from bat guano"; RL Arch. Virol. 157(6):1093-1099(2012). XX RN [2] RP 1-7611 RA Yang X., Zhang Y., Shi Z.; RT ; RL Submitted (25-JUL-2011) to the INSDC. RL Wuhan Institute of Virology, Chinese Academy of Sciences, 44# Xiao Hong RL Shan, Wuhan, Hubei 430071, China XX DR MD5; 93c2cf67ea1494b885a40c9211b547da. XX FH Key Location/Qualifiers FH FT source 1..7611 FT /organism="Tianjin totivirus" FT /host="bat" FT /isolate="Tianjin" FT /mol_type="genomic RNA" FT /country="China" FT /isolation_source="feces" FT /collection_date="2007" FT /db_xref="taxon:1163537" FT 5'UTR 1..6 FT CDS 7..5064 FT /codon_start=1 FT /product="capsid protein" FT /note="structural protein" FT /db_xref="GOA:H8ZPW9" FT /db_xref="InterPro:IPR014720" FT /db_xref="UniProtKB/TrEMBL:H8ZPW9" FT /protein_id="AFE02919.1" FT /translation="MPGYSANYREGPVIVPSGDQVVTSPTSHGRSKGVSSELLTVGGQT FT YKAIASNEVVKSGQAKGEQKFFDENAKIVLLGTFPFKKDLTEEGVEPNPGPVVSDPYAN FT TIYGPLPMHKEAAINLGEQPSAPVKQRPKRHAVVDRVYKTLTLKNGILVTKVVIAGVAT FT YIVYKVGSEVWSWYAAITKPLLGVQTAVKEEYHTLQHKYDYQWYDYFCPMCLLSKYISN FT SGVNGTDAEHHNHVMHALNGNIDCDSSVFGNNFNITTSPQTLTMSGSLTPGKYQTTLTV FT QALIGGTGVVVGTVTFAGKTVAYQVFDDSFASFDLGTVTVSASTTPSVIWTGSTGATLT FT MAVNIICRPITPTTVAISGQPIWTTPYAPAQAVMTVPAVAKALKNTQRAADLSTRNKTR FT HGSNNAISVLNQLATQIDVEDQRLPIYKIEGEREGTHEPSFSCQLTFRGMTKSAFGKRT FT KHEAKTAAASLILEELTRKSNSTWPADAKLTLSGWVRDLTQEGVEPNPGPIANEDGAEC FT WDPEELKMLQAMMAREQQKVLPKMIDDPKLVLDLDEMQQLAPQESCNKTASVEEYQEHV FT RHMSNYSGAVGEAFAVVRWYLLNETTNRFAPLVVMDDSMDEPTVTPVDVSPAKRPSGAA FT RRSDKEEEKPKKPPKKEEIVPAPQPPKTQEQLDEERKFAMQRIADRIKSDPIKLLTWIK FT RPTSTKFKREVLSLAFDIPHINSKPSLDQYETIVYCYFNDIPDDELTIMLLQYDRKWTS FT LSTDCKLSILSACNVRASLEAAKAHNKLMHAYNGNPISADFSEVENAPSFLSLAENTDE FT VLKPYTGLEIQTIITNIVGDANPNQSRIFDQDRLRGNQYSAGGLVTQNAISAIPFTNLI FT PRTIRVGNILVNSANRLQITETNVSEYYSNPIIATKLSEMISDQVKNNQFSTWRRDNTS FT LQGFNAFDIATINTAILPNGLSLESMLLKLSLLHSIKAMNVDAASINRSQYQVIDHNTV FT PTIGAPAVVGVNNSPVFGEDCGGNNPVYPFGGGTGAIAFHVTLQTVPDERKSYAIFVPP FT AILQATSDANEALALFALSMSEWPHALYTVTKQTTDLAGANAGQQVFIPTQSTIHIGGR FT RVLDLIIPRREIAPNPTTLVAANAMCMVRPQAGPDATAGAIPLAAGQLFNMNFIGAPAF FT EEWPLTSYLYSWAGRFDITTIRQYMGRLATMVGVKDAYWAAHELNVALSQVAPKMTTAA FT GGWAAQAANSAQQSDVCYSSLLTVTRSAANFPLANQPAADMRVYDTDPATWNKVALGLA FT TAANLVPEQSMDVPFVVGDARASFWERLQAIPMCIAWTMYYHSRGITTLAWDNAYTDNT FT NKWLQKMVRNTFSTTQSVGTIIPARYGKIVCNLYKNMFHRAPAYVATSVGGKELHITHF FT ERWLPGGTYANVYSGAGAVVNCFSPVLIPDIWCQYFTAKLPLFAGAFPPAQGQNSTKGF FT NSKQGLMIHRNQNNNLVAPYIEKFADNSSYFPVGQGPEINDMATWNGRLWMTTGNVQYL FT DYSGAAIVEAVPPAGELPVGKQIPLLAGENAPIELTNAATTCVPRYSNDGRRIFTYLTT FT AQSVIPVQACNRAANLARSCWLLSNVYAEPALQALGDEVEDAFDTLTNSSFLDVAKSVA FT ESAGEVPATKALTDLQAVDVSSLPSTSDPSNVLSQPAPLMSPPTSSS" FT CDS 5319..7535 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="nonstructural protein" FT /db_xref="GOA:H8ZPX0" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:H8ZPX0" FT /protein_id="AFE02920.1" FT /translation="MNQHLCHLDQTILANLCIWTQLWGLRHLVTLHSLGMLNDIDTYAT FT KMAKVSSFAKRFPFETDNAKQRWCEVNTLTGYMQNDIGTFDYDKEFESLATGGNEHPEW FT WKRKFEEKVRDLMTFQEAPEFVSFETYVKDGYWLTSGSSSIGKVEWSYDGDTGKFKARK FT NMLVDLYTKEEIYQMAIEWDGELMNRVFIKDELAKRRLAVASNIEAYLNQAYLLYLFGH FT GFKNYKYITLDEKPNETHKRNCRLIKLLKEGSYALPFDFKGFDRQPTTDEIKTIIKRVI FT DLVSPRVPASHRRLFNTIAFKNIVCYDKNYLYSPLTKRTVKQTGGLPSGIRPTSLIGNL FT WNMIATDIARDVTKDILGQDYIQEIALKGDDTYIVAPNFFVCLVFRYAYQSINAVGENS FT KFGIMQNACEFLRTEISSSGVRGWTNRAIPSVTQRKPWNPEPWTENQQVQTIANNIYLL FT ERRCKQDCTFLHMANKIKWSKMMHQSYLWLHLPKHHGGFGIYEWSGWLPNCKLPLTQPP FT VFDVANLNPSSVDLSWYSLSDSEKRAYQKVEFSSKIAANDIPGPAKHVMRSYIVALRAC FT KPEWSKTLVNFKPIPLISGPTYTNPFWPHPRIKTDTTSNTNGYPQLSEFVRQHQIAKRA FT KIPVPPLRDMIAKHYPSAYKVMNRCELQGWHRTDSINIACGKIPTEPLKILNPILAAWV FT QQIVLNAGLLKWSGRKNIANRLYAATTLAVHHIQCEGGASMYAF" FT 3'UTR 7536..7611 XX SQ Sequence 7611 BP; 2062 A; 1968 C; 1766 G; 1815 T; 0 other; gtaattatgc caggttacag tgcaaattac cgggaagggc ccgtaatcgt ccctagtggt 60 gatcaggtgg taaccagccc aaccagccac ggccgaagca agggagtgtc aagcgagctc 120 ctgactgtag gcggtcaaac ctacaaagca atcgctagca acgaagtcgt taagagcggc 180 caagctaagg gagagcaaaa attcttcgat gaaaatgcca agatcgtgtt gttgggtacc 240 ttcccgttca agaaggacct tactgaggaa ggagtagagc ctaacccagg tcccgtcgtt 300 tccgacccgt acgcgaatac tatctacggg cccctaccca tgcacaagga agcagccatc 360 aaccttggtg aacaaccatc tgcgcctgtc aaacaaaggc ccaagcgtca cgctgtcgtg 420 gaccgggtgt acaaaactct cactctgaag aatggcattc tggtcaccaa ggtcgttatc 480 gctggagtgg ccacgtatat tgtgtataag gttgggtcgg aagtctggtc gtggtacgcg 540 gctataacca agcccttgct gggtgttcag actgctgtca aggaagaata ccataccttg 600 caacacaagt acgactatca atggtacgat tacttctgcc caatgtgtct gctatccaag 660 tacatctcga actcaggagt gaacggtacc gacgcggagc atcacaatca cgtcatgcat 720 gcgctgaatg gtaacatcga ctgcgactcg tcagtatttg gaaacaactt caacatcacg 780 acgtcaccac aaactctgac aatgagcggt tccttgactc cgggcaaata tcagaccacg 840 ttgacagtac aggctttgat tggcggaaca ggtgtcgttg tgggcacagt cactttcgct 900 ggcaaaacgg tcgcatacca agtgtttgac gattcttttg cttcgtttga ccttggaaca 960 gtgactgtct ctgcttctac taccccgtcg gtaatatgga ccggatcaac aggggctact 1020 ttgactatgg ctgtcaacat catttgcagg ccaataactc caacgaccgt agccatctct 1080 ggacagccaa tttggacgac tccttacgca ccagctcagg ctgtcatgac cgttccggcg 1140 gtagccaaag cgctcaaaaa cacgcaaaga gccgctgact tatcgactag gaacaagacg 1200 agacacggtt cgaacaacgc catttcagtc ttgaatcagt tggccaccca gatcgacgtc 1260 gaagatcagc gcttgccaat ttataagatc gaaggagaga gggaaggtac tcatgagcct 1320 agcttctctt gtcagctgac attccgcggc atgactaaga gtgcgtttgg caagcgaaca 1380 aaacatgagg ctaagacagc agccgcatcc ttgatcttgg aggaactgac caggaaatca 1440 aactccacgt ggccggcgga cgcaaagctt acgttgtctg gatgggttag ggacctgact 1500 caagaaggag tcgaaccgaa tcctggcccg atcgccaacg aggatggagc cgaatgctgg 1560 gacccagaag agctgaagat gctgcaggct atgatggcta gagaacagca aaaagtattg 1620 cctaagatga tcgacgaccc gaagctcgtt ttagacttgg acgaaatgca acaactagct 1680 cctcaagaga gctgcaacaa gaccgccagt gttgaggagt atcaggaaca cgtcagacat 1740 atgagtaact attccggcgc cgttggcgag gcattcgctg tcgtgcgttg gtacttgctg 1800 aatgagacga ctaaccggtt cgctccgctc gtggttatgg atgattctat ggatgagccg 1860 actgtcacgc cagtagatgt cagtccagca aagcgcccga gtggcgctgc tcggaggtcg 1920 gacaaggaag aggaaaaacc gaaaaagcca cccaagaagg aagagatcgt tcccgccccc 1980 cagccgccta aaacgcaaga acagcttgat gaagagcgca aatttgctat gcaacgtata 2040 gctgatcgca tcaagtccga cccaatcaag cttttgacct ggatcaagag acccacgtcc 2100 acgaagttca aacgtgaggt gttgtctctt gctttcgata tccctcacat caactcgaaa 2160 ccaagccttg atcaatacga aaccattgtt tactgttatt ttaacgacat accagatgac 2220 gaactcacga ttatgctctt gcaatatgac aggaaatgga catctctatc taccgattgc 2280 aaactttcta ttctctcagc ttgtaatgtt cgagcttcgc tggaagcagc gaaagcgcat 2340 aataagctga tgcatgcgta caatggcaac cccatttccg cagatttttc tgaagtagag 2400 aacgctccct ctttcctttc cctcgccgag aacaccgacg aggtgctcaa gccttacacg 2460 gggcttgaga ttcaaacgat cattacaaac attgtcggtg atgctaatcc gaatcagtcc 2520 agaatttttg accaggatag actgcgcggt aaccagtatt ctgctggtgg cctggtcact 2580 caaaatgcta tatctgcaat tccattcacc aacctaatac ctaggacaat ccgagtaggc 2640 aacattctgg tcaactcggc taatagactc cagatcaccg aaaccaacgt cagcgaatac 2700 tactctaatc ctattatcgc gactaaactt tctgaaatga tcagcgatca agtcaaaaac 2760 aatcaattct cgacatggcg tcgtgacaac acgtcactgc aaggtttcaa cgcattcgac 2820 attgctacca tcaacacggc catcttgccg aacgggttat cgctagaaag catgttgctc 2880 aagctgtcct tgctccactc gatcaaggct atgaacgtcg acgccgccag tatcaaccga 2940 tcacaatatc aagtcatcga ccataacaca gtacccacaa ttggtgcgcc tgctgtagtg 3000 ggcgtgaaca actctcccgt gtttggcgaa gattgcggcg gcaacaaccc tgtttatcct 3060 tttggtggag gaaccggcgc tatcgcgttc cacgtcacct tgcaaactgt gcccgacgag 3120 cgcaagtcat acgctatctt tgttccgccg gctatattgc aggccacttc cgatgctaac 3180 gaggcattgg ccttgttcgc cttgtcgatg agcgaatggc cacacgcact ctacacagtt 3240 accaaacaaa cgaccgatct tgctggcgcc aatgctggcc agcaggtgtt catcccgaca 3300 cagagcacta ttcacattgg tggtcggcga gttctcgatt tgatcattcc gcgtcgagag 3360 atagcgccaa atccaactac cttggttgcc gcgaacgcta tgtgcatggt caggcctcaa 3420 gccggaccag atgccacagc tggagctatt cccttggcag caggacagct attcaacatg 3480 aacttcatcg gtgccccggc atttgaagag tggcctttga catcttattt gtactcctgg 3540 gctggtcggt tcgatattac cacgatccgt cagtacatgg gcaggctagc gacgatggtt 3600 ggagtgaagg acgcatactg ggctgctcat gaactaaatg ttgctttaag tcaggtggcc 3660 cccaaaatga ctacagcagc cggaggctgg gctgctcaag cagctaattc tgcacaacag 3720 agtgatgtgt gttattccag tttgttgacc gtgacacgat ctgctgctaa cttcccactt 3780 gccaaccaac cagctgccga catgcgtgtg tatgacactg acccagctac gtggaacaag 3840 gtagccctcg gtctggctac ggcagccaat ctggtacccg aacagtccat ggacgtgcct 3900 tttgttgtcg gtgatgctag agcatccttt tgggaacgtc ttcaagccat accaatgtgc 3960 attgcctgga caatgtacta tcattcgcgc ggtatcacca ctctggcttg ggacaacgcc 4020 tacactgaca acacaaataa atggctgcag aaaatggtgc gcaacacgtt ctccacgacc 4080 cagtcagtcg gaactataat tcctgcacgc tacgggaaga ttgtctgcaa cttgtacaag 4140 aatatgttcc accgtgcccc agcgtatgtg gctacaagcg ttggtggcaa ggagttgcac 4200 atcacgcact tcgaaaggtg gttgcccgga ggcacatacg cgaacgttta ttccggtgcg 4260 ggcgctgttg tcaattgttt ttctcctgtt ttgataccgg acatttggtg tcagtacttc 4320 acagctaaat tgcctctctt cgctggcgct ttcccacccg ctcaaggtca gaactccacg 4380 aagggtttca attctaagca ggggttgatg atccatcgca accaaaataa caacctcgtg 4440 gcaccataca ttgagaagtt tgctgacaac agcagctact tccccgttgg ccaagggcct 4500 gaaatcaatg acatggcaac atggaacggt agactttgga tgacgactgg aaacgtgcag 4560 tatcttgatt actccggtgc tgctatcgtc gaagcggtgc cacctgctgg tgagttacca 4620 gtcggcaagc agatcccgct gctggccggc gaaaacgctc ccattgaact gaccaatgct 4680 gctaccacat gtgtaccacg ctattcgaat gacgggcggc gcatcttcac ttatctgacc 4740 acggcccaat ctgttatccc ggttcaagca tgcaatcgag ctgctaacct tgcccgttca 4800 tgttggttgc tttccaatgt atatgcggag ccagcgcttc aagccctggg agacgaagtt 4860 gaggacgcgt ttgacacgtt aacaaattcg tcttttttag atgtggccaa gtcggttgcg 4920 gagagtgctg gggaagttcc ggcgacgaag gcactgaccg acttgcaggc tgtggacgtg 4980 tcaagcttgc cgagtacttc agatccatca aacgttttgt cccaaccagc tcctttgatg 5040 agtccaccta cttccagctc ttgaagtact tacacaatca aacttcatca tcttcacata 5100 acaacatttc ccgccttact gacggcctag ttagatatgg ccatctcacc gatcataaaa 5160 ttttcatctt catttcagaa aatcttgaac cgcaacaacc tatatctacg cctggagaca 5220 ttctgacaac tgagtaccga gtgaaatcag atcttgcagt gacgagattg cgcatcaagg 5280 actttatagc acgcattgac ccagacatca tcaaattcat gaaccaacac ctatgtcatt 5340 tggatcaaac gatattggca aatttgtgca tctggactca attgtggggc cttcgccatt 5400 tggtcacgtt acactctctc ggcatgctca atgacataga cacctacgct actaagatgg 5460 ccaaagtgag ctctttcgct aaacgtttcc ctttcgagac agacaacgcc aagcaacgtt 5520 ggtgtgaggt taacactctc actggctaca tgcagaatga cattggcact ttcgactatg 5580 acaaggagtt cgaatcgctc gccacgggtg gaaacgaaca ccccgagtgg tggaaacgca 5640 aatttgaaga aaaagttcgg gacttaatga cttttcagga ggcgccagag ttcgtaagct 5700 ttgaaacgta tgttaaggat gggtattggc tgacttcggg tagttcaagc attggcaaag 5760 tcgaatggtc ttacgacggt gacaccggca agttcaaagc tcgcaaaaac atgcttgttg 5820 atttgtacac taaggaagaa atctatcaga tggctattga atgggatggc gagctgatga 5880 acagagtttt tatcaaggac gaacttgcta agcgacgcct agctgttgcc agcaacattg 5940 aggcgtatct taatcaggct tacctactgt atctctttgg acacggtttc aaaaattaca 6000 agtacatcac gttagacgag aaaccaaacg agacgcacaa gcggaattgc agactgatca 6060 aattattgaa agaagggagt tatgctttac cattcgattt caaaggattt gaccgacaac 6120 cgaccactga cgagatcaag accataataa agcgggtcat cgaccttgtt tctcctcgtg 6180 ttcctgcttc tcatcggcgc ttatttaaca ctattgcttt caagaacatt gtctgttacg 6240 acaagaacta tctctattcc ccattgacta aacgaacagt gaaacaaacg ggtgggctac 6300 cgtctggaat tagaccaact agtttaatcg gcaacttgtg gaacatgata gcgactgaca 6360 ttgctcgcga cgtcaccaaa gacattctgg gacaggatta catccaagag attgcgctca 6420 aaggtgatga tacgtacatc gtcgcaccta acttctttgt ttgtctggtt ttcaggtatg 6480 catatcaatc catcaatgca gttggagaaa attcaaaatt tggtataatg caaaacgctt 6540 gcgaattcct gcgaaccgaa atctcatcct caggcgttcg cggctggacc aatcgcgcta 6600 ttccttctgt aacacaacga aaaccatgga accctgagcc ttggacagag aatcaacaag 6660 tccagaccat cgccaataac atctatcttc ttgagcgtcg ttgcaaacaa gattgtacat 6720 tccttcacat ggctaacaaa atcaaatgga gcaagatgat gcaccaatcc tatctctggt 6780 tgcatctacc taaacaccac ggtggattcg ggatctacga atggtccggt tggctgccta 6840 attgtaagct accacttaca cagccgccgg tatttgacgt agccaacctc aatccatcgt 6900 cggtcgacct atcttggtat tcgctctctg atagcgaaaa acgtgcttac cagaaggtcg 6960 aattttcatc taaaatagcg gccaacgaca tccccggacc cgctaagcac gtcatgcgtt 7020 cttacattgt ggctcttaga gcttgcaaac ctgagtggag taaaacgctt gtcaacttta 7080 aacccatacc actcatctca gggccaactt acaccaatcc attctggccc catcctcgca 7140 tcaaaactga cacaaccagt aacaccaacg gttatcccca gttgtctgag tttgttcgtc 7200 aacatcaaat tgccaaacga gcaaagatac ctgttccacc actgcgcgac atgatagcaa 7260 aacactatcc gtcagcatac aaagtcatga acaggtgtga attgcaaggc tggcatcgaa 7320 cagactcaat caacatagcg tgtggcaaaa taccaaccga gccactcaaa atcttgaatc 7380 caatattagc agcttgggtt caacagatag ttttgaatgc tggtctcctc aaatggagcg 7440 gtcggaaaaa catcgccaac cgactgtatg ctgctacaac actggcagta caccacatcc 7500 agtgtgaagg gggggcgtca atgtacgctt tttaaagtgg tctggcaacc caccatgctt 7560 agtcttatca acttcttata agccagctgg ctaccccact aagacatggt c 7611 //