ID JN389521; SV 1; linear; genomic RNA; STD; VRL; 6495 BP. XX AC JN389521; XX DT 12-SEP-2011 (Rel. 110, Created) DT 18-MAR-2014 (Rel. 120, Last updated, Version 2) XX DE Tamus red mosaic virus isolate IT, complete genome. XX KW . XX OS Tamus red mosaic virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-6495 RX DOI; 10.1007/s11262-011-0664-y. RX PUBMED; 21881939. RA Menzel W., Winter S.; RT "Sequencing of the Tamus red mosaic virus genome: further evidence that it RT is a distinct species of the genus Potexvirus"; RL Virus Genes 44(1):120-123(2012). XX RN [2] RP 1-6495 RA Menzel W., Winter S.; RT ; RL Submitted (22-JUL-2011) to the INSDC. RL Plant Virus Department, DSMZ-German Collection of Microorganisms and Cell RL Cultures, Inhoffenstrasse 7B, Braunschweig, Lower Saxony 38124, Germany XX DR MD5; 8b691c2015e61b868435c1bdda77a930. XX FH Key Location/Qualifiers FH FT source 1..6495 FT /organism="Tamus red mosaic virus" FT /host="Tamus communis" FT /lab_host="Chenopodium quinoa" FT /isolate="IT" FT /mol_type="genomic RNA" FT /country="Italy" FT /collected_by="P. Caciagli, G. Boccardo, V. Lisa and O. FT Lovisolo" FT /collection_date="1993" FT /db_xref="taxon:1081702" FT /culture_collection="DSM:PV-0397" FT CDS 82..4587 FT /codon_start=1 FT /product="replicase" FT /db_xref="GOA:G3LHV4" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:G3LHV4" FT /protein_id="AEO12140.1" FT /translation="MSRLRGALEQFTDPAQKIVIQNEQYQHLRKTLSHTATTNPYAIAE FT SAANVLEDLGINSNPFATTAHTHSAAKAIENDLYFSASSLLPKENPVSFLFMKPAKLRF FT FHRGPQHNDHFINKVVEPKDVARYDPDTLVSSLPTLSTSHAFMGDSLHFLPFSFLVRLF FT SDNVQLKTLVATMVLPAEAKFNLASIYPNIYTLQYHRCKKGKVTHFSYAPGGHKGAEYV FT HELKQLDWLSVGRLTDGVTTITAQKIETKAANHLFIFQRGSLMTPCLRNFSTETKFVTL FT PLIFLPEKFNARQPIRKTLVMQMFLYVKGVKQVSERDIWAKWRQLIKTEDLQDFSAIEL FT LHLTNYFVFVGKQSSINCFDDVLKGGFLTRWFKPIKNWFEMVRQKIFGEAEFVRLVRAL FT EWTEVDLKLDTKNYDFKRREGNGFLSLSKVAAGPDDSEDVFHLPQEESLFSQMEWLGEF FT WNFIKGENGKKVAEPCPNEPVCETNVDEDQSAHEWLLKLEQTRVVEETPLEQPTEVSTT FT LDATLTMLPDNSQMSEDEKVVAEGAITESEQAPEEKAEELEQVDSSPLQAEVAQIRFGT FT APTKAEVAALIRTAMKQKQISLEPLEATAGCEQEMMEGSSSAAVLEDPPATTSDDTAED FT DSGLTSDEREMKKFADEATQQVIDMSKGEFEKKPWAKWMSILENAGFKGTTCLLDANNY FT LIQPILGVSKLTARAWPRELTPEVDLFDRLKAIHRHPCAYTISNLRARAYASDVKNDRT FT GSFTRSQDLAWKEAFTMICESPRQREVALTVIHGAGGSGKSFALQKYLEDCPDAEVKIV FT LPTNGLRMDWLAKLPKFPLTSVQTFEKALXSQTAKVVIFDDYTKLPNGYIDAYLSLRTT FT VVWAILTGDSRQSSFHEMNEQALINGLTPAADHFSDYARYYLNATHRNKQDLARMLGVY FT SERTGLTTVSMSSRPLKEVHMLVPSLIQKKTYTELGYKTSTYAGCQGITAPKVQVLLNS FT DTTLCTDKVLYTALSRAVHSIHFINTSASSAAFWDKLNATPYLKTFLSTVREQSLASAK FT PREEGPTPVAAPKTHVPVENSNLCLEGAVEKLLEKHDREIFRADHGHSNCVQTDNPTIQ FT LSSHQQAKDQTLLWATIEARLKISTPERNLAEYLMKREVGDVLWLHYKNAMNLPEEPIP FT FEQTLWDTCAEEVQKTYLSKPMHMLKNGELRQSPDFHKNTIALFLKSQWVKKMEKLGAD FT KIKPGQTIASFQQAAVMLYGTMARYMRRMREVFQPTHVFINCEQSPEGMSDWIKNEWNF FT KGNAYANDFTQFDQSQDGAMLQFEILKAKHHSIPEWVLEGYLDIKTNAHVFTGTLGIMR FT LTGEGPTFDANTECNIAYTHLRFNVPKGTAQAYAGDDSVLACIPEERESFKMWKNKLEL FT TAKPEYFPQMQGEWAQFCGFLFTPLGALKEPLKMLAVVELAKQRGELKKNMRSYALDVL FT LNYQHGDALQHVFSEKQLEAHQITVRNLIKFGGSSILENC" FT CDS 4592..5284 FT /codon_start=1 FT /product="tgb1" FT /db_xref="GOA:G3LHV5" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:G3LHV5" FT /protein_id="AEO12141.1" FT /translation="MNSVFELLESEGFERTKEPISKPVVVHAVAGAGKSTLIRKLLERN FT PEIRAFTHGVPDPPSLGCNDIGPFQSNPPSHTINILDEYPAGDVSGAFHVLFADPLQHR FT KPKRRPHFVKRVSHRLGPNTENLLRKVGISITGAGSAEVKTQQSIFEGALFGKITAVDS FT NVGNLLANHGVKFSYPDDVLGLEFPVVTVFSALPVSEICDKEGAYIALSRHTEELHVRA FT PGSFNSTS" FT CDS 5247..5606 FT /codon_start=1 FT /product="tgb2" FT /db_xref="GOA:G3LHV6" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:G3LHV6" FT /protein_id="AEO12142.1" FT /translation="MSGRQVHLTPPVDHSNSVLALVVGVSIALVVFSITRNTSPHVGDN FT IHSLPHGGCYKDGTKSIYYGKPGNSVRQPARGAALVLVIFLPILIYAIHKFESRRTRVS FT ACGHIACPSGGATQH" FT CDS 5518..5712 FT /codon_start=1 FT /product="tgb3" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:G3LHV7" FT /protein_id="AEO12143.1" FT /translation="MPFTSLNLAVLVSALVVTLLVLQVVQRNTDNCIIVITGHHAETNC FT PPSLELAEVLKYLKPHHHG" FT CDS 5775..6440 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:G3LHV8" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:G3LHV8" FT /protein_id="AEO12144.1" FT /translation="MASPPSPANQPKVESNNPFKAPTLDRLKLMTFDVNSTLLPSTEEF FT KLISEDWAKLGISGDSLTENAMKLATFCYHSGSSTTTEMRGESSKPGVSLSRLAGVVNM FT HTSLRKFCRYFAPLIWNIHVESKIPPAAWQSKDFKEGEKFAAFDFFDGVENVGSIKPPG FT GLIRKPTDKERIANATARALKLFEAAAQQNRMASNSVHYTQGRYSDTAPQIQFLPDPE" XX SQ Sequence 6495 BP; 1800 A; 1642 C; 1523 G; 1529 T; 1 other; ggaaaatcaa tcctaaccga acaccctcca atcaaagcat tccaaggttc atcgacgccc 60 tcacgggtaa gataactgac aatgtctcgt ttgagagggg ccctagaaca attcactgat 120 ccagctcaga aaattgtcat ccagaacgaa cagtaccaac atctacgcaa gacgctatca 180 cacactgcca ctacaaatcc ttatgctata gccgaatctg ccgccaatgt gttggaggat 240 ttgggtatca actcaaatcc ttttgcaaca actgcccaca cacactctgc agcaaaagct 300 atagaaaatg atttgtattt ctctgccagc tctttacttc caaaggagaa tcctgtctcc 360 ttcctgttca tgaaacctgc caagctcaga ttctttcaca ggggtccgca acacaatgac 420 cactttatca acaaagttgt ggaaccaaaa gatgtggcca ggtacgatcc cgacacactt 480 gtgtcttcac tgcccaccct tagcacctct catgctttca tgggagattc attgcatttc 540 cttccctttt cttttttagt tagacttttc tcagataatg tacagcttaa aactttagta 600 gccaccatgg tcttgcctgc tgaggcaaaa tttaatttag cttccatata ccctaacata 660 tatactcttc aataccatag atgtaagaaa ggtaaggtca ctcatttctc ttacgcgcca 720 ggaggtcaca agggcgccga atatgtgcac gaattgaaac aattggattg gctttcagta 780 ggacgtctca ctgacggcgt cacgacaatc acagcgcaga agattgaaac taaagcggcc 840 aatcatttgt tcatcttcca gagaggatca ctaatgacac cctgcctccg aaatttctcc 900 acagaaacga agtttgttac tctcccactc atcttccttc ctgaaaaatt caacgctaga 960 cagccaatca ggaaaaccct agtgatgcag atgttcctat atgtgaaggg cgtcaagcag 1020 gtgtctgaga gagacatctg ggctaaatgg cggcaactga ttaaaaccga ggatcttcaa 1080 gatttctccg ccattgaact tctacactta acaaattact ttgtgtttgt tgggaaacag 1140 agttcaatca attgctttga cgacgtgcta aaaggtggct ttctgactag gtggtttaag 1200 ccaataaaga attggtttga gatggtgaga cagaaaatct ttggagaagc tgagttcgtg 1260 cgactggtac gagctttgga atggactgaa gtcgacttga aacttgatac aaagaattac 1320 gacttcaaga gaagagaagg aaatggattc ctgtccttat ctaaggtagc tgcgggccct 1380 gacgactctg aagacgtctt ccacctccct caagaggagt ctctcttctc ccaaatggag 1440 tggctcggtg aattctggaa tttcataaaa ggggagaatg gcaagaaggt tgcggagcct 1500 tgcccgaacg aacccgtctg tgagactaac gtggatgaag accaaagtgc acacgagtgg 1560 ttgctgaaac tcgaacaaac tcgagtggtg gaggagacac ctctcgagca accaacggaa 1620 gtctccacca cgctggacgc gaccctgaca atgctacccg acaattccca gatgagcgag 1680 gacgagaagg tagttgctga gggtgcgatc acagagagcg agcaagcacc tgaagagaag 1740 gcggaggaac ttgaacaagt ggattcttcc ccactccaag cagaggtcgc tcaaattcgt 1800 ttcggcacgg cacccactaa agctgaagtt gctgcactca taagaaccgc gatgaaacag 1860 aaacaaattt cgctggaacc tcttgaagcc accgcggggt gcgagcaaga aatgatggag 1920 ggatcgtcat ctgctgccgt tctggaagac ccacctgcga ccacttcaga tgacacagct 1980 gaagacgact cgggcttgac cagcgatgag agggagatga agaagttcgc cgacgaggcc 2040 actcagcagg tcattgacat gagcaaggga gaatttgaga agaaaccctg ggctaaatgg 2100 atgagcattt tggagaacgc tgggttcaaa gggactactt gtttgctcga cgcgaataat 2160 tacctgatcc agccaattct cggagtctca aagttgacag ctcgcgcctg gccgagagag 2220 ctcactccag aagttgatct gtttgaccgt ctgaaggcaa ttcaccgtca tccttgcgct 2280 tacacgatat caaacctccg cgcgagagca tatgcatcag acgtgaagaa cgacaggact 2340 gggtcattca ccagatcaca agacctcgcg tggaaggaag ccttcacgat gatttgcgag 2400 tcaccgaggc aacgagaagt ggccctcacc gtcattcacg gagcgggggg ttcagggaaa 2460 agcttcgcgt tgcagaaata cttggaagat tgcccggacg ctgaggtcaa gatagtgctg 2520 cccacgaatg gattgagaat ggactggctg gcaaaattgc caaaatttcc actgacgagc 2580 gtccaaacat ttgagaaagc gctgntctcc caaactgcca aggtggttat tttcgatgat 2640 tacacaaagc taccaaatgg gtacattgac gcttaccttt cattgagaac cacagtggtt 2700 tgggcaattc tgactggaga ttcgagacag tcatccttcc acgagatgaa tgagcaagcc 2760 ttaattaacg gtttgacccc agctgctgac cacttcagcg actatgccag atactatctc 2820 aacgccacgc accgaaacaa acaggatctg gcaaggatgc tgggcgtcta ctccgaaaga 2880 acgggcctca caactgtttc catgagctca cgcccgctga aggaagttca tatgctggta 2940 ccctcattaa ttcagaagaa gacctacact gaactagggt acaaaacgtc cacatacgcc 3000 ggctgtcaag gaattactgc cccgaaggtg caagtcctgc tcaattcgga caccaccctg 3060 tgcactgata aggtcctcta cacggcgtta tcacgagcag tgcattccat ccacttcatt 3120 aatacctctg catcatccgc cgctttctgg gacaagttga acgccacacc gtatctcaaa 3180 actttcctga gcacggtacg ggaacaaagt ttggcgtcag caaaaccaag agaggaaggg 3240 cccactccag tcgcggctcc gaagactcac gttcccgtgg agaattcaaa cctttgcctt 3300 gaaggtgctg tagagaagtt gctggaaaag catgacaggg agatattcag agcggatcat 3360 ggccactcga attgcgtgca aactgataac cccacaatcc agctgtccag tcaccaacag 3420 gccaaggatc aaactctgtt gtgggcaaca attgaagctc ggctcaaaat atcaactccc 3480 gagcgaaatt tagccgagta cctgatgaag cgcgaagttg gtgacgtgct ctggctccat 3540 tataagaacg caatgaattt gccggaggag cccatcccat ttgagcagac gctctgggac 3600 acttgtgctg aggaggtgca aaagacttat ctctctaagc cgatgcacat gctgaagaat 3660 ggagaactga ggcagtcccc tgactttcac aagaacacca tcgcgctttt cctgaagtca 3720 caatgggtga agaaaatgga gaaattgggg gcggacaaga taaaaccggg acaaacaatt 3780 gcctccttcc agcaagcagc cgtcatgctt tacggcacta tggcccgata catgcgaagg 3840 atgagggaag tcttccagcc cacacatgtc ttcatcaatt gcgaacaatc ccccgagggc 3900 atgtccgact ggatcaagaa cgagtggaac ttcaaaggaa atgcatacgc caacgatttc 3960 actcagtttg accagtccca agacggcgcc atgcttcaat tcgagatcct aaaggccaag 4020 caccattcca tccctgagtg ggttcttgag ggttacttgg acatcaaaac gaacgcgcac 4080 gtgtttacgg gcactttggg cataatgagg ctcacaggag aggggccgac tttcgacgcg 4140 aacaccgagt gcaacattgc ttacactcac ctgcggttca atgtgccaaa agggacagct 4200 caggcgtatg cgggtgatga ttctgtgtta gcttgtattc cggaagaaag agagtctttc 4260 aagatgtgga agaacaagct tgaactaaca gcaaaacccg agtactttcc tcagatgcaa 4320 ggggagtggg cccaattctg tggtttcctg ttcacacctc ttggggcctt gaaagaaccg 4380 ctgaagatgc tcgcggtcgt ggaactcgct aaacagaggg gtgagttaaa gaagaacatg 4440 aggagctacg cccttgacgt gctgctgaat tatcaacacg gggatgctct tcaacatgtt 4500 ttctcagaga aacaactaga agcccaccaa atcacggtta gaaatttgat taagtttggt 4560 ggttcttcta ttcttgaaaa ctgttagcaa catgaattct gtgttcgaac tgttggagtc 4620 tgaaggattt gagcgcacca aggaaccaat ttcaaagccc gttgtagttc acgctgttgc 4680 tggggccgga aagtccactc tgatacgcaa gctattagaa agaaatccgg agatcagagc 4740 tttcactcac ggagtgccgg accctccttc tcttggttgc aacgacatcg ggcccttcca 4800 gagcaacccc ccttcgcaca ccatcaacat tcttgatgaa tatcctgcgg gggacgtttc 4860 tggagctttc catgtgcttt tcgctgatcc cttgcaacat cggaaaccca agcgccgccc 4920 ccattttgtg aagagggtgt cacaccggct tggaccaaac actgagaatc tgctccggaa 4980 agttggtatc tccataacgg gcgctggatc tgccgaggtt aaaactcaac aatctatttt 5040 cgaaggcgca ctgttcggga aaatcactgc tgttgatagc aacgtaggaa atcttttggc 5100 caatcacggc gtgaagttct cctatcctga cgacgtcctt ggtcttgagt ttccagttgt 5160 gactgtattt tccgcgcttc cggtcagtga gatttgtgac aaagagggag cttacattgc 5220 gctgtccagg catacagaag aacttcatgt cagggcgcca ggttcattta actccaccag 5280 ttgaccacag taattctgtt ttagctttag tcgtaggggt ttcaatagct ttagtcgtat 5340 tttcaataac caggaacact tcaccacacg tcggggacaa catccactca ttgccacacg 5400 gaggttgtta caaagacgga actaagtcca tctattacgg aaagccgggc aattctgtcc 5460 gacagccagc tagaggggcc gcactagttc tcgtaatctt cctccccatc ctcatctatg 5520 ccattcacaa gtttgaatct cgccgtactc gtgtcagcgc ttgtggtcac attgcttgtc 5580 cttcaggtgg tgcaacgcaa cactgacaat tgcatcattg tgataacggg tcatcacgcg 5640 gagacaaact gcccaccatc tttggaactt gcagaagttt tgaagtacct caaaccccac 5700 catcatggtt aagtttccat tctatctgtt tccagctttg aaatattagt gtatctttaa 5760 ttattacagt tagtatggct agtcctccat cgccggcaaa ccagccgaaa gtcgaatcaa 5820 acaacccatt caaggcgcca actctggatc ggctcaaact catgacattc gatgtcaact 5880 ctactttgct tccatccaca gaggagttca aactcatctc agaggattgg gctaagttgg 5940 gtatctctgg ggactcactc actgaaaatg ccatgaaact ggcaacgttc tgctaccact 6000 caggctcttc cacgaccact gaaatgagag gggagtcctc caaacctggt gtctccttgt 6060 cccgattagc tggagtggtg aacatgcata cttcccttcg aaaattctgc cgctacttcg 6120 ctccactcat ttggaacatt cacgtggaga gtaagattcc accagcggct tggcaatcca 6180 aagacttcaa ggaaggggag aaattcgctg ccttcgattt tttcgacggt gttgaaaacg 6240 tggggtcaat caaaccgccg ggtggcctca ttcgaaagcc gaccgacaag gaacgcattg 6300 ccaacgcaac tgctcgagcc ttgaagcttt tcgaagcggc agcccagcaa aatcgcatgg 6360 cctccaacag tgtccactac actcaagggc gctattccga cactgcacca caaatccagt 6420 tcttaccgga tcccgaataa actactagtc cattactaaa acttaaataa gtaagacttt 6480 gcccgaactt taggc 6495 //