ID   JN387066; SV 1; linear; genomic RNA; STD; VRL; 1566 BP.
XX
AC   JN387066;
XX
DT   20-FEB-2013 (Rel. 115, Created)
DT   20-FEB-2013 (Rel. 115, Last updated, Version 1)
XX
DE   Chilli ringspot virus isolate VC6 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Chilli ringspot virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1566
RA   Zhang Y.-L., Wang J.-H., Zhang S.-Y., Xiong Z.-G., Liu Z.-X., Gong D.;
RT   "First report of Chilli ringspot virus in China";
RL   Unpublished.
XX
RN   [2]
RP   1-1566
RA   Zhang Y.-L., Wang J.-H., Zhang S.-Y., Xiong Z.-G., Liu Z.-X., Gong D.;
RT   ;
RL   Submitted (20-JUL-2011) to the INSDC.
RL   Institute of Tropical Bioscience and Biotechnology, Chinese Academy of
RL   Tropical Agricultural Science, 4 Xueyuan Road, Haikou, Hainan 571101, P.R.
RL   China
XX
DR   MD5; 4059711438a94c796aa22f496c73872d.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1566
FT                   /organism="Chilli ringspot virus"
FT                   /host="Capsicum chinense"
FT                   /isolate="VC6"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Hainan, Wenchang"
FT                   /collection_date="01-Oct-2009"
FT                   /PCR_primers="fwd_name: chirsv-f, fwd_seq:
FT                   cgtagacaacacactcatggt, rev_name: chirsv-r, rev_seq:
FT                   gttttcccagtcacgac"
FT                   /db_xref="taxon:414528"
FT   CDS             <1..1390
FT                   /codon_start=2
FT                   /product="polyprotein"
FT                   /db_xref="GOA:M1F4Q0"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:M1F4Q0"
FT                   /protein_id="AFJ19354.1"
FT                   /translation="IITMHYAARRAGLNYQEFCDNVKFVANGDDLIIAVKPCRESLLDT
FT                   LQETFSELGLTYDFTNRTRDKEDLCFMSHNGVMRDGIYIPKLEKERIVSILEWDRASEP
FT                   QNRLEAICASMIEAWGYDELLYQIRLFYAWVLEQAPYRELAKQGKAPYISEGALKKLYT
FT                   GEDSDFQIYLRSLIQSQWKDEDTIVYHQADTQAVDAGKSTQSSEKKPANPASAGKVVAE
FT                   TPRDRDVNVGTAGTFSVPRLKGISSKLNLPMINKKAVINLDHLLKYTPDQVTLSNTRAL
FT                   NSQFASWYEGVKTDYDLNDSQMEIVLNGLMVWCIENGTSPNLNGMWVMMDGDEQVEYPI
FT                   KPLLDHARPTFRQIMAHFSNLAEAYIEKRNAEKPYMPRYGLQRNLTDMTLARYAFDFYE
FT                   INSKTPARAREAHIQMKAAAVMHAKNNMFGLDGNVSTKEENTERHTATDVNRDMHHLMG
FT                   VRGV"
FT   mat_peptide     <1..574
FT                   /product="NIb"
FT   mat_peptide     575..1387
FT                   /product="CP"
FT   3'UTR           1391..1566
XX
SQ   Sequence 1566 BP; 496 A; 307 C; 354 G; 409 T; 0 other;
     gataataaca atgcactatg cagcgcgaag agcaggtcta aattaccaag agttctgtga        60
     caatgttaag tttgttgcca atggagatga tttgatcata gcagtgaaac cttgtaggga       120
     gtctttgcta gacacactac aggaaacatt ttctgaactt ggtctgacat atgactttac       180
     aaatcgcaca agagataaag aggatttgtg tttcatgtcg cacaacggag tgatgcgcga       240
     tggcatttac atccctaaac ttgagaaaga acggattgta tcaattctgg aatgggatag       300
     agcatctgag ccacaaaatc gcttagaggc catctgtgca tcgatgatcg aggcatgggg       360
     ttatgacgaa cttctatatc aaatccgctt gttctatgct tgggtgctag agcaagcacc       420
     ctaccgagag cttgcaaaac aagggaaagc accatatata tcggaaggtg ctctcaagaa       480
     gctgtacaca ggagaggatt cagactttca gatctacctt cgctctctca tccaaagtca       540
     atggaaggat gaagacacaa ttgtttacca tcaagctgat acacaagccg tagatgctgg       600
     taagagtaca cagagttcag agaagaaacc agcaaaccca gcctcagcgg gcaaagtggt       660
     agcagaaaca ccacgtgata gagatgttaa tgttggtaca gctggtacat tttctgttcc       720
     tcgactcaaa ggcatctcat ccaagttaaa tctaccaatg ataaacaaaa aggctgtaat       780
     aaatttggat cacctcctca agtacacacc ggatcaagta acactttcaa atacaagagc       840
     gctaaattca caatttgctt cgtggtatga gggtgttaaa actgattatg acctaaatga       900
     ctcacaaatg gaaatagttc taaatggttt gatggtttgg tgcattgaga atggaacatc       960
     accaaatcta aatggaatgt gggtcatgat ggatggtgat gaacaagttg agtacccaat      1020
     caaacccctc ctggatcatg ctagaccaac ttttaggcaa atcatggcac atttcagtaa      1080
     cttggcagaa gcttacatag agaagcgtaa tgcagagaaa ccatatatgc caaggtatgg      1140
     tttgcagcgc aatttgactg acatgactct agctcggtat gcattcgatt tttatgagat      1200
     taactcaaaa accccagcta gagcgagaga ggctcacatc caaatgaagg ccgcagctgt      1260
     tatgcacgca aagaacaata tgtttggcct ggatggaaat gtcagcacta aagaggagaa      1320
     cacagagcga cacactgcca cggatgtaaa ccgagacatg catcacttga tgggagtcag      1380
     aggagtgtag agctctttta ctatatatct atctgcatat ataatatagt atctagtttt      1440
     cctttttgaa ccagttgtct tgacattata gtgtggcgta ccacgaagtg tcactaccgc      1500
     ctggattttt ctacgatctg ccattgttgt aagtgatgtt ttacatcgtt caatgttggg      1560
     tagtgg                                                                 1566
//