Dbfetch

Dbfetch

ID   JN384022; SV 1; linear; genomic RNA; STD; VRL; 633 BP.
XX
AC   JN384022;
XX
DT   01-JUN-2012 (Rel. 113, Created)
DT   09-NOV-2012 (Rel. 114, Last updated, Version 2)
XX
DE   Citrus tristeza virus isolate 5C p23 gene, complete cds.
XX
KW   .
XX
OS   Citrus tristeza virus
OC   Viruses; Riboviria; Closteroviridae; Closterovirus.
XX
RN   [1]
RP   1-633
RX   DOI; 10.1016/j.jviromet.2012.01.015.
RX   PUBMED; 22305960.
RA   Licciardello G., Raspagliesi D., Bar-Joseph M., Catara A.;
RT   "Characterization of isolates of Citrus tristeza virus by sequential
RT   analyses of enzyme immunoassays and capillary electrophoresis-single-strand
RT   conformation polymorphisms";
RL   J. Virol. Methods 181(2):139-147(2012).
XX
RN   [2]
RP   1-633
RA   Licciardello G., Raspagliesi D., Bar Joseph M., Catara A.;
RT   "Sequential ELISA/CE-SSCP: a novel method for rapid characterization of
RT   naturally spreading citrus tristeza virus isolates";
RL   Unpublished.
XX
RN   [3]
RP   1-633
RA   Licciardello G., Raspagliesi D., Catara A.;
RT   ;
RL   Submitted (22-JUL-2011) to the INSDC.
RL   Parco Scientifico e Tecnologico della Sicilia s.c.p.a., ZI Blocco Palma I,
RL   Str.le V. Lancia 57, Catania, Catania 95121, Italy
XX
DR   MD5; 8056584cccb8ab6c1be4655990c91546.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..633
FT                   /organism="Citrus tristeza virus"
FT                   /host="Citrus macrophylla"
FT                   /isolate="5C"
FT                   /mol_type="genomic RNA"
FT                   /country="Italy:Sicily"
FT                   /db_xref="taxon:12162"
FT   CDS             1..630
FT                   /codon_start=1
FT                   /product="p23"
FT                   /db_xref="InterPro:IPR006893"
FT                   /db_xref="UniProtKB/TrEMBL:Q7T403"
FT                   /protein_id="AEX56592.1"
FT                   /translation="MDDTSGQTFISVNLSDESNTASTEIKAVSSEADRLEFLRKMNPFI
FT                   IDALIRKNSYQGARFRARIIGVCVDCGRKHDKASRTERKCKVNNTQSQNEVAHMLMHDP
FT                   VKYLNKRKARAFSNAEMFAIDLVMHTKERQLAVDLAAEREKTRLARRHPMRSPEETPEH
FT                   YKFGMTAKAMLPDINAVDVGDNEDTSSEYPVSLSVSGGVLREHHFI"
XX
SQ   Sequence 633 BP; 192 A; 125 C; 161 G; 155 T; 0 other;
     atggacgata ctagcggaca aacttttatt tctgtgaacc tttctgacga gagcaacaca        60
     gctagtactg aaatcaaagc cgtaagttcg gaagcggatc gcttggaatt tttacggaaa       120
     atgaatccct tcattatcga cgctttgata cggaaaaata gttatcaagg cgctcgcttt       180
     cgcgcgagaa taataggagt gtgcgtggat tgtggtagaa aacacgataa ggcatcgagg       240
     actgaacgta agtgtaaggt caacaatacg cagtctcaga acgaggtggc gcatatgtta       300
     atgcacgatc ccgtaaaata tttaaataaa agaaaagcta gagccttttc taacgcagag       360
     atgtttgcga tcgatttggt tatgcacacc aaagaaaggc aattagcggt tgatttggcc       420
     gctgaaaggg agaagacgag attggctcgt agacacccga tgcgttctcc ggaagagact       480
     ccggaacatt ataaattcgg tatgactgct aaggcaatgt taccggacat caacgctgta       540
     gacgttggtg ataacgaaga cacctcgtcg gagtacccag taagtctgag tgtttccggc       600
     ggagttctcc gtgaacacca cttcatctga ttg                                    633
//