ID JN381827; SV 1; circular; genomic DNA; STD; VRL; 2685 BP. XX AC JN381827; XX DT 21-MAR-2012 (Rel. 112, Created) DT 05-JUN-2012 (Rel. 113, Last updated, Version 2) XX DE Tomato rugose yellow leaf curl virus isolate U5 clone 2 segment DNA_A, DE complete sequence. XX KW . XX OS Tomato rugose yellow leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2685 RX PUBMED; 22383056. RA Marquez-Martin B., Maeso D., Martinez-Ayala A., Bernal R., RA Teresa Federici M., Vincelli P., Navas-Castillo J., Moriones E.; RT "Diverse population of a new bipartite begomovirus infecting tomato crops RT in Uruguay"; RL Arch. Virol. 157(6):1137-1142(2012). XX RN [2] RP 1-2685 RA Marquez-Martin B., Maeso D., Martinez-Ayala A., Bernal R., Federici M.T., RA Vincelli P., Navas-Castillo J., Moriones E.; RT ; RL Submitted (20-JUL-2011) to the INSDC. RL Virology, Inst. Hortofruticultura Subtropical y Mediterranea 'La Mayora' RL (IHSM-CSIC), Algarrobo Costa s/n., Algarrobo Costa, Malaga 29760, Spain XX DR MD5; 93270cff7dda8ee88a230fe9561740ad. XX FH Key Location/Qualifiers FH FT source 1..2685 FT /organism="Tomato rugose yellow leaf curl virus" FT /segment="DNA_A" FT /host="tomato" FT /strain="A" FT /isolate="U5" FT /mol_type="genomic DNA" FT /country="Uruguay:Salto Grande" FT /collection_date="2009" FT /identified_by="B. Marquez-Martin" FT /clone="2" FT /db_xref="taxon:1162280" FT gene 275..1021 FT /gene="AV1" FT CDS 275..1021 FT /codon_start=1 FT /gene="AV1" FT /product="CP" FT /db_xref="GOA:H8ZPQ9" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:H8ZPQ9" FT /protein_id="AFD62704.1" FT /translation="MPKRDGSWRSIAGTSKVRRSLNFTPRGGIGPKASAWINRPMYRKP FT RIYRTYRSPDVPKGCEGPCKVQSYEQRHDIAHTGKVLCISDVTRGSGITHRVGKRFCVK FT SVYILGKVWMDDNIKLRNHTNNVMFWLVRDRRPYGTPMDFGQVFNLFDNEPSTATVKND FT LRDRFQVMHKFHTTVTGGQYAAKEQAMVKRFWRVNNHVTYNHQEAAKYENHTENALLLY FT MACTHASNPVYATLKIRFYFYDSISN" FT gene complement(1018..1416) FT /gene="AC3" FT CDS complement(1018..1416) FT /codon_start=1 FT /gene="AC3" FT /product="REn" FT /db_xref="GOA:H8ZPR0" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H8ZPR0" FT /protein_id="AFD62705.1" FT /translation="MDSRTGELITAPQAESGVYIWEITNPLYFKITRVEDPLYTNNRIY FT HVQIRFNHNLRRALDLHKAFLNFQVWTTSVTASGPIYLNRFRHLVLLYLDQLGVISINN FT VIRAVRFATDRSYVNAVLEHHSIKFNIY" FT gene complement(1163..1552) FT /gene="AC2" FT CDS complement(1163..1552) FT /codon_start=1 FT /gene="AC2" FT /product="TrAP" FT /db_xref="GOA:H8ZPQ4" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H8ZPQ4" FT /protein_id="AFD62706.1" FT /translation="MRDSSSSHLPSIKVAHRAAKRRAIRRRRIDLHCGCSIYVHINCRN FT NGFTHRGTHHCASSREWRVYLGDNKSPIFQDNQSGGSTLHQQQDLPRPDTVQPQPEESV FT GSPQGISQLPSLDDFSDSFWADLFK" FT gene complement(1473..2543) FT /gene="AC1" FT CDS complement(1473..2543) FT /codon_start=1 FT /gene="AC1" FT /product="Rep" FT /db_xref="GOA:H8ZPR2" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H8ZPR2" FT /protein_id="AFD62707.1" FT /translation="MPRNPNQFRLAAKNIFLTYPQCDIPKDEALQMLQALPWSIVKPTY FT VRVAREEHSDGYPHLHCLIQLSGKSNIKDARFFDLTHPRRSANFHPNVQAAKDTNAVKN FT YINKEGDYCESGQYKVSGGTKSNKDDVYHNAVNAASAGEAIQIIRAGDPKTFVVNYHNV FT KANIERLFQKAPEPWSPPFPLSSFTNVPDEMQEWADDYFGRSSAARPERPISIIVEGDS FT RTGKTMWARALGSHNYLSGHLDFNSRVYSNEAEYNVIDDVAPHYLKLKHWKELIGAQKD FT WQSNCKYGKPVQIKGGISAIVLCNPGEGASYKDFLDKEENSALRAWTIRNARFIFLTSP FT LYQSSTQGSQAQGYST" FT gene complement(2069..2464) FT /gene="AC4" FT CDS complement(2069..2464) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /db_xref="UniProtKB/TrEMBL:H8ZPR3" FT /protein_id="AFD62708.1" FT /translation="MKLFKCFKPFHGQSSNPHTSESQERNTLTDIPISIVSSSYPESLT FT SRMLDFSTLLTPEGLPIFTQMYRQPKTPTPSRITSTKRVIIVNPDNTKCLGEQNQIKTT FT YTTTPSMQLVLERLFRSLEPETPRHSL" XX SQ Sequence 2685 BP; 647 A; 583 C; 678 G; 777 T; 0 other; actggatggc cgcccgattt ttggtgtcct gctttaattt gaacgaggag cgtcttttgg 60 tggccccacg cggtcaagcg tgatttcggc gcaattacgt gtgggtcctg agaatgctcg 120 ctcaaagcta agttattttg aaagacttgg tgggtaagtt tgtaaatttg tataagttga 180 gcccacatgt aagaagtatg tcagtcttgt tgcgagactg tgcatgattg agtggagtgg 240 atactttatg tctatatttg atttgtaatt taaaatgccg aagcgggatg ggtcatggcg 300 ttcgattgcg ggtacgtcta aggttaggcg ctctctcaat ttcacgcccc gtggaggtat 360 tgggcctaag gcctctgcct ggattaatag gcccatgtac aggaagccca ggatttatcg 420 gacttacagg tcgcctgacg ttccaaaagg gtgtgaaggg ccttgtaagg tccagtcata 480 tgagcagcgt catgacatcg cccataccgg taaggtgctg tgtatctccg atgtgacacg 540 cggcagcggc attactcatc gtgtcggtaa gcgtttttgt gtgaagtctg tctatatctt 600 aggtaaggta tggatggacg ataacatcaa gttgaggaac cacacgaaca acgtcatgtt 660 ctggttggtt agagaccgga gaccctatgg cacgcccatg gatttcggac aggtgttcaa 720 tttgttcgat aatgagccta gtaccgccac cgtgaagaac gatctccgag atcgtttcca 780 agtgatgcac aagttccaca ccacggtcac tggtgggcaa tatgctgcca aggagcaggc 840 gatggtgaag cgtttctggc gggtcaacaa ccatgtgacc tataaccacc aagaagccgc 900 taagtacgag aaccacacgg agaatgccct gttattgtat atggcatgta ctcatgcttc 960 taaccctgtg tatgcaaccc ttaagattcg gttctatttt tacgattcga tatcaaatta 1020 ataaatgttg aactttattg aatgatgttc gagtacagca tttacatacg atctgtctgt 1080 tgcgaaacga acagctctaa ttacattgtt aatggaaata acgcctaact ggtctaagta 1140 caacaaaact aaatgtctaa acctatttaa atagatcggc ccagaagctg tcactgaagt 1200 cgtccagact tggaagttga gaaatgcctt gtggagatcc aacgctctcc tcaggttgtg 1260 gttgaaccgt atctggacgt ggtagatcct gttgttggtg tagagtggat cctccactct 1320 ggttatcttg aaatataggg gatttgttat ctcccagata tacacgccac tctctgcttg 1380 aggcgcagtg atgagttccc ctgtgcgtga atccattgtt gcggcagtta atgtggacgt 1440 atattgagca cccacagtgt aggtcaatgc gcctacgtcg aatagccctg cgcttggctg 1500 ccctgtgtgc tactttgata gaggggagat gtgaggaaga tgaatctcgc attgcggatt 1560 gtccaggctc ttagtgctga gttttcctct ttgtcgagga aatctttata actggccccc 1620 tctccaggat tgcaaagcac gattgctgat atccctcctt taatttgaac tggcttaccg 1680 tacttgcaat tgctttgcca gtccttctgg gccccaatta attctttcca gtgctttagc 1740 tttagatagt gcggggcgac gtcatcaatg acgttatact ccgcctcgtt cgagtaaacc 1800 ctagaattga aatctaggtg tccgctcaag taattgtgcg aacctaaagc acgggcccac 1860 atcgtcttcc ccgtcctact atcaccctcg acgatgatac taataggtcg ttcaggccgc 1920 gcagcggaac ttctcccgaa ataatcgtcc gcccactctt gcatctcgtc gggaacgtta 1980 gtgaatgaag agaggggaaa cggaggagac catggttccg gagccttttg aaaaagacgc 2040 tcgatgttag ctttgacatt atgataattc acaacgaatg tcttggggtc tccggctcta 2100 atgatctgaa tagcctctcc agcactagct gcattgacgg cgttgtggta tacgtcgtct 2160 ttatttgatt ttgttccccc agacactttg tattgtccgg attcacaata atcaccctct 2220 ttgttgatgt aattcttgac ggcgttggtg tctttggctg cctgtacatt tgggtgaaaa 2280 ttggcagacc ttctggggtg agtaaggtcg aaaaatctag catccttgat gttagacttt 2340 ccggatagct ggatgagaca atggagatgg ggatatccgt cagagtgttc ctctcttgcg 2400 actcggacgt atgtgggttt gacgattgac catggaaggg cttgaagcat ttgaagagct 2460 tcatcctttg gtatatcgca ctgaggatat gtgaggaata tgtttttggc agcaagccta 2520 aattggttag gatttcgtgg catattggta aatatgttcg aggacaccaa ggatggctct 2580 caacttctct cctatttgct ggtgtcctgg tgtcccattt atactacaag cctctaaaag 2640 cctcttgagg acaccagggg caaaagcggc catccatata atatt 2685 //