ID JN381823; SV 1; circular; genomic DNA; STD; VRL; 2685 BP. XX AC JN381823; XX DT 21-MAR-2012 (Rel. 112, Created) DT 05-JUN-2012 (Rel. 113, Last updated, Version 2) XX DE Tomato rugose yellow leaf curl virus isolate U4 clone 1 segment DNA_A, DE complete sequence. XX KW . XX OS Tomato rugose yellow leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2685 RX PUBMED; 22383056. RA Marquez-Martin B., Maeso D., Martinez-Ayala A., Bernal R., RA Teresa Federici M., Vincelli P., Navas-Castillo J., Moriones E.; RT "Diverse population of a new bipartite begomovirus infecting tomato crops RT in Uruguay"; RL Arch. Virol. 157(6):1137-1142(2012). XX RN [2] RP 1-2685 RA Marquez-Martin B., Maeso D., Martinez-Ayala A., Bernal R., Federici M.T., RA Vincelli P., Navas-Castillo J., Moriones E.; RT ; RL Submitted (20-JUL-2011) to the INSDC. RL Virology, Inst. Hortofruticultura Subtropical y Mediterranea 'La Mayora' RL (IHSM-CSIC), Algarrobo Costa s/n., Algarrobo Costa, Malaga 29760, Spain XX DR MD5; ac9dd41465b6e89d305330029115607a. XX FH Key Location/Qualifiers FH FT source 1..2685 FT /organism="Tomato rugose yellow leaf curl virus" FT /segment="DNA_A" FT /host="tomato" FT /strain="B" FT /isolate="U4" FT /mol_type="genomic DNA" FT /country="Uruguay:Salto Grande" FT /collection_date="2009" FT /identified_by="B. Marquez-Martin" FT /clone="1" FT /db_xref="taxon:1162280" FT gene 275..1021 FT /gene="AV1" FT CDS 275..1021 FT /codon_start=1 FT /gene="AV1" FT /product="CP" FT /db_xref="GOA:H8ZPP5" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:H8ZPP5" FT /protein_id="AFD62690.1" FT /translation="MPKRDGSWRSIAGTSKVRRSLNFSPRGVIGPKASAWVNRPMYRKP FT RIYRTYRSPDVPKGCEGPCKVQSYEQRHDIAHTGKVMCISDVTRGSGITHRVGKRFCVK FT SVYILGKVWMDDNIKLRNHTNNVMFWLVRDRRPYGTPMDFGQVFNLFDNEPSTATVKND FT LRDRFQVMHKFHTTVTGGQYAAKEQAMVKRFWRVNNHVTYNHQEAAKYENHTENALLLY FT MACTHASNPVYATLKIRIYFYDSISN" FT gene complement(1018..1416) FT /gene="AC3" FT CDS complement(1018..1416) FT /codon_start=1 FT /gene="AC3" FT /product="REn" FT /db_xref="GOA:H8ZPP6" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H8ZPP6" FT /protein_id="AFD62691.1" FT /translation="MDSRTGELITAPQAESGVYIWEITNPLYFKITRVEDPLYTNNRIY FT HVQIRFNHNLRRALDLHKAFLNFQIWTTSVTASGQIYLNRFRHLVLMYLDQLGVISINN FT VIRAVRFATDRSYVNHVLEDHSIKYKLY" FT gene complement(1163..1552) FT /gene="AC2" FT CDS complement(1163..1552) FT /codon_start=1 FT /gene="AC2" FT /product="TrAP" FT /db_xref="GOA:H8ZPP7" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H8ZPP7" FT /protein_id="AFD62692.1" FT /translation="MRDSSSSHLPSIKVAHRAAKRRAIRRRRIDLHCGCSVYVHINCRN FT NGFTHRGTHHCASSREWRVYLGDNKSPIFQDNQSGGSTLHQQQDLPRPDTVQPQPEESV FT GSPQGISQLPNLDDFSDSFWADIFK" FT gene complement(1473..2543) FT /gene="AC1" FT CDS complement(1473..2543) FT /codon_start=1 FT /gene="AC1" FT /product="Rep" FT /db_xref="GOA:H8ZPP8" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H8ZPP8" FT /protein_id="AFD62693.1" FT /translation="MPRNPNQFRLAAKNIFLTYPQCDIPKDEALQLLQSLPWSIVKPTY FT IRVAREEHSDGHPHLHCLIQLTGKSNIKDVRFFDLTHPRRSANFHPNVQAAKDTNAVKN FT YITKEGDFCESGQYKVCGGTKANKDDVYHNAVNAGGVTEALQIIRAGDPKTFIVNYHNV FT KANIERLFQKAPEPWTPPFPLSSFTNVPDEMQEWADNYFGRGSAARPDRPISIIVEGDS FT RTGKTMWARALGSHNYLSGHLDFNSRVYSNEAEYNVIDDITPHYLKLKHWKELIGAQKD FT WQSNCKYGKPVQIKGGIPAIVLCNPGEGASYKDFLDKEENSSLRGWTLHNARFIFLTSP FT LYQGSAQGSQAQGNST" FT gene complement(2069..2464) FT /gene="AC4" FT CDS complement(2069..2464) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /db_xref="UniProtKB/TrEMBL:H8ZPP9" FT /protein_id="AFD62694.1" FT /translation="MKLFNCFNPFHGQSSNPHTFESQERNTLTDIPISIVSFNSPESRT FT SRMLDFSTLLTPEGLPIFTQMSRQPKTPTPSRITSPKRVIFVNPDNTRYVGEQRPIKTT FT FTTTPSMPEELQRLFRLLEPEIQRRSL" XX SQ Sequence 2685 BP; 652 A; 575 C; 669 G; 789 T; 0 other; actggatggc cgcccgattt ttggtgtcct gctttaattt gaatgatgag cgtcttttgg 60 tggccccacg cggtcaagcg tggtttcggc gcaattacgt gttggacctg agaatgctcg 120 ctcaaagcta agttattttg aaagacttgg ggggtaagtt tgtaaatttg tataagttga 180 gcccatatgt agtgatccac ccagtcttgt tgcgagactg tgcatgattg ggtggagtgg 240 atactttatg tctatatttg atttgtaatt taaaatgccg aagcgggatg ggtcatggcg 300 ttcgattgcg ggtacgtcta aggttaggcg ctccctcaat ttctcgcccc gtggagttat 360 tgggcctaag gcctctgcct gggttaatag gcccatgtac aggaagccca ggatttatcg 420 gacttacagg tcgcctgacg ttcccaaagg gtgtgaagga ccttgtaaag tccagtcata 480 cgagcagcgc catgacatcg cccataccgg gaaggtgatg tgtatctctg atgtgacacg 540 cggcagcggc attactcatc gtgtcggtaa gcgtttttgt gtgaagtctg tctatatatt 600 aggtaaggta tggatggacg ataacatcaa gctgaggaac cacacgaaca atgtcatgtt 660 ctggctggtt agagaccgga gaccctatgg tacgcctatg gatttcggac aggtgttcaa 720 tctgttcgat aacgagccca gtaccgccac cgtgaagaac gatctccgtg atcgtttcca 780 agtgatgcat aaattccaca ccacggtcac cggtgggcaa tatgctgcta aggaacaggc 840 gatggtgaag cgtttctgga gggtcaacaa ccatgtgacc tataaccacc aggaagccgc 900 gaagtacgag aaccacacgg agaacgccct gttgttgtat atggcatgta ctcatgcgtc 960 taatcctgtg tatgcaactc tcaagattcg gatctatttt tatgattcga tatcaaatta 1020 ataaagtttg tattttattg aatgatcttc gagtacatga tttacatacg atctgtctgt 1080 tgcgaaacga acagctctaa ttacattgtt aattgaaata acgcctaact gatctagata 1140 catcaaaact aaatgtctaa acctatttaa atatatctgc ccagaagctg tcactgaagt 1200 cgtccagatt tggaagttga gaaatgcctt gtggagatcc aacgctctcc tcaggttgtg 1260 gttgaaccgt atctggacgt ggtagatcct gttgttggtg taaagtggat cctccactct 1320 ggttatcttg aaatataggg gatttgttat ctcccaaata tacacgccac tctctgcttg 1380 aggcgcagtg atgagttccc ctgtgcgtga atccattgtt gcggcagttt atgtggacgt 1440 atactgaaca cccacaatgt aggtcaatgc gtctacgtcg aattgccctg cgcttggctg 1500 ccctgtgcgc taccttgata gaggggagat gtgaggaaga tgaatctcgc attgtgtagt 1560 gtccagcctc ttaatgatga gttttcctct ttgtcgagga aatctttata actggccccc 1620 tctcctggat tgcaaagcac gattgctggt atccctcctt taatttgaac cggcttaccg 1680 tacttgcagt tgctttgcca gtccttctgg gccccaatca attctttcca gtgctttagc 1740 tttagataat gcggagtgat atcatcaatg acgttatact ccgcttcgtt cgagtaaacc 1800 ctagaattga aatctaggtg tccgcttaag taattatgtg aacctaaagc acgggcccac 1860 atcgtcttcc ccgttcgact atcaccttcg acgatgatac taataggtct atctggccgc 1920 gcagcggaac ctctcccgaa ataattgtcc gcccattctt gcatctcgtc tggaacgtta 1980 gtgaatgagg agaggggaaa cggaggagtc catggttccg gagccttttg aaataggcgt 2040 tcaatgttag ctttgacgtt atgataattc acaatgaacg tctttggatc tccggctcta 2100 ataatctgaa gagcctctgt aactcctccg gcattgacgg cgttgtggta aacgtcgtct 2160 ttattggcct ttgttccccc acataccttg tattgtccgg attcacaaaa atcaccctct 2220 ttggtgatgt aattcttgac ggcgttggtg tctttggctg cctggacatt tgggtgaaaa 2280 ttggcagacc ttctggggtg agtaaggtcg aaaaatctaa catccttgat gttcgacttt 2340 ccggtgagtt gaatgagaca atggagatgg ggatgtccgt cagagtgttc ctctcttgcg 2400 actcgaatgt atgtgggttt gacgattgac catggaaggg attgaagcaa ttgaagagct 2460 tcatcctttg gtatatcgca ctggggatat gtgaggaaga tgtttttggc agcaagtcta 2520 aattggttgg gattccgtgg catattggta aatatgtatg aggacaccag ctccagctct 2580 cactaaaacc tattgttgtt ggtgtcctgg tgtcctatat atactacaag gctctaaaag 2640 cctcttgagg acaccagggg caaaagcggc catccatata atatt 2685 //